Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Reverse (-)

30819326 .. 30823372

Gene Structure 4047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G322200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGCTGGGATTTTGGTGTCTTCCCCAACCTCTTCCTCGCCTCTATCTACTCCCATTCCCTCTGTGATTCTAACCCAGGACGAGTTGAAGAAAATCGCAGCCTACAAAGCCGTGGAGTATGTCGAGTCTGGCATGGTCCTCGGCCTTGGCACCGGCTCCACCGCTAAGCACGCCGTGGACCGAATCGGTGAGCTTTTGCACCAGGGAAAGCTCCAGAACATCGTCGGAATACCCACTTCTAAGAAGACCCATGAACAAGCTCTGTCCGTGGGAATTCCATTGTCGGACCTCGATTCGCACCCTGTTCTTGATCTCGCGATCGATGGCGCCGATGAGGTCGATCCCCAGCTCAATTTGGTCAAAGGCCGAGGTGGGTCGCTATTGAGGGAAAAGATGGTTGAAGGTGCTTGTAGGAAATTTGTGGTTATCGTTGATGAGTCCAAGCTTGTTAAGCATTTGGGGGGCAGTGGGCTCGCTATGCCGGTTGAGATTGTGCCTTTTTGCTGGAAATTCACGGCCAAAAGGCTGCAAGACTTGTTTGAGGACGCGGGTTGTGTTGGAAAGCTCAGGACTTTTGGTGAAAATGGTGAGCCTTTTGTGACAGACAATGGGAATTACATTGTGGACTTGTATTTCAAGAAAGATATTGGGGATTTGAAGGCAGCCAGTGACACAATTTTGCAGCTTGCTGGAGTTGTTGAGCATGGAATGTTCCTGGACATGGCGACCACTGTGATTGTCGCAAGCGAGCTTGGTATCACGGTGAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

260

Amino Acids

27.65

Weight (kDa)

5.41

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	152, 329
AccII	CGCG	2 cut(s)	320, 551
AciI	CCGC	2 cut(s)	165, 551
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	3 cut(s)	276, 419, 512
AcyI	GRCGYC	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	91, 404, 640, 661
AjnI	CCWGG	3 cut(s)	78, 204, 717
AluBI	AGCT	9 cut(s)	8, 196, 214, 263, 352, 448, 568, 688, 754
AluI	AGCT	9 cut(s)	8, 196, 214, 263, 352, 448, 568, 688, 754
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	3 cut(s)	145, 367, 519
ApeKI	GCWGC	4 cut(s)	101, 529, 665, 685
ApoI	RAATTY	3 cut(s)	276, 419, 512
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	139, 181, 289
AsuHPI	GGTGA	4 cut(s)	203, 593, 602, 778
AvaII	GGWCC	3 cut(s)	139, 181, 289
BanI	GGYRCC	2 cut(s)	152, 329
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	2 cut(s)	15, 254
BbvI	GCAGC	4 cut(s)	113, 516, 677, 697
BccI	CCATC	2 cut(s)	320, 391
BceAI	ACGGC	3 cut(s)	98, 161, 534
BcgI	CGANNNNNNTGC	4 cut(s)	124, 158, 457, 491
BciT130I	CCWGG	3 cut(s)	80, 206, 719
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	4 cut(s)	102, 530, 666, 686
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	4 cut(s)	103, 531, 667, 687
Bme1390I	CCNGG	3 cut(s)	80, 206, 719
Bme18I	GGWCC	3 cut(s)	139, 181, 289
BmgT120I	GGNCC	3 cut(s)	139, 181, 289
BmiI	GGNNCC	3 cut(s)	154, 160, 331
BmrFI	CCNGG	3 cut(s)	80, 206, 719
BpiI	GAAGAC	2 cut(s)	15, 254
BpmI	CTGGAG	2 cut(s)	200, 714
Bpu10I	CCTNAGC	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	8 cut(s)	78, 114, 142, 148, 177, 205, 270, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse118I	RCCGGY	2 cut(s)	155, 484
Bse1I	ACTGG	1 cut(s)	669
BseBI	CCWGG	3 cut(s)	80, 206, 719
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	8 cut(s)	78, 114, 142, 148, 177, 205, 270, 370
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	669
BseXI	GCAGC	4 cut(s)	113, 516, 677, 697
BseYI	CCCAGC	2 cut(s)	8, 348
Bsh1236I	CGCG	2 cut(s)	320, 551
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	147, 369, 521
BshNI	GGYRCC	2 cut(s)	152, 329
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	156, 485
BslI	CCNNNNNNNGG	1 cut(s)	724
BsnI	GGCC	3 cut(s)	147, 369, 521
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	313, 321, 343
Bsp1720I	GCTNAGC	1 cut(s)	168
Bsp68I	TCGCGA	1 cut(s)	320
BspACI	CCGC	2 cut(s)	165, 551
BspANI	GGCC	3 cut(s)	147, 369, 521
BspCNI	CTCAG	1 cut(s)	582
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	320, 551
BspLI	GGNNCC	3 cut(s)	154, 160, 331
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	2 cut(s)	152, 329
BsrFI	RCCGGY	2 cut(s)	155, 484
BsrI	ACTGG	1 cut(s)	669
BssAI	RCCGGY	2 cut(s)	155, 484
BssECI	CCNNGG	8 cut(s)	78, 114, 142, 148, 177, 205, 270, 370
BssMI	GATC	3 cut(s)	313, 321, 343
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	3 cut(s)	80, 206, 719
Bst4CI	ACNGT	2 cut(s)	736, 766
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	5 cut(s)	174, 477, 690, 748, 752
BstDEI	CTNAG	3 cut(s)	168, 243, 569
BstDSI	CCRYGG	3 cut(s)	114, 177, 270
BstFNI	CGCG	2 cut(s)	320, 551
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	316, 324, 346
BstMBI	GATC	3 cut(s)	313, 321, 343
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 173, 454, 481
BstNI	CCWGG	3 cut(s)	80, 206, 719
BstSCI	CCNGG	3 cut(s)	78, 204, 717
BstUI	CGCG	2 cut(s)	320, 551
BstV1I	GCAGC	4 cut(s)	113, 516, 677, 697
BstV2I	GAAGAC	2 cut(s)	15, 254
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	147, 369, 521
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	3 cut(s)	114, 177, 270
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	475, 676, 732
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	5 cut(s)	174, 477, 690, 748, 752
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	155, 484
Cfr13I	GGNCC	3 cut(s)	139, 181, 289
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	4 cut(s)	136, 254, 707, 724
DdeI	CTNAG	3 cut(s)	168, 243, 569
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	3 cut(s)	315, 323, 345
DpnII	GATC	3 cut(s)	313, 321, 343
DraIII	CACNNNGTG	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	139, 181, 289
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	3 cut(s)	78, 204, 717
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	477
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	139, 257, 710, 727
FaiI	YATR	6 cut(s)	123, 137, 255, 482, 708, 725
FatI	CATG	4 cut(s)	135, 253, 706, 723
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	102, 530, 666, 686
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	102, 530, 666, 686
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	4 cut(s)	102, 530, 666, 686
GsaI	CCCAGC	2 cut(s)	12, 352
GsuI	CTGGAG	2 cut(s)	200, 714
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	147, 369, 521
HapII	CCGG	2 cut(s)	156, 485
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	139, 257, 710, 727
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	70, 128, 186, 296, 440
HpaII	CCGG	2 cut(s)	156, 485
HphI	GGTGA	4 cut(s)	203, 593, 602, 778
Hpy166II	GTNNAC	2 cut(s)	181, 628
Hpy188I	TCNGA	2 cut(s)	230, 289
Hpy188III	TCNNGA	5 cut(s)	217, 311, 319, 571, 640
Hpy8I	GTNNAC	2 cut(s)	181, 628
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	398, 655
HpyCH4III	ACNGT	2 cut(s)	736, 766
HpyCH4V	TGCA	3 cut(s)	202, 532, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 173, 454, 481
HpyF3I	CTNAG	3 cut(s)	168, 243, 569
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	139, 257, 710, 727
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	313, 321, 343
LmnI	GCTCC	2 cut(s)	164, 219
Lsp1109I	GCAGC	4 cut(s)	113, 516, 677, 697
MaeIII	GTNAC	2 cut(s)	601, 671
MalI	GATC	3 cut(s)	315, 323, 345
MboI	GATC	3 cut(s)	313, 321, 343
MboII	GAAGA	4 cut(s)	15, 27, 103, 259
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	276, 355, 419, 512, 616, 678
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	137, 449
MmeI	TCCRAC	3 cut(s)	208, 267, 541
MseI	TTAA	1 cut(s)	453
MspI	CCGG	2 cut(s)	156, 485
MspR9I	CCNGG	3 cut(s)	80, 206, 719
MvaI	CCWGG	3 cut(s)	80, 206, 719
MvnI	CGCG	2 cut(s)	320, 551
MwoI	GCNNNNNNNGC	4 cut(s)	110, 173, 454, 481
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	3 cut(s)	313, 321, 343
NlaIII	CATG	4 cut(s)	139, 257, 710, 727
NlaIV	GGNNCC	3 cut(s)	154, 160, 331
NmeAIII	GCCGAG	2 cut(s)	123, 395
NmuCI	GTSAC	2 cut(s)	601, 671
NruI	TCGCGA	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	70, 186, 296
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	4 cut(s)	103, 531, 667, 687
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	2 cut(s)	136, 448
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	2 cut(s)	136, 448
Psp6I	CCWGG	3 cut(s)	78, 204, 717
PspFI	CCCAGC	2 cut(s)	8, 348
PspGI	CCWGG	3 cut(s)	78, 204, 717
PspN4I	GGNNCC	3 cut(s)	154, 160, 331
PspPI	GGNCC	3 cut(s)	139, 181, 289
PvuI	CGATCG	1 cut(s)	324
RruI	TCGCGA	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	102, 530, 666, 686
Sau3AI	GATC	3 cut(s)	313, 321, 343
Sau96I	GGNCC	3 cut(s)	139, 181, 289
SchI	GAGTC	2 cut(s)	137, 449
ScrFI	CCNGG	3 cut(s)	80, 206, 719
SduI	GDGCHC	1 cut(s)	477
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	3 cut(s)	139, 181, 289
Sse9I	AATT	6 cut(s)	276, 355, 419, 512, 616, 678
SsiI	CCGC	2 cut(s)	165, 551
SspDI	GGCGCC	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	78, 204, 717
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	736, 766
TaqI	TCGA	4 cut(s)	126, 294, 324, 342
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	6 cut(s)	276, 355, 419, 512, 616, 678
TfiI	GAWTC	3 cut(s)	70, 186, 296
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	475, 676, 739
TseFI	GTSAC	2 cut(s)	601, 671
TseI	GCWGC	4 cut(s)	101, 529, 665, 685
Tsp45I	GTSAC	2 cut(s)	601, 671
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	3 cut(s)	475, 676, 739
VpaK11BI	GGWCC	3 cut(s)	139, 181, 289
XapI	RAATTY	3 cut(s)	276, 419, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.