Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Reverse (-)

148919 .. 150585

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGCTTGCGTATGATCCTCTCTTCATTACATCGGACAAATCTTTGTCCGCCTTTGATGTTGCCTCTTCACCGCCTCAGCCCATGAATTTAACACAAGACGAGCTCAAACGTATCGCCGCTTACAAAGCCGTGGAATTCGTCGAGTCCGGCATGGTTCTCGGTCTCGGAACCGGCTCCACCGCCAAACACGCCGTCGACCGAATCGGCGAGCTTCTCCGTCAAGGCAAACTCGAGAACATCGTTGGTATACCAACGTCTAAGAAGACGCAGGAGCAGGCTCTGTCTCTCGGCATCCCTCTCTCTGATCTCGACGCACACCCTGTCATCGATCTCTCCATCGACGGCGCAGACGAGGTCGACCCTTTTCTCAACCTGGTAAAAGGCAGAGGAGGGTCTCTGCTTCGAGAGAAGATGATCGAAGGAGCTTCTAAGAAGTTTGTGGTGATTGTTGACGACTCCAAGATGGTGAAGCATATTGGTGGAAGCAAGCTTGCTCTTCCGGTGGAGATAGTGCCCTTTTGCTGGAAGTTCACGGCGGAGAAGCTCCGGAGTCTGCTGGAAGGATACGGGTGTGAAGCGAATCTTCGGTTGGGAGAGAAAGGGAAGGCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATGTGGAAGAGGATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTACCGGGAGTAGTGGAACATGGGATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTGTTAAGATCAAGAACAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0006139 GO:0006213 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009116 GO:0009119 GO:0009163 GO:0009250 GO:0009628 GO:0009791 GO:0009987 GO:0010228 GO:0016051 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0022414 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034404 GO:0034637 GO:0034641 GO:0034645 GO:0034654 GO:0042455 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046108 GO:0046109 GO:0046131 GO:0046132 GO:0046134 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0051274 GO:0055086 GO:0061458 GO:0071704 GO:0072527 GO:0072528 GO:0080167 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

265

Amino Acids

28.52

Weight (kDa)

5.32

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	82 - 256	9.1e-62	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	752
AccI	GTMKAC	3 cut(s)	198, 250, 360
AccIII	TCCGGA	1 cut(s)	549
AciI	CCGC	5 cut(s)	51, 74, 120, 183, 539
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	88, 137
AfiI	CCNNNNNNNGG	1 cut(s)	525
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	6 cut(s)	106, 214, 428, 493, 547, 769
AluI	AGCT	6 cut(s)	106, 214, 428, 493, 547, 769
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	170, 291, 402
AlwI	GGATC	1 cut(s)	11
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	549
AoxI	GGCC	1 cut(s)	609
ApoI	RAATTY	2 cut(s)	88, 137
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AspLEI	GCGC	2 cut(s)	7, 350
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	4 cut(s)	63, 457, 481, 776
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	519
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	347, 460
BceAI	ACGGC	4 cut(s)	116, 179, 361, 552
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	170, 291, 402
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	377, 708
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	172, 178
BmrFI	CCNGG	2 cut(s)	377, 708
BmsI	GCATC	2 cut(s)	303, 679
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	330
BsaI	GGTCTC	2 cut(s)	170, 402
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	2 cut(s)	502, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	756
BseAI	TCCGGA	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	294, 732
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	92, 689
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	150, 174, 503, 550, 707
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	3 cut(s)	170, 291, 402
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	2 cut(s)	170, 402
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	108, 519
Bsp13I	TCCGGA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	16, 307, 331, 417, 780
BspACI	CCGC	5 cut(s)	51, 74, 120, 183, 539
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	2 cut(s)	91, 690
BspDI	ATCGAT	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	172, 178
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	504
BspTNI	GGTCTC	2 cut(s)	170, 402
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	16, 307, 331, 417, 780
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	4 cut(s)	29, 73, 504, 651
BstC8I	GCNNGC	5 cut(s)	9, 212, 279, 491, 495
BstDEI	CTNAG	4 cut(s)	78, 261, 432, 698
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	294, 732
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 350
BstKTI	GATC	5 cut(s)	19, 310, 334, 420, 783
BstMAI	GTCTC	3 cut(s)	170, 291, 402
BstMBI	GATC	5 cut(s)	16, 307, 331, 417, 780
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 191
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	375, 706
BstSLI	GKGCMC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	294, 732
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	687, 793
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	5 cut(s)	9, 212, 279, 491, 495
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	2 cut(s)	7, 350
Cfr10I	RCCGGY	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	2 cut(s)	277, 323
CsiI	ACCWGGT	1 cut(s)	375
CviAII	CATG	4 cut(s)	85, 154, 650, 722
DdeI	CTNAG	4 cut(s)	78, 261, 432, 698
DpnI	GATC	5 cut(s)	18, 309, 333, 419, 782
DpnII	GATC	5 cut(s)	16, 307, 331, 417, 780
Eam1104I	CTCTTC	4 cut(s)	29, 73, 504, 651
EarI	CTCTTC	4 cut(s)	29, 73, 504, 651
EciI	GGCGGA	2 cut(s)	40, 554
Ecl136II	GAGCTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	2 cut(s)	170, 402
Eco53kI	GAGCTC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	4 cut(s)	88, 157, 653, 725
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	4 cut(s)	84, 153, 649, 721
FblI	GTMKAC	3 cut(s)	198, 250, 360
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	281, 739
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	2 cut(s)	6, 349
GluI	GCNGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	5 cut(s)	150, 174, 503, 550, 707
HgaI	GACGC	2 cut(s)	277, 323
HhaI	GCGC	2 cut(s)	7, 350
Hin1II	CATG	4 cut(s)	88, 157, 653, 725
Hin6I	GCGC	2 cut(s)	5, 348
HinP1I	GCGC	2 cut(s)	5, 348
HincII	GTYRAC	3 cut(s)	199, 361, 454
HindII	GTYRAC	3 cut(s)	199, 361, 454
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	146, 204, 458, 553, 583, 694
HpaII	CCGG	5 cut(s)	150, 174, 503, 550, 707
HphI	GGTGA	4 cut(s)	63, 457, 481, 776
Hpy166II	GTNNAC	5 cut(s)	199, 251, 361, 454, 534
Hpy188I	TCNGA	4 cut(s)	37, 170, 307, 699
Hpy188III	TCNNGA	6 cut(s)	235, 311, 407, 550, 734, 784
Hpy8I	GTNNAC	5 cut(s)	199, 251, 361, 454, 534
Hpy99I	CGWCG	4 cut(s)	146, 200, 317, 347
HpyAV	CCTTC	3 cut(s)	416, 557, 601
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	2 cut(s)	112, 257
HpyCH4V	TGCA	2 cut(s)	649, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 191
HpyF3I	CTNAG	4 cut(s)	78, 261, 432, 698
HpySE526I	ACGT	2 cut(s)	112, 257
Hsp92II	CATG	4 cut(s)	88, 157, 653, 725
HspAI	GCGC	2 cut(s)	5, 348
Kpn2I	TCCGGA	1 cut(s)	549
Kzo9I	GATC	5 cut(s)	16, 307, 331, 417, 780
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	5 cut(s)	182, 274, 425, 552, 677
LweI	GCATC	2 cut(s)	303, 679
MabI	ACCWGGT	1 cut(s)	375
MaeII	ACGT	2 cut(s)	112, 257
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	5 cut(s)	18, 309, 333, 419, 782
MboI	GATC	5 cut(s)	16, 307, 331, 417, 780
MboII	GAAGA	7 cut(s)	16, 60, 277, 424, 491, 578, 668
MhlI	GDGCHC	2 cut(s)	108, 519
MluCI	AATT	3 cut(s)	88, 137, 631
MlyI	GAGTC	3 cut(s)	155, 452, 562
MnlI	CCTC	9 cut(s)	30, 76, 87, 309, 349, 383, 386, 652, 693
Mph1103I	ATGCAT	1 cut(s)	651
MroI	TCCGGA	1 cut(s)	549
MseI	TTAA	2 cut(s)	92, 777
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	5 cut(s)	150, 174, 503, 550, 707
MspR9I	CCNGG	2 cut(s)	377, 708
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	128, 191
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	5 cut(s)	16, 307, 331, 417, 780
NlaIII	CATG	4 cut(s)	88, 157, 653, 725
NlaIV	GGNNCC	2 cut(s)	172, 178
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	653
PaeR7I	CTCGAG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 351
PfeI	GAWTC	3 cut(s)	204, 583, 694
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	3 cut(s)	154, 452, 561
PpsI	GAGTC	3 cut(s)	154, 452, 561
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	172, 178
PstNI	CAGNNNCTG	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	108
SalI	GTCGAC	2 cut(s)	197, 359
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	92, 777
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	5 cut(s)	16, 307, 331, 417, 780
SchI	GAGTC	3 cut(s)	155, 452, 562
ScrFI	CCNGG	2 cut(s)	377, 708
SduI	GDGCHC	2 cut(s)	108, 519
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	303, 679
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	88, 137, 631
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	5 cut(s)	51, 74, 120, 183, 539
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	2 cut(s)	375, 706
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	2 cut(s)	115, 260
TaqI	TCGA	9 cut(s)	144, 198, 234, 312, 330, 342, 360, 406, 420
TaqII	GACCGA	2 cut(s)	152, 216
TasI	AATT	3 cut(s)	88, 137, 631
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	204, 583, 694
Tru1I	TTAA	2 cut(s)	92, 777
Tru9I	TTAA	2 cut(s)	92, 777
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	616
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	16, 101
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	687
Tth111I	GACNNNGTC	1 cut(s)	356
XapI	RAATTY	2 cut(s)	88, 137
XceI	RCATGY	1 cut(s)	653
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	3 cut(s)	198, 250, 360
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.