Rh2CG240100

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005658
Physical Location & Seq
Reverse (-)
25010456 .. 25010836
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG240100.1

Sequence Viewer

Length: 381 bp
ATGGTGGAGGGCGCGTGTAAGAAGTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTTGACTACCTCGGCGGCTCCGGCCTGGCCATGCCGGTGGAGGTGGTGCCGTTCTGCTGGAAATTCACGGCCAAAATGCTGCAGGACTTGTTCCGAAACTCCGGCTGCGTTGCGAAGCTCAAGTGTGGGGAGAGTGGGGAGCCGTTTGTGACGGATAATGGGAATTACATTGTGGATATGTATTTCAAGAAGGATATTGGGGATTTGAGAGCTGCAAGTGAGGCCATTTTGCGGCTCGCCGGAGTTGTGGAGCATGGGATGTTTCTGGATATGGCGACTACTGTGATTGTGGCGAGGGAGCTTGGGATCACGGTGAAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

5.82

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 1 - 118 7.8e-33 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 69, 286
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 2 cut(s) 81, 123
AcsI RAATTY 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 4 cut(s) 52, 172, 266, 355
AluI AGCT 4 cut(s) 52, 172, 266, 355
AlwI GGATC 1 cut(s) 368
AoxI GGCC 4 cut(s) 76, 81, 123, 276
ApeKI GCWGC 3 cut(s) 133, 159, 266
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 379
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 120, 146, 253
BceAI ACGGC 3 cut(s) 88, 138, 181
BciT130I CCWGG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 5 cut(s) 70, 134, 160, 267, 287
BlsI GCNGC 5 cut(s) 71, 135, 161, 268, 288
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 3 cut(s) 73, 102, 195
BmrFI CCNGG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 64
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 88
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 120, 146, 253
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 4 cut(s) 78, 83, 125, 278
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 4 cut(s) 75, 89, 156, 294
BslI CCNNNNNNNGG 1 cut(s) 285
BsnI GGCC 4 cut(s) 78, 83, 125, 278
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 2 cut(s) 69, 286
BspANI GGCC 4 cut(s) 78, 83, 125, 278
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 73, 102, 195
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 337, 367
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 75, 275
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 134
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 120, 146, 253
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuRI GGCC 4 cut(s) 78, 83, 125, 278
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 88
CviAII CATG 2 cut(s) 85, 308
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
EaeI YGGCCR 2 cut(s) 81, 123
EcoRII CCWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 88, 311
FaiI YATR 4 cut(s) 86, 233, 309, 326
FatI CATG 2 cut(s) 84, 307
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 5 cut(s) 70, 134, 160, 267, 287
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 5 cut(s) 70, 134, 160, 267, 287
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 70, 134, 160, 267, 287
HaeIII GGCC 4 cut(s) 78, 83, 125, 278
HapII CCGG 4 cut(s) 75, 89, 156, 294
HhaI GCGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 88, 311
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 2 cut(s) 40, 58
HindII GTYRAC 2 cut(s) 40, 58
HinfI GANTC 1 cut(s) 44
HpaII CCGG 4 cut(s) 75, 89, 156, 294
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 40, 58
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 241, 320
Hpy8I GTNNAC 2 cut(s) 40, 58
Hpy99I CGWCG 3 cut(s) 32, 41, 44
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 337, 367
HpyCH4V TGCA 2 cut(s) 136, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 275
Hsp92II CATG 2 cut(s) 88, 311
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 4 cut(s) 77, 193, 304, 352
LpnPI CCDG 9 cut(s) 65, 88, 92, 97, 102, 122, 169, 305, 307
Lsp1109I GCAGC 3 cut(s) 120, 146, 253
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 116, 217
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 4 cut(s) 74, 88, 268, 342
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 4 cut(s) 75, 89, 156, 294
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 75, 275
NdeII GATC 1 cut(s) 360
NlaIII CATG 2 cut(s) 88, 311
NlaIV GGNNCC 3 cut(s) 73, 102, 195
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 36
PkrI GCNGC 5 cut(s) 71, 135, 161, 268, 288
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 73, 102, 195
PstI CTGCAG 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 89
SalI GTCGAC 1 cut(s) 38
SatI GCNGC 5 cut(s) 70, 134, 160, 267, 287
Sau3AI GATC 1 cut(s) 360
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 80
SetI ASST 6 cut(s) 54, 66, 99, 174, 268, 357
SfcI CTRYAG 1 cut(s) 134
SgrDI CGTCGACG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 116, 217
SsiI CCGC 2 cut(s) 69, 286
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 337, 367
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 116, 217
TauI GCSGC 2 cut(s) 72, 289
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 133, 159, 266
Tsp45I GTSAC 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 221
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.