Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014338

Physical Location & Seq

Genomic Coordinates Forward (+)

63243652 .. 63245458

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCTTCAGATTCACCATTCTTTCTCCTCTTCTTCTTCTTCTTCTTCTCCACAGCCTTCGATCTGCTCTCAGTAGGCTCCGCCACAATCGAAGATGGTGAAGGCGAAGGGATTGGAAGTAGAACGCTTCTGGGTCTCAAAGAAACCCCTCATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTATCGCTGCAGTGAGACTGGTTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAAGGATGCAAAGGCAAAGATAGGCCCTAAGAAGAGTAGATCAACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGGAAGAGCTCAGTACTCTCTTAAAGCGTAGAAGTTTACTGGATGATGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGTGATTGTCCTGTGTTTGCTAGTCATTAGTGGTTCTATTGTATACTTCAAAAAAAGGCAGACAGCTACAATGGCAGGATTTTCCCGAATTCAGAGCAACGCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

6.33

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69980
fragaria_vesca	FvH4_4g35380 FvH4_4g35380
malus_domestica	MD16G1083100.v1.1
prunus_persica	Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis	pycom16g07200
rosa_chinensis	RchiOBHm_Chr4g0444991
rosa_laevigata	RLG00000005779
rosa_multiflora	Rmu_ssc0000285.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385500
rosa_rugosa	Rorug04G0357100 Rorug04G0357200
rosa_samantha	Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana	Rw4G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	481, 567
AciI	CCGC	2 cut(s)	81, 377
AcsI	RAATTY	1 cut(s)	612
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	173, 268, 574
AluBI	AGCT	3 cut(s)	385, 477, 590
AluI	AGCT	3 cut(s)	385, 477, 590
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	140, 239
AlwNI	CAGNNNCTG	1 cut(s)	477
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	188, 317
AsuHPI	GGTGA	3 cut(s)	6, 110, 538
AvaII	GGWCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	140, 239
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	238, 435
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
BmcAI	AGTACT	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	188, 317
BmiI	GGNNCC	2 cut(s)	79, 190
BmsI	GCATC	2 cut(s)	267, 289
BsaI	GGTCTC	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	253, 420, 488
BseGI	GGATG	3 cut(s)	258, 304, 424
BseMII	CTCAG	2 cut(s)	84, 400
BseNI	ACTGG	3 cut(s)	253, 420, 488
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	140, 239
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	61, 332
BspACI	CCGC	2 cut(s)	81, 377
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	83, 399
BspLI	GGNNCC	2 cut(s)	79, 190
BspMAI	CTGCAG	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	253, 420, 488
BssMI	GATC	2 cut(s)	61, 332
BssNAI	GTATAC	2 cut(s)	482, 568
Bst1107I	GTATAC	2 cut(s)	482, 568
Bst6I	CTCTTC	5 cut(s)	35, 320, 375, 435, 492
BstC8I	GCNNGC	2 cut(s)	452, 456
BstDEI	CTNAG	3 cut(s)	70, 321, 386
BstF5I	GGATG	3 cut(s)	258, 304, 424
BstKTI	GATC	2 cut(s)	64, 335
BstMAI	GTCTC	2 cut(s)	140, 239
BstMBI	GATC	2 cut(s)	61, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstSFI	CTRYAG	2 cut(s)	238, 435
BstV1I	GCAGC	1 cut(s)	224
BstZ17I	GTATAC	2 cut(s)	482, 568
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	258, 304, 424
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 516
Cac8I	GCNNGC	2 cut(s)	452, 456
CaiI	CAGNNNCTG	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	188, 317
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	7 cut(s)	56, 78, 318, 385, 458, 477, 590
CviKI_1	RGCY	7 cut(s)	56, 78, 318, 385, 458, 477, 590
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	3 cut(s)	70, 321, 386
DpnI	GATC	2 cut(s)	63, 334
DpnII	GATC	2 cut(s)	61, 332
Eam1104I	CTCTTC	5 cut(s)	35, 320, 375, 435, 492
EarI	CTCTTC	5 cut(s)	35, 320, 375, 435, 492
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	153, 372, 482, 568
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	2 cut(s)	481, 567
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	3 cut(s)	245, 311, 431
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	2 cut(s)	11, 428
HphI	GGTGA	3 cut(s)	6, 110, 538
Hpy166II	GTNNAC	3 cut(s)	413, 482, 568
Hpy188I	TCNGA	4 cut(s)	10, 214, 364, 618
Hpy188III	TCNNGA	2 cut(s)	341, 609
Hpy8I	GTNNAC	3 cut(s)	413, 482, 568
HpyAV	CCTTC	4 cut(s)	15, 67, 95, 101
HpyCH4V	TGCA	3 cut(s)	240, 302, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	3 cut(s)	70, 321, 386
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	61, 332
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	116, 205, 234, 326, 401, 440, 501, 548, 585
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	267, 289
MaeI	CTAG	1 cut(s)	545
MalI	GATC	2 cut(s)	63, 334
MboI	GATC	2 cut(s)	61, 332
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	3 cut(s)	279, 365, 612
MnlI	CCTC	3 cut(s)	38, 159, 517
MseI	TTAA	5 cut(s)	282, 293, 398, 492, 634
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeII	GATC	2 cut(s)	61, 332
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	79, 190
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	11, 428
PkrI	GCNGC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	79, 190
PspPI	GGNCC	2 cut(s)	188, 317
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	477
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	282, 293, 398, 492, 634
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	2 cut(s)	61, 332
Sau96I	GGNCC	2 cut(s)	188, 317
ScaI	AGTACT	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	6 cut(s)	170, 387, 479, 528, 592, 632
SfaNI	GCATC	2 cut(s)	267, 289
SfcI	CTRYAG	2 cut(s)	238, 435
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	3 cut(s)	279, 365, 612
SsiI	CCGC	2 cut(s)	81, 377
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	387
TaqI	TCGA	3 cut(s)	60, 90, 164
TasI	AATT	3 cut(s)	279, 365, 612
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	11, 428
Tru1I	TTAA	5 cut(s)	282, 293, 398, 492, 634
Tru9I	TTAA	5 cut(s)	282, 293, 398, 492, 634
TscAI	CASTG	2 cut(s)	247, 516
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	247, 516
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	612
XmiI	GTMKAC	2 cut(s)	481, 567
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.