FvH4_4g35380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014338
Physical Location & Seq
Forward (+)
32719834 .. 32721778
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35380.t1

Sequence Viewer

Length: 624 bp
ATGCCTTCAGATTCACCGTTCTTTCTGATCCTCCTCTTCTTCTTCTCCACAGCCTTCGCTCTGCTCTCAGTTGGCTACGCCACAATCGAAGATGGTGAAGATGGAAGGATTGGAAGTAGAACGCTTCTGGGTCTGAAAGAGAGCCCTCATGGAACTAACGCGACCTATGAATGCTCTCCCAATGGTCCCTGCGTTGCTTGCCAATACTCTGAAAAGAACAATGATGAGTATCGCTGCAGTGAGACTGGCTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGATTAAAGGATGCAAAAGCAAAGAAAGACCCTAAAAAGATTAGATCAACTCTGGAAGTTTCCAACATGTCAGAATTGCATAATGCGGAAGAGCTCGGTATACTTTTAAAGCGTAGAAGTTTATTGGATGATTCTTCTACACAAGAGAATGAGCAACAGGGTTATATTACTTACAGAAGCTGTATACCAGCAGTTAATGAAGAAAAGTTGTCAGTGCTTGGTTTCGAGGTGATTGTGCTGTGTTTGCTAGTCATAAGTGGTTCTATTGTATACTTCAAGAAAAGGCAGACAACTACAATGGCAGGATTTTCCCGAATTCAGAGCAATGCAAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.09

Weight (kDa)

6.74

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 385, 469, 555
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 600
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 2 cut(s) 265, 562
AluBI AGCT 2 cut(s) 379, 465
AluI AGCT 2 cut(s) 379, 465
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 6, 107, 526
AvaII GGWCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 146, 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 86, 95
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 2 cut(s) 264, 286
BsaBI GATNNNNATC 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 228
BseGI GGATG 3 cut(s) 255, 301, 418
BseJI GATNNNNATC 1 cut(s) 228
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 146, 381
Bsp143I GATC 2 cut(s) 27, 329
BspACI CCGC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 27, 329
BssNAI GTATAC 3 cut(s) 386, 470, 556
Bst1107I GTATAC 3 cut(s) 386, 470, 556
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 41, 369
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 3 cut(s) 255, 301, 418
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 2 cut(s) 30, 332
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 27, 329
BstMWI GCNNNNNNNGC 2 cut(s) 198, 529
BstNSI RCATGY 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 221
BstZ17I GTATAC 3 cut(s) 386, 470, 556
BtsCI GGATG 3 cut(s) 255, 301, 418
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 244, 504
Cac8I GCNNGC 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 2 cut(s) 149, 352
CviJI RGCY 6 cut(s) 53, 75, 144, 249, 379, 465
CviKI_1 RGCY 6 cut(s) 53, 75, 144, 249, 379, 465
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 29, 331
DpnII GATC 2 cut(s) 27, 329
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 41, 369
EarI CTCTTC 2 cut(s) 41, 369
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 2 cut(s) 146, 381
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 146, 381
FaeI CATG 2 cut(s) 152, 355
FaiI YATR 9 cut(s) 150, 168, 353, 366, 386, 450, 470, 539, 556
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 148, 351
FblI GTMKAC 3 cut(s) 385, 469, 555
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 3 cut(s) 242, 308, 425
FriOI GRGCYC 2 cut(s) 146, 381
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 152, 355
HinfI GANTC 2 cut(s) 11, 416
HphI GGTGA 3 cut(s) 6, 107, 526
Hpy166II GTNNAC 3 cut(s) 386, 470, 556
Hpy188I TCNGA 6 cut(s) 10, 27, 135, 211, 358, 606
Hpy188III TCNNGA 3 cut(s) 338, 562, 597
Hpy8I GTNNAC 3 cut(s) 386, 470, 556
HpyAV CCTTC 3 cut(s) 15, 64, 99
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 237, 299, 364, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 529
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 2 cut(s) 152, 355
Kzo9I GATC 2 cut(s) 27, 329
LguI GCTCTTC 1 cut(s) 369
LpnPI CCDG 7 cut(s) 113, 202, 231, 323, 428, 486, 573
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 264, 286
MaeI CTAG 1 cut(s) 533
MalI GATC 2 cut(s) 29, 331
MboI GATC 2 cut(s) 27, 329
MboII GAAGA 8 cut(s) 28, 31, 34, 101, 110, 386, 411, 497
MhlI GDGCHC 2 cut(s) 146, 381
MluCI AATT 3 cut(s) 276, 359, 600
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 4 cut(s) 41, 44, 156, 505
MseI TTAA 5 cut(s) 279, 290, 392, 480, 622
Mva1269I GAATGC 1 cut(s) 176
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 198, 529
NdeII GATC 2 cut(s) 27, 329
NlaIII CATG 2 cut(s) 152, 355
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 355
PciI ACATGT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 11, 416
PkrI GCNGC 1 cut(s) 236
PscI ACATGT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 465
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 5 cut(s) 279, 290, 392, 480, 622
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 27, 329
Sau96I GGNCC 1 cut(s) 185
SduI GDGCHC 2 cut(s) 146, 381
SetI ASST 5 cut(s) 167, 381, 467, 516, 620
SfaNI GCATC 2 cut(s) 264, 286
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 185
Sse9I AATT 3 cut(s) 276, 359, 600
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 1 cut(s) 381
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 87, 510
TasI AATT 3 cut(s) 276, 359, 600
TfiI GAWTC 2 cut(s) 11, 416
Tru1I TTAA 5 cut(s) 279, 290, 392, 480, 622
Tru9I TTAA 5 cut(s) 279, 290, 392, 480, 622
TscAI CASTG 2 cut(s) 244, 504
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 183, 498
TspRI CASTG 2 cut(s) 244, 504
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 600
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 3 cut(s) 385, 469, 555
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.