Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Forward (+)

26814260 .. 26815922

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTTCTGCATTCGATCCCCTTGTCACGGCCACTGAGGATCTCGCCGCCGTCAACTCGGCGCCGCCACTCTCAAACCTCACGCAAGAAGAACTCAAGAAAATCGCCGCTTATAAAGCCGTCGAATTCGTCGAATCTGGAATGGTTATCGGTCTCGGCACTGGCTCCACCGCGAAACACGCCGTGGCTCGTATCAGCGAGCTTCTCCGAGAAGGAAAACTCAAGGATATAATCGGAATCCCTACTTCAACCACAACGCATGAGCAAGCGGTGTCTCTAGGGATACCATTATCCGATCTAGATTCGCATCCGGTGGTGGATCTATCAATCGATGGCGCCGACGAAGTCGATCCGGCTCTTAATCTGGTGAAAGGACGCGGCGGATCGTTATTGAGAGAGAAGATGATTGAAGGAGCATCTAAGAAGTTCGTTGTGATTGTTGATGAATCGAAGCTTGTCAAGTATATCGGAGGAAGCGGACTCGCTGTTCCGGTGGAGGTTGTTCCGTTCTGCTGCGATTTCACAAGGGGGAAACTGGAAGAGCTATTTAGAGATTCGGGATGTGTTGCGAAGCTGAGGATGAAAATCGGATCTAACGGCGAAGAGGCGGCGCCGGCTGTGACGGATAATAGGAATTATGTGGTGGATTTGTATTTGGAGAGAGATATTGGAGATTTAGAGGTGGCGAGTGAGGCGATATTGAGGTTTCCTGGAGTAGTGGAGCATGGGATGTTTCTGGGAATGGCGACTACGTTGATCGTCGCCGGCAAATTTGGTGTTACCGTCAAGGATAGGTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0006139 GO:0006213 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009116 GO:0009119 GO:0009163 GO:0009250 GO:0009628 GO:0009791 GO:0009987 GO:0010228 GO:0016051 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0022414 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034404 GO:0034637 GO:0034641 GO:0034645 GO:0034654 GO:0042455 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046108 GO:0046109 GO:0046131 GO:0046132 GO:0046134 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0051274 GO:0055086 GO:0061458 GO:0071704 GO:0072527 GO:0072528 GO:0080167 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

267

Amino Acids

28.33

Weight (kDa)

5.0

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	79 - 257	4.2e-57	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccB1I	GGYRCC	3 cut(s)	61, 335, 610
AccII	CGCG	2 cut(s)	173, 378
AciI	CCGC	9 cut(s)	48, 65, 108, 171, 269, 378, 381, 477, 608
AclWI	GGATC	6 cut(s)	11, 48, 327, 344, 391, 598
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	125, 770
AcyI	GRCGYC	3 cut(s)	62, 336, 611
AdeI	CACNNNGTG	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	249, 410
AjnI	CCWGG	1 cut(s)	709
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	4 cut(s)	202, 454, 544, 574
AluI	AGCT	4 cut(s)	202, 454, 544, 574
Alw26I	GTCTC	2 cut(s)	158, 279
AlwI	GGATC	6 cut(s)	11, 48, 327, 344, 391, 598
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	513
ApoI	RAATTY	2 cut(s)	125, 770
AspLEI	GCGC	3 cut(s)	64, 338, 613
AsuHPI	GGTGA	1 cut(s)	379
BanI	GGYRCC	3 cut(s)	61, 335, 610
BbvCI	CCTCAGC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	5 cut(s)	35, 45, 104, 167, 613
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	158, 279
BfaI	CTAG	2 cut(s)	278, 299
BfoI	RGCGCY	3 cut(s)	65, 339, 614
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	6 cut(s)	48, 65, 108, 379, 514, 609
BlsI	GCNGC	6 cut(s)	49, 66, 109, 380, 515, 610
Bme1390I	CCNGG	1 cut(s)	711
BmiI	GGNNCC	4 cut(s)	63, 166, 337, 612
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	2 cut(s)	316, 425
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	80, 206
Bsa29I	ATCGAT	1 cut(s)	330
BsaBI	GATNNNNATC	2 cut(s)	306, 584
BsaHI	GRCGYC	3 cut(s)	62, 336, 611
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	2 cut(s)	310, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	2 cut(s)	613, 764
Bse1I	ACTGG	2 cut(s)	166, 540
Bse8I	GATNNNNATC	2 cut(s)	306, 584
BseBI	CCWGG	1 cut(s)	711
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	4 cut(s)	307, 566, 585, 735
BseJI	GATNNNNATC	2 cut(s)	306, 584
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	27, 566
BseNI	ACTGG	2 cut(s)	166, 540
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	173, 378
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	3 cut(s)	61, 335, 610
BshVI	ATCGAT	1 cut(s)	330
BsiSI	CCGG	5 cut(s)	311, 353, 491, 614, 765
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	158, 279
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
BspACI	CCGC	9 cut(s)	48, 65, 108, 171, 269, 378, 381, 477, 608
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	28, 567
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	2 cut(s)	173, 378
BspLI	GGNNCC	4 cut(s)	63, 166, 337, 612
BspPI	GGATC	6 cut(s)	11, 48, 327, 344, 391, 598
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	3 cut(s)	61, 335, 610
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	613, 764
BsrI	ACTGG	2 cut(s)	166, 540
BssAI	RCCGGY	2 cut(s)	613, 764
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
BssNI	GRCGYC	3 cut(s)	62, 336, 611
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	2 cut(s)	534, 597
BstACI	GRCGYC	3 cut(s)	62, 336, 611
BstC8I	GCNNGC	4 cut(s)	200, 267, 615, 766
BstDEI	CTNAG	3 cut(s)	36, 420, 575
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	307, 566, 585, 735
BstFNI	CGCG	2 cut(s)	173, 378
BstH2I	RGCGCY	3 cut(s)	65, 339, 614
BstHHI	GCGC	3 cut(s)	64, 338, 613
BstKTI	GATC	8 cut(s)	19, 43, 298, 322, 352, 386, 593, 759
BstMAI	GTCTC	2 cut(s)	158, 279
BstMBI	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 179, 614, 692
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	709
BstUI	CGCG	2 cut(s)	173, 378
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	3 cut(s)	40, 319, 590
BstYI	RGATCY	3 cut(s)	40, 319, 590
Bsu15I	ATCGAT	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	307, 566, 585, 735
BtsIMutI	CAGTG	2 cut(s)	33, 159
Cac8I	GCNNGC	4 cut(s)	200, 267, 615, 766
CfoI	GCGC	3 cut(s)	64, 338, 613
Cfr10I	RCCGGY	2 cut(s)	613, 764
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	1 cut(s)	384
CviAII	CATG	2 cut(s)	260, 725
DdeI	CTNAG	3 cut(s)	36, 420, 575
DinI	GGCGCC	3 cut(s)	63, 337, 612
DpnI	GATC	8 cut(s)	18, 42, 297, 321, 351, 385, 592, 758
DpnII	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	534, 597
EarI	CTCTTC	2 cut(s)	534, 597
EciI	GGCGGA	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	709
EgeI	GGCGCC	3 cut(s)	63, 337, 612
EheI	GGCGCC	3 cut(s)	63, 337, 612
FaeI	CATG	2 cut(s)	263, 728
FaiI	YATR	6 cut(s)	114, 230, 261, 465, 639, 726
FatI	CATG	2 cut(s)	259, 724
Fnu4HI	GCNGC	6 cut(s)	48, 65, 108, 379, 514, 609
FokI	GGATG	4 cut(s)	294, 573, 592, 742
Fsp4HI	GCNGC	6 cut(s)	48, 65, 108, 379, 514, 609
FspBI	CTAG	2 cut(s)	278, 299
GlaI	GCGC	3 cut(s)	63, 337, 612
GluI	GCNGC	6 cut(s)	48, 65, 108, 379, 514, 609
GsuI	CTGGAG	1 cut(s)	732
HaeII	RGCGCY	3 cut(s)	65, 339, 614
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	5 cut(s)	311, 353, 491, 614, 765
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	3 cut(s)	64, 338, 613
Hin1I	GRCGYC	3 cut(s)	62, 336, 611
Hin1II	CATG	2 cut(s)	263, 728
Hin6I	GCGC	3 cut(s)	62, 336, 611
HinP1I	GCGC	3 cut(s)	62, 336, 611
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	6 cut(s)	134, 237, 302, 446, 480, 554
HpaII	CCGG	5 cut(s)	311, 353, 491, 614, 765
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	209, 236, 295, 470, 590
Hpy188III	TCNNGA	4 cut(s)	97, 138, 299, 558
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	4 cut(s)	125, 134, 344, 764
HpyAV	CCTTC	2 cut(s)	206, 404
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	1 cut(s)	752
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 179, 614, 692
HpyF3I	CTNAG	3 cut(s)	36, 420, 575
HpySE526I	ACGT	1 cut(s)	752
Hsp92I	GRCGYC	3 cut(s)	62, 336, 611
Hsp92II	CATG	2 cut(s)	263, 728
HspAI	GCGC	3 cut(s)	62, 336, 611
KasI	GGCGCC	3 cut(s)	61, 335, 610
KroI	GCCGGC	2 cut(s)	613, 764
KroNI	GCCGGC	2 cut(s)	615, 766
Kzo9I	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	170, 413, 721
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	316, 425
MaeI	CTAG	2 cut(s)	278, 299
MaeII	ACGT	1 cut(s)	752
MaeIII	GTNAC	3 cut(s)	25, 619, 778
MalI	GATC	8 cut(s)	18, 42, 297, 321, 351, 385, 592, 758
MboI	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
MboII	GAAGA	4 cut(s)	101, 412, 551, 614
MflI	RGATCY	3 cut(s)	40, 319, 590
MluCI	AATT	3 cut(s)	125, 634, 770
Mly113I	GGCGCC	3 cut(s)	62, 336, 611
MlyI	GAGTC	1 cut(s)	474
MnlI	CCTC	9 cut(s)	31, 89, 464, 490, 570, 598, 673, 685, 696
MroNI	GCCGGC	2 cut(s)	613, 764
MseI	TTAA	1 cut(s)	360
MspI	CCGG	5 cut(s)	311, 353, 491, 614, 765
MspR9I	CCNGG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	2 cut(s)	173, 378
MwoI	GCNNNNNNNGC	4 cut(s)	116, 179, 614, 692
NaeI	GCCGGC	2 cut(s)	615, 766
NarI	GGCGCC	3 cut(s)	62, 336, 611
NdeII	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
NgoMIV	GCCGGC	2 cut(s)	613, 764
NlaIII	CATG	2 cut(s)	263, 728
NlaIV	GGNNCC	4 cut(s)	63, 166, 337, 612
NmeAIII	GCCGAG	2 cut(s)	38, 135
NmuCI	GTSAC	2 cut(s)	25, 619
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 336
PctI	GAATGC	1 cut(s)	11
PdiI	GCCGGC	2 cut(s)	615, 766
PfeI	GAWTC	5 cut(s)	134, 237, 302, 446, 554
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	6 cut(s)	49, 66, 109, 380, 515, 610
PleI	GAGTC	1 cut(s)	474
PluTI	GGCGCC	3 cut(s)	65, 339, 614
PpsI	GAGTC	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	4 cut(s)	63, 166, 337, 612
PsuI	RGATCY	3 cut(s)	40, 319, 590
PsyI	GACNNNGTC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	6 cut(s)	48, 65, 108, 379, 514, 609
Sau3AI	GATC	8 cut(s)	16, 40, 295, 319, 349, 383, 590, 756
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	316, 425
SfoI	GGCGCC	3 cut(s)	63, 337, 612
SmlI	CTYRAG	2 cut(s)	95, 221
SmoI	CTYRAG	2 cut(s)	95, 221
Sse9I	AATT	3 cut(s)	125, 634, 770
SsiI	CCGC	9 cut(s)	48, 65, 108, 171, 269, 378, 381, 477, 608
SspDI	GGCGCC	3 cut(s)	61, 335, 610
SspMI	CTAG	2 cut(s)	278, 299
StyD4I	CCNGG	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	1 cut(s)	755
TaqI	TCGA	6 cut(s)	15, 123, 132, 330, 348, 449
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	125, 634, 770
TauI	GCSGC	5 cut(s)	50, 67, 110, 381, 611
TfiI	GAWTC	5 cut(s)	134, 237, 302, 446, 554
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	40, 166
TseFI	GTSAC	2 cut(s)	25, 619
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	2 cut(s)	25, 619
TspDTI	ATGAA	2 cut(s)	459, 596
TspGWI	ACGGA	2 cut(s)	495, 638
TspRI	CASTG	2 cut(s)	40, 166
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	125, 770
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	2 cut(s)	278, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.