Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000285.1

Orthogroup ID

OG0014338

Physical Location & Seq

Genomic Coordinates Reverse (-)

5864 .. 7477

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000285.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggtgaaggcgaagggattggaagtagaacgcttctgggtctcaaagaaacccctcatggaactaactcgacctttgaatgctctcctaatgaacaatgagaagtatcgctgcagtgagactggctatcgcatccctttgaaatgtgtggaaattaagcaagggttcaaggatgcaaaggcaaagataggccctaagaagagtagatcaactctggaagtttcccacaacatttcagaattgcataatgcggaagagctcggtactctcttaaagcatagaagtttactggatgattcttctacagaagagaatggcaagcaggcttacattacttacagaagctgtataccaccagttaatgaagagaagttgtcagtgcttggttttgaggtgattgtcctgtgtttgctagtcattagtggttctattgtatacttcaaaaaaaggcagacagctacaatggcaggattttcccgaattcagagcaacgcaaggttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

9.47

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69980
fragaria_vesca	FvH4_4g35380 FvH4_4g35380
malus_domestica	MD16G1083100.v1.1
prunus_persica	Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis	pycom16g07200
rosa_chinensis	RchiOBHm_Chr4g0444991
rosa_laevigata	RLG00000005779
rosa_multiflora	Rmu_ssc0000285.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385500
rosa_rugosa	Rorug04G0357100 Rorug04G0357200
rosa_samantha	Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana	Rw4G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	349, 435
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	480
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	79, 142, 169, 442
AluBI	AGCT	3 cut(s)	259, 345, 458
AluI	AGCT	3 cut(s)	259, 345, 458
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	46, 113
AlwNI	CAGNNNCTG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	16, 406
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	46, 113
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	112, 303
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	191
BmsI	GCATC	2 cut(s)	141, 163
BsaI	GGTCTC	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	127, 294, 356
BseGI	GGATG	3 cut(s)	132, 178, 298
BseNI	ACTGG	3 cut(s)	127, 294, 356
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	46, 113
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	127, 294, 356
BssMI	GATC	1 cut(s)	206
BssNAI	GTATAC	2 cut(s)	350, 436
Bst1107I	GTATAC	2 cut(s)	350, 436
Bst6I	CTCTTC	4 cut(s)	194, 249, 303, 360
BstC8I	GCNNGC	2 cut(s)	320, 324
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	132, 178, 298
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	2 cut(s)	46, 113
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	112, 303
BstV1I	GCAGC	1 cut(s)	98
BstZ17I	GTATAC	2 cut(s)	350, 436
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	132, 178, 298
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	121, 384
Cac8I	GCNNGC	2 cut(s)	320, 324
CaiI	CAGNNNCTG	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	6 cut(s)	126, 192, 259, 326, 345, 458
CviKI_1	RGCY	6 cut(s)	126, 192, 259, 326, 345, 458
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eam1104I	CTCTTC	4 cut(s)	194, 249, 303, 360
EarI	CTCTTC	4 cut(s)	194, 249, 303, 360
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	1 cut(s)	61
FaiI	YATR	5 cut(s)	59, 246, 279, 350, 436
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	2 cut(s)	349, 435
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	3 cut(s)	119, 185, 305
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	2 cut(s)	16, 406
Hpy166II	GTNNAC	3 cut(s)	287, 350, 436
Hpy188I	TCNGA	2 cut(s)	238, 486
Hpy188III	TCNNGA	2 cut(s)	215, 477
Hpy8I	GTNNAC	3 cut(s)	287, 350, 436
HpyAV	CCTTC	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	114, 176, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	206
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	8 cut(s)	22, 108, 200, 275, 308, 369, 416, 453
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	141, 163
MaeI	CTAG	1 cut(s)	413
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	5 cut(s)	211, 266, 291, 320, 377
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	153, 239, 480
MnlI	CCTC	2 cut(s)	65, 385
MseI	TTAA	4 cut(s)	156, 272, 360, 502
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	156, 272, 360, 502
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	6 cut(s)	76, 261, 347, 396, 460, 500
SfaNI	GCATC	2 cut(s)	141, 163
SfcI	CTRYAG	2 cut(s)	112, 303
Sse9I	AATT	3 cut(s)	153, 239, 480
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	261
TaqI	TCGA	1 cut(s)	70
TasI	AATT	3 cut(s)	153, 239, 480
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	4 cut(s)	156, 272, 360, 502
Tru9I	TTAA	4 cut(s)	156, 272, 360, 502
TscAI	CASTG	2 cut(s)	121, 384
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	107, 378
TspRI	CASTG	2 cut(s)	121, 384
XapI	RAATTY	1 cut(s)	480
XmiI	GTMKAC	2 cut(s)	349, 435
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.