Rroxscaffold_5G00385500

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
64556938 .. 64558750
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385500.1

Sequence Viewer

Length: 642 bp
ATGCCTTCAGATTCACCATTCTTTCTCCTCCTCCTCCTTCTCCTCTTCTTCTTCTGCTTCTCCACAGCCTTCGCTCTGCTCTCAGTAGGCTCCGCCACAATCGAAGATGGTGAAGGCGAAAGGATTGGAAGTAGAACGCTTCTGGGTCTCAAAGAAACCCCTCATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTATCGCTGCAGTGAGACTGGCTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAAGGATGCAAAGGCAAAGATAGGCACTAAGAAGAGTAGATCAACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGGAAGATCTCGGTACTCTCTTAAAGCGTAGAAGTTTACTGGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGTGATTGTCCTGTGTTTGCTAGTCATTAGTGGTTCTATTGTATACTTCAAAAAAAGGCAGACAGCTACAATGGCAGGATTTTCCCGAATTCAGAGCAACGCAAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.61

Weight (kDa)

8.38

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 487, 573
AciI CCGC 2 cut(s) 93, 389
AcsI RAATTY 1 cut(s) 618
AfaI GTAC 1 cut(s) 403
AgsI TTSAA 3 cut(s) 185, 280, 580
AluBI AGCT 2 cut(s) 483, 596
AluI AGCT 2 cut(s) 483, 596
Alw26I GTCTC 2 cut(s) 152, 251
AlwNI CAGNNNCTG 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 6, 122, 544
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 152, 251
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 2 cut(s) 250, 441
BglII AGATCT 1 cut(s) 394
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 91, 202
BmsI GCATC 2 cut(s) 279, 301
BsaI GGTCTC 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 265, 432, 494
BseGI GGATG 3 cut(s) 270, 316, 436
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 265, 432, 494
BseRI GAGGAG 4 cut(s) 17, 20, 23, 32
BseXI GCAGC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 152, 251
BsmFI GGGAC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 344, 394
BspACI CCGC 2 cut(s) 93, 389
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 91, 202
BspMAI CTGCAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 3 cut(s) 265, 432, 494
BssMI GATC 2 cut(s) 344, 394
BssNAI GTATAC 2 cut(s) 488, 574
Bst1107I GTATAC 2 cut(s) 488, 574
Bst6I CTCTTC 4 cut(s) 50, 332, 441, 498
BstC8I GCNNGC 2 cut(s) 458, 462
BstDEI CTNAG 2 cut(s) 82, 333
BstF5I GGATG 3 cut(s) 270, 316, 436
BstKTI GATC 2 cut(s) 347, 397
BstMAI GTCTC 2 cut(s) 152, 251
BstMBI GATC 2 cut(s) 344, 394
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstSFI CTRYAG 2 cut(s) 250, 441
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 2 cut(s) 488, 574
BtsCI GGATG 3 cut(s) 270, 316, 436
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 259, 522
Cac8I GCNNGC 2 cut(s) 458, 462
CaiI CAGNNNCTG 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 402
CviAII CATG 1 cut(s) 164
CviJI RGCY 6 cut(s) 68, 90, 264, 464, 483, 596
CviKI_1 RGCY 6 cut(s) 68, 90, 264, 464, 483, 596
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 82, 333
DpnI GATC 2 cut(s) 346, 396
DpnII GATC 2 cut(s) 344, 394
Eam1104I CTCTTC 4 cut(s) 50, 332, 441, 498
EarI CTCTTC 4 cut(s) 50, 332, 441, 498
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 618
FaeI CATG 1 cut(s) 167
FaiI YATR 4 cut(s) 165, 384, 488, 574
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 163
FblI GTMKAC 2 cut(s) 487, 573
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 3 cut(s) 257, 323, 443
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 1 cut(s) 551
GluI GCNGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 167
HinfI GANTC 2 cut(s) 11, 434
HphI GGTGA 3 cut(s) 6, 122, 544
Hpy166II GTNNAC 3 cut(s) 425, 488, 574
Hpy188I TCNGA 4 cut(s) 10, 226, 376, 624
Hpy188III TCNNGA 2 cut(s) 353, 615
Hpy8I GTNNAC 3 cut(s) 425, 488, 574
HpyAV CCTTC 4 cut(s) 15, 47, 79, 107
HpyCH4V TGCA 3 cut(s) 252, 314, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 2 cut(s) 82, 333
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 2 cut(s) 344, 394
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 9 cut(s) 128, 217, 246, 338, 413, 446, 507, 554, 591
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 2 cut(s) 279, 301
MaeI CTAG 1 cut(s) 551
MalI GATC 2 cut(s) 346, 396
MboI GATC 2 cut(s) 344, 394
MboII GAAGA 9 cut(s) 37, 40, 43, 116, 349, 404, 429, 458, 515
MflI RGATCY 1 cut(s) 394
MluCI AATT 3 cut(s) 291, 377, 618
MnlI CCTC 6 cut(s) 38, 41, 44, 53, 171, 523
MseI TTAA 5 cut(s) 294, 305, 410, 498, 640
Mva1269I GAATGC 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 602
NdeII GATC 2 cut(s) 344, 394
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 2 cut(s) 91, 202
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 11, 434
PkrI GCNGC 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 91, 202
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 5 cut(s) 294, 305, 410, 498, 640
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 344, 394
Sau96I GGNCC 1 cut(s) 200
SetI ASST 5 cut(s) 182, 485, 534, 598, 638
SfaNI GCATC 2 cut(s) 279, 301
SfcI CTRYAG 2 cut(s) 250, 441
SinI GGWCC 1 cut(s) 200
Sse9I AATT 3 cut(s) 291, 377, 618
SsiI CCGC 2 cut(s) 93, 389
SspMI CTAG 1 cut(s) 551
TaqI TCGA 2 cut(s) 102, 176
TasI AATT 3 cut(s) 291, 377, 618
TfiI GAWTC 2 cut(s) 11, 434
Tru1I TTAA 5 cut(s) 294, 305, 410, 498, 640
Tru9I TTAA 5 cut(s) 294, 305, 410, 498, 640
TscAI CASTG 2 cut(s) 259, 522
TseI GCWGC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 516
TspRI CASTG 2 cut(s) 259, 522
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 618
XmiI GTMKAC 2 cut(s) 487, 573
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.