RLG00000018001

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005658
Physical Location & Seq
Reverse (-)
24289201 .. 24289935
735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018001

Sequence Viewer

Length: 582 bp
ATGGAAGCCGGATTCTTCAGCTCTTCAATCCTCACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGCCGTCGAGCACGTCGAGTCCGGCATGATCCTCGGCCTCGGCTCCGGCTCCACCGTCAAGCACGCCGTCGACCGCATCGGCGAGCTTTTACAACTCGTCAAGGGCCGCTGCGGGTCCCTCCTCAGAGAGAAAATGGTGGAGGGCGCGTGTAAGAAGTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTTGACCACCTCGGCGGCTCCGGCCTGGCCATGCCGGTGGAGGTGGTGCCGTTCTGCTGGAAATTCACGGCCAAAATGCTGCAGGACTTGTTCCGAAACTCCGGCTGCGTTGCGAAGCTCAAGTGTGACGAGAGTGGGGAGCCTTTTGTGACGGATAATGGGAATTACATTGTGGATATGTATTTCAAGAAGGATATTGGGGATCTGAGAGCTGCAAGTGAGGCCATTTTGCGGCTCGCCGGAGTTGTGGAGCATGGGATGTTTCTGGATATGGCGACTACTGTGATTGTGGCGAGGGAGCTTGGGATCACGGTGAAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

194

Amino Acids

20.99

Weight (kDa)

6.43

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 46 - 185 7.8e-42 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 138, 240
AccII CGCG 1 cut(s) 215
AciI CCGC 6 cut(s) 60, 142, 175, 180, 270, 487
AclWI GGATC 3 cut(s) 91, 465, 569
AcoI YGGCCR 2 cut(s) 282, 324
AcsI RAATTY 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 3 cut(s) 27, 49, 442
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 6 cut(s) 21, 154, 253, 373, 467, 556
AluI AGCT 6 cut(s) 21, 154, 253, 373, 467, 556
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 3 cut(s) 91, 465, 569
AoxI GGCC 7 cut(s) 69, 103, 172, 277, 282, 324, 477
ApeKI GCWGC 4 cut(s) 177, 334, 360, 467
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 172, 183
AsuHPI GGTGA 2 cut(s) 25, 580
AvaII GGWCC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 164, 321, 347, 454
BceAI ACGGC 4 cut(s) 56, 119, 289, 339
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 8 cut(s) 60, 175, 178, 271, 335, 361, 468, 488
BlsI GCNGC 8 cut(s) 61, 176, 179, 272, 336, 362, 469, 489
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 172, 183
BmiI GGNNCC 7 cut(s) 112, 118, 184, 185, 274, 303, 396
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 100, 106, 265
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse118I RCCGGY 1 cut(s) 289
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 100, 106, 265
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 205, 452
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 164, 321, 347, 454
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 7 cut(s) 71, 105, 174, 279, 284, 326, 479
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 7 cut(s) 9, 90, 114, 276, 290, 357, 495
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 7 cut(s) 71, 105, 174, 279, 284, 326, 479
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 96, 457, 561
BspACI CCGC 6 cut(s) 60, 142, 175, 180, 270, 487
BspANI GGCC 7 cut(s) 71, 105, 174, 279, 284, 326, 479
BspCNI CTCAG 2 cut(s) 204, 453
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 7 cut(s) 112, 118, 184, 185, 274, 303, 396
BspMAI CTGCAG 1 cut(s) 339
BspPI GGATC 3 cut(s) 91, 465, 569
BspQI GCTCTTC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 3 cut(s) 100, 106, 265
BssMI GATC 3 cut(s) 96, 457, 561
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 124, 538, 568
Bst6I CTCTTC 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 132, 152, 492
BstDEI CTNAG 2 cut(s) 191, 461
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 99, 460, 564
BstMBI GATC 3 cut(s) 96, 457, 561
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 68, 276, 476
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 335
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 4 cut(s) 164, 321, 347, 454
BstX2I RGATCY 1 cut(s) 457
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 7 cut(s) 71, 105, 174, 279, 284, 326, 479
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 132, 152, 492
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 172, 183
CviAII CATG 3 cut(s) 94, 286, 509
DdeI CTNAG 2 cut(s) 191, 461
DpnI GATC 3 cut(s) 98, 459, 563
DpnII GATC 3 cut(s) 96, 457, 561
EaeI YGGCCR 2 cut(s) 282, 324
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 97, 289, 512
FaiI YATR 5 cut(s) 95, 287, 434, 510, 527
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 93, 285, 508
FauI CCCGC 1 cut(s) 173
FblI GTMKAC 2 cut(s) 138, 240
Fnu4HI GCNGC 8 cut(s) 60, 175, 178, 271, 335, 361, 468, 488
FokI GGATG 1 cut(s) 526
Fsp4HI GCNGC 8 cut(s) 60, 175, 178, 271, 335, 361, 468, 488
GlaI GCGC 1 cut(s) 214
GluI GCNGC 8 cut(s) 60, 175, 178, 271, 335, 361, 468, 488
HaeIII GGCC 7 cut(s) 71, 105, 174, 279, 284, 326, 479
HapII CCGG 7 cut(s) 9, 90, 114, 276, 290, 357, 495
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 97, 289, 512
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 3 cut(s) 139, 241, 259
HindII GTYRAC 3 cut(s) 139, 241, 259
HinfI GANTC 3 cut(s) 12, 86, 245
HpaII CCGG 7 cut(s) 9, 90, 114, 276, 290, 357, 495
HphI GGTGA 2 cut(s) 25, 580
Hpy166II GTNNAC 3 cut(s) 139, 241, 259
Hpy188I TCNGA 3 cut(s) 194, 350, 462
Hpy188III TCNNGA 2 cut(s) 442, 521
Hpy8I GTNNAC 3 cut(s) 139, 241, 259
Hpy99I CGWCG 6 cut(s) 77, 86, 140, 233, 242, 245
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 3 cut(s) 124, 538, 568
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 337, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 276, 476
HpyF3I CTNAG 2 cut(s) 191, 461
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 3 cut(s) 97, 289, 512
HspAI GCGC 1 cut(s) 213
KflI GGGWCCC 1 cut(s) 183
Kzo9I GATC 3 cut(s) 96, 457, 561
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 6 cut(s) 116, 122, 278, 394, 505, 553
Lsp1109I GCAGC 4 cut(s) 164, 321, 347, 454
LweI GCATC 1 cut(s) 153
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 380, 403
MalI GATC 3 cut(s) 98, 459, 563
MboI GATC 3 cut(s) 96, 457, 561
MboII GAAGA 3 cut(s) 7, 15, 61
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 2 cut(s) 317, 418
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 2 cut(s) 95, 254
Mox20I TGGCCA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 7 cut(s) 9, 90, 114, 276, 290, 357, 495
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 68, 276, 476
NdeII GATC 3 cut(s) 96, 457, 561
NlaIII CATG 3 cut(s) 97, 289, 512
NlaIV GGNNCC 7 cut(s) 112, 118, 184, 185, 274, 303, 396
NmeAIII GCCGAG 3 cut(s) 81, 87, 246
NmuCI GTSAC 2 cut(s) 380, 403
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 234, 237
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 8 cut(s) 61, 176, 179, 272, 336, 362, 469, 489
PleI GAGTC 2 cut(s) 94, 253
PpsI GAGTC 2 cut(s) 94, 253
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 7 cut(s) 112, 118, 184, 185, 274, 303, 396
PspPI GGNCC 2 cut(s) 172, 183
PspPPI RGGWCCY 1 cut(s) 183
PstI CTGCAG 1 cut(s) 339
PsuI RGATCY 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 290
SalI GTCGAC 2 cut(s) 137, 239
SapI GCTCTTC 1 cut(s) 28
SatI GCNGC 8 cut(s) 60, 175, 178, 271, 335, 361, 468, 488
Sau3AI GATC 3 cut(s) 96, 457, 561
Sau96I GGNCC 2 cut(s) 172, 183
SchI GAGTC 2 cut(s) 95, 254
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 23, 84, 156, 255, 267, 300, 375, 469, 558
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 335
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 317, 418
SsiI CCGC 6 cut(s) 60, 142, 175, 180, 270, 487
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 124, 538, 568
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 75, 84, 138, 240
TasI AATT 2 cut(s) 317, 418
TauI GCSGC 4 cut(s) 62, 177, 273, 490
TfiI GAWTC 1 cut(s) 12
TseFI GTSAC 2 cut(s) 380, 403
TseI GCWGC 4 cut(s) 177, 334, 360, 467
Tsp45I GTSAC 2 cut(s) 380, 403
TspGWI ACGGA 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 317
XmiI GTMKAC 2 cut(s) 138, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.