Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Reverse (-)

54557598 .. 54558377

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG393900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGGTGCAATCTTGGTCCCTGCGCCGTCCTCTCCTCTATCTTCAACTTCTCTTCCCTCTGTGACTCTAACCCAAGATGAGCTGAAGAAAATCGCGGCCTACAAGGCCGTCGAGTACGTCGAGTCCGGCATGGTTCTCGGCCTCGGCACCGGCTCCACGGCCAAGCACGCCGTCGACCGAATCGGCGATCTCCTCCGCCAGGGGAAGCTCCACAACATTGTCGGAATACCCACCTCCAGGAAGACCCACGAGCAAGCTGTCTCCGTCGGAATCCCACTCGCCGACCTCGACTCCCATCCCGTCATCGATCTCGCCATCGACGGCGCCGACGAGGTGGACCCCTACCTGAACCTGGTCAAGGGCCGAGGTGGGTCTCTGCTGAGAGAGAAGATGGTGGAGGGTGCCTGCCGCAAATTTGTGGTCATTGTCGATGAGTCCAAGCTTGTGAAGCATTTGGGTGGTAGTGGGCTGGCTATGCCGGTGGAGATTGTGCCGTTTTGCTGGAAATTCACGGCCAGGCGGCTCCAGAACTTGTTTGAGGATTCGGGTTGTGTTGCGAAGCTGAGGACTTCTTCGGGGGCAAATGGTGAGCCTTATGTGACAGACAATGGGAACTACATTGTGGACCTGTATTTCAAGGAGGACATTGGGGATTTGAAGGCGGCGAGTGATGCGATTTTGCAGCTTGCTGGAGTTGTGGAGCATGGGATGTTCCTGGACATGGCCACCACTGTGATTGTTGCAGGAGAGATGGGGATAACGGTGAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

259

Amino Acids

27.57

Weight (kDa)

5.55

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	75 - 252	8.8e-63	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	149, 326, 404
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	98
AciI	CCGC	5 cut(s)	98, 199, 412, 523, 665
AcoI	YGGCCR	3 cut(s)	162, 516, 726
AcsI	RAATTY	2 cut(s)	416, 509
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	5 cut(s)	202, 240, 355, 361, 724
AgsI	TTSAA	3 cut(s)	48, 640, 661
AjnI	CCWGG	5 cut(s)	201, 239, 354, 518, 717
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	6 cut(s)	85, 211, 260, 445, 565, 688
AluI	AGCT	6 cut(s)	85, 211, 260, 445, 565, 688
Alw26I	GTCTC	2 cut(s)	268, 381
AoxI	GGCC	7 cut(s)	99, 108, 142, 162, 364, 516, 726
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	2 cut(s)	416, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	408, 440
AspLEI	GCGC	2 cut(s)	28, 329
AspS9I	GGNCC	4 cut(s)	19, 340, 364, 628
AsuHPI	GGTGA	2 cut(s)	602, 778
AvaII	GGWCC	3 cut(s)	19, 340, 628
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	3 cut(s)	149, 326, 404
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	566
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	4 cut(s)	306, 326, 388, 748
BceAI	ACGGC	7 cut(s)	13, 95, 158, 177, 340, 481, 531
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	5 cut(s)	203, 241, 356, 520, 719
BcoDI	GTCTC	2 cut(s)	268, 381
BfoI	RGCGCY	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	5 cut(s)	99, 412, 524, 666, 686
BlsI	GCNGC	5 cut(s)	100, 413, 525, 667, 687
Bme1390I	CCNGG	5 cut(s)	203, 241, 356, 520, 719
Bme18I	GGWCC	3 cut(s)	19, 340, 628
BmgT120I	GGNCC	4 cut(s)	19, 340, 364, 628
BmiI	GGNNCC	7 cut(s)	21, 151, 157, 328, 342, 406, 527
BmrFI	CCNGG	5 cut(s)	203, 241, 356, 520, 719
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	3 cut(s)	223, 512, 714
Bpu10I	CCTNAGC	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	145, 159, 202, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 240, 355, 361, 724
Bse118I	RCCGGY	2 cut(s)	152, 481
BseBI	CCWGG	5 cut(s)	203, 241, 356, 520, 719
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	145, 159, 202, 367
BseGI	GGATG	2 cut(s)	298, 717
BseLI	CCNNNNNNNGG	5 cut(s)	202, 240, 355, 361, 724
BseMII	CTCAG	2 cut(s)	374, 557
BseRI	GAGGAG	2 cut(s)	27, 185
BseXI	GCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	7 cut(s)	101, 110, 144, 164, 366, 518, 728
BshNI	GGYRCC	3 cut(s)	149, 326, 404
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	129, 153, 482
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	5 cut(s)	202, 240, 355, 361, 724
BsmAI	GTCTC	2 cut(s)	268, 381
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	7 cut(s)	101, 110, 144, 164, 366, 518, 728
Bso31I	GGTCTC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	190, 310
BspACI	CCGC	5 cut(s)	98, 199, 412, 523, 665
BspANI	GGCC	7 cut(s)	101, 110, 144, 164, 366, 518, 728
BspCNI	CTCAG	2 cut(s)	375, 558
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	7 cut(s)	21, 151, 157, 328, 342, 406, 527
BspT107I	GGYRCC	3 cut(s)	149, 326, 404
BspTNI	GGTCTC	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	152, 481
BssAI	RCCGGY	2 cut(s)	152, 481
BssECI	CCNNGG	4 cut(s)	145, 159, 202, 367
BssMI	GATC	2 cut(s)	190, 310
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	5 cut(s)	203, 241, 356, 520, 719
Bst4CI	ACNGT	2 cut(s)	736, 766
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	5 cut(s)	171, 258, 409, 474, 690
BstDEI	CTNAG	2 cut(s)	383, 566
BstDSI	CCRYGG	1 cut(s)	159
BstENI	CCTNNNNNAGG	2 cut(s)	200, 359
BstF5I	GGATG	2 cut(s)	298, 717
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	28, 329
BstKTI	GATC	2 cut(s)	193, 313
BstMAI	GTCTC	2 cut(s)	268, 381
BstMBI	GATC	2 cut(s)	190, 310
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 674
BstNI	CCWGG	5 cut(s)	203, 241, 356, 520, 719
BstSCI	CCNGG	5 cut(s)	201, 239, 354, 518, 717
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	7 cut(s)	101, 110, 144, 164, 366, 518, 728
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	298, 717
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	5 cut(s)	171, 258, 409, 474, 690
CfoI	GCGC	2 cut(s)	28, 329
Cfr10I	RCCGGY	2 cut(s)	152, 481
Cfr13I	GGNCC	4 cut(s)	19, 340, 364, 628
ClaI	ATCGAT	1 cut(s)	309
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	3 cut(s)	133, 707, 724
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	383, 566
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	2 cut(s)	192, 312
DpnII	GATC	2 cut(s)	190, 310
EaeI	YGGCCR	3 cut(s)	162, 516, 726
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	19, 340, 628
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	2 cut(s)	200, 359
EcoRII	CCWGG	5 cut(s)	201, 239, 354, 518, 717
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
FaeI	CATG	3 cut(s)	136, 710, 727
FaiI	YATR	5 cut(s)	134, 479, 600, 708, 725
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	3 cut(s)	132, 706, 723
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	99, 412, 524, 666, 686
FokI	GGATG	2 cut(s)	285, 724
Fsp4HI	GCNGC	5 cut(s)	99, 412, 524, 666, 686
GlaI	GCGC	2 cut(s)	27, 328
GluI	GCNGC	5 cut(s)	99, 412, 524, 666, 686
GsuI	CTGGAG	3 cut(s)	223, 512, 714
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	7 cut(s)	101, 110, 144, 164, 366, 518, 728
HapII	CCGG	3 cut(s)	129, 153, 482
HhaI	GCGC	2 cut(s)	28, 329
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	136, 710, 727
Hin6I	GCGC	2 cut(s)	26, 327
HinP1I	GCGC	2 cut(s)	26, 327
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	7 cut(s)	67, 125, 183, 273, 293, 437, 545
HpaII	CCGG	3 cut(s)	129, 153, 482
HphI	GGTGA	2 cut(s)	602, 778
Hpy166II	GTNNAC	3 cut(s)	178, 340, 628
Hpy188I	TCNGA	2 cut(s)	227, 272
Hpy188III	TCNNGA	1 cut(s)	529
Hpy8I	GTNNAC	3 cut(s)	178, 340, 628
Hpy99I	CGWCG	6 cut(s)	116, 125, 179, 272, 326, 335
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	2 cut(s)	736, 766
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	11, 685, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 674
HpyF3I	CTNAG	2 cut(s)	383, 566
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	136, 710, 727
HspAI	GCGC	2 cut(s)	26, 327
KasI	GGCGCC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	190, 310
LmnI	GCTCC	4 cut(s)	161, 216, 531, 703
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	664
MabI	ACCWGGT	1 cut(s)	354
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	64, 601
MalI	GATC	2 cut(s)	192, 312
MboI	GATC	2 cut(s)	190, 310
MboII	GAAGA	6 cut(s)	36, 47, 100, 256, 403, 567
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	2 cut(s)	416, 509
MluNI	TGGCCA	1 cut(s)	728
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	4 cut(s)	61, 134, 287, 446
MmeI	TCCRAC	2 cut(s)	205, 250
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MslI	CAYNNNNRTG	2 cut(s)	459, 734
Msp20I	TGGCCA	1 cut(s)	728
MspI	CCGG	3 cut(s)	129, 153, 482
MspR9I	CCNGG	5 cut(s)	203, 241, 356, 520, 719
MvaI	CCWGG	5 cut(s)	203, 241, 356, 520, 719
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 674
NarI	GGCGCC	1 cut(s)	327
NdeII	GATC	2 cut(s)	190, 310
NlaIII	CATG	3 cut(s)	136, 710, 727
NlaIV	GGNNCC	7 cut(s)	21, 151, 157, 328, 342, 406, 527
NmeAIII	GCCGAG	3 cut(s)	120, 126, 392
NmuCI	GTSAC	2 cut(s)	64, 601
OliI	CACNNNNGTG	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 288, 327, 330
PfeI	GAWTC	3 cut(s)	183, 273, 545
PfoI	TCCNGGA	2 cut(s)	239, 717
PkrI	GCNGC	5 cut(s)	100, 413, 525, 667, 687
PleI	GAGTC	4 cut(s)	61, 133, 287, 445
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	4 cut(s)	61, 133, 287, 445
Psp6I	CCWGG	5 cut(s)	201, 239, 354, 518, 717
PspGI	CCWGG	5 cut(s)	201, 239, 354, 518, 717
PspN4I	GGNNCC	7 cut(s)	21, 151, 157, 328, 342, 406, 527
PspPI	GGNCC	4 cut(s)	19, 340, 364, 628
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	459, 734
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	5 cut(s)	99, 412, 524, 666, 686
Sau3AI	GATC	2 cut(s)	190, 310
Sau96I	GGNCC	4 cut(s)	19, 340, 364, 628
SchI	GAGTC	4 cut(s)	61, 134, 287, 446
ScrFI	CCNGG	5 cut(s)	203, 241, 356, 520, 719
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	664
SfiI	GGCCNNNNNGGCC	1 cut(s)	107
SfoI	GGCGCC	1 cut(s)	328
SinI	GGWCC	3 cut(s)	19, 340, 628
SmiMI	CAYNNNNRTG	2 cut(s)	459, 734
Sse9I	AATT	2 cut(s)	416, 509
SsiI	CCGC	5 cut(s)	98, 199, 412, 523, 665
SspDI	GGCGCC	1 cut(s)	326
StyD4I	CCNGG	5 cut(s)	201, 239, 354, 518, 717
TaaI	ACNGT	2 cut(s)	736, 766
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	7 cut(s)	114, 123, 177, 291, 309, 321, 432
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	416, 509
TauI	GCSGC	4 cut(s)	101, 414, 526, 668
TfiI	GAWTC	3 cut(s)	183, 273, 545
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	2 cut(s)	64, 601
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	2 cut(s)	64, 601
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	739
VpaK11BI	GGWCC	3 cut(s)	19, 340, 628
XagI	CCTNNNNNAGG	2 cut(s)	200, 359
XapI	RAATTY	2 cut(s)	416, 509
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.