Rh4AG419000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014338
Physical Location & Seq
Forward (+)
71655879 .. 71657632
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG419000.1

Sequence Viewer

Length: 810 bp
ATGCCTTCAGATTCACCATTCTTTCTCCTCTTCTTCTTCTTCTTCTTCTCCACAGCCTTCGCTCTGCTCTCAGTAGGCTCCGCCACAATCGAAGATGGTGAAGGCGAAGGGATTGGAAGTAGAACGCTTCTGGGTCTCAAAGAAACCCCTCATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTATCGCTGCAGTGAGACTGGTTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAAGGATGCAAAGGCAAAGATAGGCCCTAAGAAGAGTAGATCAACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGGAAGAGCTCAGTACTCTCTTAAAGCGTAGAAGTTTACTGGATGATGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGCAGACAGCTACAATGGCAGGATTTTCCCGAATTCAGAGCAACGCAAGGTTTTAAATGCAAGGCCTGTGCTAAATCAGAAGTCCCTTCACACTCGCTGCCCTCAGTTTCTCCATCTGTATGCTATTTCATGTATTGAAACGATTCATAGAAACCAGTTCTCTCTGTTTGGAATGAAACTGCAGAAATTTGGCACTATGTTGTACTTGCAATCCCAGGAATTGCATTGCCCATTTCCGAAACGCCCTCGATTTGTACGGTGTATTTTATTTGCACAAGGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.44

Weight (kDa)

8.28

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 481
AciI CCGC 2 cut(s) 81, 377
AcsI RAATTY 2 cut(s) 556, 710
AfaI GTAC 3 cut(s) 391, 728, 780
AgsI TTSAA 3 cut(s) 173, 268, 662
AjnI CCWGG 1 cut(s) 738
AluBI AGCT 3 cut(s) 385, 477, 534
AluI AGCT 3 cut(s) 385, 477, 534
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 2 cut(s) 140, 239
AlwNI CAGNNNCTG 1 cut(s) 477
AoxI GGCC 2 cut(s) 316, 587
ApeKI GCWGC 2 cut(s) 237, 621
ApoI RAATTY 2 cut(s) 556, 710
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 188, 317
AsuHPI GGTGA 2 cut(s) 6, 110
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 224, 608
BccI CCATC 2 cut(s) 89, 645
BciT130I CCWGG 1 cut(s) 740
BcoDI GTCTC 2 cut(s) 140, 239
BfmI CTRYAG 3 cut(s) 238, 435, 704
BisI GCNGC 2 cut(s) 238, 622
BlsI GCNGC 2 cut(s) 239, 623
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 740
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 188, 317
BmiI GGNNCC 2 cut(s) 79, 190
BmrFI CCNGG 1 cut(s) 740
BmsI GCATC 2 cut(s) 267, 289
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 738
Bse1I ACTGG 4 cut(s) 253, 420, 488, 679
Bse3DI GCAATG 1 cut(s) 748
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 3 cut(s) 258, 304, 424
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 3 cut(s) 84, 400, 641
BseNI ACTGG 4 cut(s) 253, 420, 488, 679
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 224, 608
BshFI GGCC 2 cut(s) 318, 589
BsiHKAI GWGCWC 1 cut(s) 387
BslFI GGGAC 2 cut(s) 174, 592
BsmAI GTCTC 2 cut(s) 140, 239
BsmFI GGGAC 2 cut(s) 174, 592
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 318, 589
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 332
BspACI CCGC 2 cut(s) 81, 377
BspANI GGCC 2 cut(s) 318, 589
BspCNI CTCAG 3 cut(s) 83, 399, 640
BspLI GGNNCC 2 cut(s) 79, 190
BspMAI CTGCAG 2 cut(s) 242, 708
BspQI GCTCTTC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 4 cut(s) 253, 420, 488, 679
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 1 cut(s) 332
BssNAI GTATAC 1 cut(s) 482
Bst1107I GTATAC 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 1 cut(s) 783
Bst6I CTCTTC 5 cut(s) 35, 320, 375, 435, 492
BstC8I GCNNGC 2 cut(s) 452, 456
BstDEI CTNAG 4 cut(s) 70, 321, 386, 627
BstF5I GGATG 3 cut(s) 258, 304, 424
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 140, 239
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 1 cut(s) 740
BstSCI CCNGG 1 cut(s) 738
BstSFI CTRYAG 3 cut(s) 238, 435, 704
BstV1I GCAGC 2 cut(s) 224, 608
BstZ17I GTATAC 1 cut(s) 482
BsuRI GGCC 2 cut(s) 318, 589
BtsCI GGATG 3 cut(s) 258, 304, 424
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 516
Cac8I GCNNGC 2 cut(s) 452, 456
CaiI CAGNNNCTG 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 188, 317
Csp6I GTAC 3 cut(s) 390, 727, 779
CviAII CATG 2 cut(s) 152, 654
CviJI RGCY 8 cut(s) 56, 78, 318, 385, 458, 477, 534, 589
CviKI_1 RGCY 8 cut(s) 56, 78, 318, 385, 458, 477, 534, 589
CviQI GTAC 3 cut(s) 390, 727, 779
DdeI CTNAG 4 cut(s) 70, 321, 386, 627
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 579
Eam1104I CTCTTC 5 cut(s) 35, 320, 375, 435, 492
EarI CTCTTC 5 cut(s) 35, 320, 375, 435, 492
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 2 cut(s) 155, 657
FaiI YATR 7 cut(s) 153, 372, 482, 645, 655, 672, 722
FaqI GGGAC 2 cut(s) 174, 592
FatI CATG 2 cut(s) 151, 653
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 238, 622
FokI GGATG 3 cut(s) 245, 311, 431
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 238, 622
GluI GCNGC 2 cut(s) 238, 622
HaeIII GGCC 2 cut(s) 318, 589
Hin1II CATG 2 cut(s) 155, 657
HinfI GANTC 3 cut(s) 11, 428, 667
HphI GGTGA 2 cut(s) 6, 110
Hpy166II GTNNAC 2 cut(s) 413, 482
Hpy188I TCNGA 6 cut(s) 10, 214, 364, 562, 603, 762
Hpy188III TCNNGA 2 cut(s) 341, 553
Hpy8I GTNNAC 2 cut(s) 413, 482
HpyAV CCTTC 5 cut(s) 15, 67, 95, 101, 620
HpyCH4III ACNGT 1 cut(s) 783
HpyCH4V TGCA 8 cut(s) 240, 302, 370, 584, 706, 733, 748, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 4 cut(s) 70, 321, 386, 627
Hsp92II CATG 2 cut(s) 155, 657
Kzo9I GATC 1 cut(s) 332
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 2 cut(s) 224, 608
LweI GCATC 2 cut(s) 267, 289
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 5 cut(s) 279, 365, 556, 710, 743
MnlI CCTC 5 cut(s) 38, 159, 517, 636, 780
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 5 cut(s) 282, 293, 398, 492, 578
MslI CAYNNNNRTG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 740
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 740
MwoI GCNNNNNNNGC 1 cut(s) 540
NdeII GATC 1 cut(s) 332
NlaIII CATG 2 cut(s) 155, 657
NlaIV GGNNCC 2 cut(s) 79, 190
PceI AGGCCT 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 11, 428, 667
PkrI GCNGC 2 cut(s) 239, 623
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 79, 190
PspPI GGNCC 2 cut(s) 188, 317
PstI CTGCAG 2 cut(s) 242, 708
PstNI CAGNNNCTG 1 cut(s) 477
RsaI GTAC 3 cut(s) 391, 728, 780
RsaNI GTAC 3 cut(s) 390, 727, 779
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 5 cut(s) 282, 293, 398, 492, 578
SatI GCNGC 2 cut(s) 238, 622
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 2 cut(s) 188, 317
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 740
SduI GDGCHC 1 cut(s) 387
SetI ASST 5 cut(s) 170, 387, 479, 536, 576
SfaNI GCATC 2 cut(s) 267, 289
SfcI CTRYAG 3 cut(s) 238, 435, 704
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 642
Sse9I AATT 5 cut(s) 279, 365, 556, 710, 743
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 2 cut(s) 81, 377
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 589
StyD4I CCNGG 1 cut(s) 738
TaaI ACNGT 1 cut(s) 783
TaqI TCGA 3 cut(s) 90, 164, 772
TasI AATT 5 cut(s) 279, 365, 556, 710, 743
TatI WGTACW 2 cut(s) 389, 726
TfiI GAWTC 3 cut(s) 11, 428, 667
Tru1I TTAA 5 cut(s) 282, 293, 398, 492, 578
Tru9I TTAA 5 cut(s) 282, 293, 398, 492, 578
TscAI CASTG 2 cut(s) 247, 516
TseI GCWGC 2 cut(s) 237, 621
TspDTI ATGAA 4 cut(s) 510, 642, 659, 713
TspRI CASTG 2 cut(s) 247, 516
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 556, 710
XmiI GTMKAC 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.