Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Forward (+)

28631444 .. 28637700

Gene Structure 6257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTGGAGGGTGCTTGCCGAAAATTTGTGGTCATTATCGATGAGTCCAAGCTTGTGAAGCATTTGGGTGGTAGTGGGCTGAGGACTTCAGATGCAAAGGGAAGACATTTTGGGGATTTGAAGGCGGCGAGTGATGCGATTTTGCAGCTTGCCGGAGTTGTGGAGCATGGGATGTTCTTGGACATAGCCACCACTATGATTGTTGCAGGGGAGCTTGGGATAATGGTGAAGAATAAGTCGGCAGTATTCAGTAATTTCATGAATCGAAGGAATTGTAAAGAAGATGCTCAGAGCAGCCCCAGCCGTGCCTTGGAGAACACGCTTGGAGTGAGAACAGTCCCTGGCTTAAATTACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

119

Amino Acids

12.79

Weight (kDa)

9.06

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	52, 148, 214
AluI	AGCT	3 cut(s)	52, 148, 214
AlwNI	CAGNNNCTG	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	145, 294
ApoI	RAATTY	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	157, 306
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	342
BisI	GCNGC	3 cut(s)	126, 146, 295
BlsI	GCNGC	3 cut(s)	127, 147, 296
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	82, 124, 274
BpiI	GAAGAC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	309, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	309, 340
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	71, 302
BseXI	GCAGC	2 cut(s)	157, 306
BseYI	CCCAGC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	323
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	72, 301
BspDI	ATCGAT	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	309, 340
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	16, 150
BstDEI	CTNAG	2 cut(s)	80, 288
BstF5I	GGATG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 134, 300
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	157, 306
BstV2I	GAAGAC	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	16, 150
CaiI	CAGNNNCTG	1 cut(s)	341
CciI	TCATGA	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	167, 259
CviJI	RGCY	8 cut(s)	52, 79, 148, 188, 214, 297, 303, 345
CviKI_1	RGCY	8 cut(s)	52, 79, 148, 188, 214, 297, 303, 345
DdeI	CTNAG	2 cut(s)	80, 288
Eco130I	CCWWGG	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	170, 262
FaiI	YATR	4 cut(s)	168, 185, 197, 260
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	166, 258
Fnu4HI	GCNGC	3 cut(s)	126, 146, 295
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	126, 146, 295
GluI	GCNGC	3 cut(s)	126, 146, 295
GsaI	CCCAGC	1 cut(s)	303
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	170, 262
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	2 cut(s)	44, 262
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	91, 291
Hpy188III	TCNNGA	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	115, 261
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	95, 145, 206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 134, 300
HpyF3I	CTNAG	2 cut(s)	80, 288
Hsp92II	CATG	2 cut(s)	170, 262
LmnI	GCTCC	2 cut(s)	163, 211
LpnPI	CCDG	5 cut(s)	166, 192, 313, 327, 354
Lsp1109I	GCAGC	2 cut(s)	157, 306
LweI	GCATC	3 cut(s)	82, 124, 274
MboII	GAAGA	3 cut(s)	114, 241, 293
MluCI	AATT	4 cut(s)	23, 253, 271, 349
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	66, 194
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	58, 134, 300
NlaIII	CATG	2 cut(s)	170, 262
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	127, 147, 296
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	341
RseI	CAYNNNNRTG	2 cut(s)	66, 194
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	3 cut(s)	126, 146, 295
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	3 cut(s)	54, 150, 216
SfaNI	GCATC	3 cut(s)	82, 124, 274
SmiMI	CAYNNNNRTG	2 cut(s)	66, 194
Sse9I	AATT	4 cut(s)	23, 253, 271, 349
SsiI	CCGC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	39, 265
TasI	AATT	4 cut(s)	23, 253, 271, 349
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseI	GCWGC	2 cut(s)	145, 294
TspDTI	ATGAA	2 cut(s)	247, 275
XapI	RAATTY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.