Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Forward (+)

50362652 .. 50367744

Gene Structure 5093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGATATTACGGAGGTGGAAGAAAACTTGTTTGCTGCAAGTGATGCCAAGTTGCATGGAGAAATGTGCAAGACGCTCTCTGCAATTTATTGCAAAGTAATGTCAATATTTCCTTCCTTGGAAGCGGCTCGGCCTAGGAGCAAATCTGGCATCCAAGCTTTATGTTCATTGCATGTAGGGCTTGAAAAGGCGAAGAATGTGCTTCAACACTGCTCAGAATGTAGTAAACTTTACCTGGCTATAACTGGGGATTCTGTGCTCTCAAAATTTGAGAAGGCAAGAAGTGCTCTCATGGATAGTCTCAGGCGTGTTGAAGATATTGTTCCACAATCTATTGGTTGTCAGATTCAAGAGGTTCTTAGTGAACTTGAGTGTACTGTCTTCTCACTTGATCCCTCAGAGAAGCAAGTTGGTGATGACATAATTGCTCTGCTCCAGCAAGGGAGAAAATTTGACAACTGCAGTGACATTAACGAGCTAGAATCTTTTCATCAGGCTGCTATCAAGCTTGGTATTACGTCTTCTATGGCAGCTCTTAGAGAGAGAAGAGCTCTAAAAAAACTCATCCAAAGAGCCCGTGCTGAGGAAGATAAGCGGAAGGAGTCAATCGTGGCTTATCTATTGCATCTTATGAGAAAGTACTCCAAGTTGTTTAGAAGTGATTTCTCAGATGATAATGATTCACAGGGTTCTGCACCTTGTTCTCCCACTATTCAATGTTCTAATGAGGATACTGGGTCTGGGGGTAATGGTCAAGCATTTGACCGACAATTGTCAAAAGTTAGTTCTTTTAATTTCAAGACCTCTTTTAGTTACAAGTCGAACACTAGAAAATCAGGTCAGATGGCTCTTCCACCTGAAGAATTGAGGTGTCCAATATCATTGCAGCTTATGTATGACCCGGTCATCATTGCTTCTGGTCAAACCTATGAAAGGATTTGCATTGAAAAATGGTTCAGCGATGGGCATAGTACTTGCCCAAAGACTAAACAAAAGCTGAGTCATCTTTCTCTTACTCCCAATTTCTGTGTCAAGGGTCTCATTTCTAGTTGGTGCGAACAGAATGGAATTTCCATTCCTGATGGCCCCCCAGAGTCGCTTGACCTTAACTATTGGAGGCTGGCATTTTCTGAATCTGAGTCCAGTAATTCAAAATCTATGGGTAGTGTTGGCTCTTGCAAGTTGAAGGGTGCCAAAGTGGTTCCTATAGAGGAGCGTGGTACAATAGAGGAGGCTGTTGGAAATGAAACAGAAGAGTTGTCTCCGGCATCAGAAGAGTCCGAGCCTGATGCTTTTGAGAGTTATCAGGATCTTTTAACTGTCTTGAATGAAGGGGAGGATTTCAGGATAAAGTGCAAGGTGGTGGAGCAAATAAGGCTCCTGCTGAAGGATGATGAGGAGGCCAGGATGTACATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACACTTTCTTAACTCAGCTTTGCGTGAAGCAAATGTTTTGGCTCAAGAAAGTGGAGCTATGGCTCTATTCAATCTTGCTGTGAATAATAACAGAAATAAGGAGACAATGCTTGCGTCAGGGGTAATTTTGTTGCTGGAGGAAATGATCTCCTATCCCAGTTCTCATGGACCTGCGACAGCCCTTTATCTGAATCTCTCCTGCCTTGAAGAAGCCAAGCCTCTAATTGGCACAAGCCCTGCTGTCCCTTTCTTAACCGAACTCCTTCAAGCTAATGCTGAAACCCAATGCAAGCTTGATGCCCTCCATGCCCTATACAACCTTTCTAGCATTCCCTCAAACATTCCAAATCTTCTTTCAGCCAGTATCATCAGTGGTTTGCAATCCCTTCTTGCAGACTCTGGTGAACATTCATGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTTCAAGTAATTCTGCGAAAGATGAAATGATTTCAAATACGAAGCTTATCAGTGCACTAGCAGCACTTCTGGAGGCTGAGCAACCCATTGAGCAGGAGCAAGCTGTCTCATGTCTCTTTATGTTGTGTAATGGGAATGAGAAATGCAGTCAGATGGTCCTGCAGGAAGGGGTAATTCCTGCATTGGTGTCGATGTCCGTTAATGGAACATCAAGAGGAAAAGAGAAAGCTCAGAAGCTGTTAATGCTGTTTCGTGAGCAGAGACAAAGAGACCAATCACCTCCGGAGGAGAAGGTGCAACTCTGTGAACAAAATGACAACAATCCCACACCCGCTCCAGAATCAAAGCCGCTATGCAAATCCATCTCAAGAAGAAAGATGGGCAAAGCTTTTAGCTTCTTATGGAAGAGCAAAAGCTATTCTGTTTACCAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

776

Amino Acids

85.55

Weight (kDa)

5.35

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	286 - 355	5.9e-19	U-box domain
ARM_ARMC5	PF24768	557 - 706	1.3e-11	ARMC5
ARM_PUB	PF25598	568 - 720	2.4e-10	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1624
AccB1I	GGYRCC	1 cut(s)	1190
AccBSI	CCGCTC	1 cut(s)	2228
AccIII	TCCGGA	1 cut(s)	2176
AciI	CCGC	4 cut(s)	125, 595, 2226, 2243
AclWI	GGATC	2 cut(s)	386, 1317
AcsI	RAATTY	4 cut(s)	266, 449, 1068, 1888
AcuI	CTGAAG	2 cut(s)	879, 1406
AfaI	GTAC	5 cut(s)	376, 641, 973, 1222, 1412
AfiI	CCNNNNNNNGG	4 cut(s)	583, 933, 1387, 1670
AjnI	CCWGG	2 cut(s)	234, 1403
AjuI	GAANNNNNNNTTGG	2 cut(s)	1783, 1815
Alw21I	GWGCWC	4 cut(s)	261, 289, 553, 1951
Alw26I	GTCTC	8 cut(s)	305, 1043, 1266, 1541, 2005, 2012, 2149, 2157
Alw44I	GTGCAC	1 cut(s)	1947
AlwI	GGATC	2 cut(s)	386, 1317
AlwNI	CAGNNNCTG	2 cut(s)	1844, 2131
Aor13HI	TCCGGA	1 cut(s)	2176
AoxI	GGCC	3 cut(s)	131, 1084, 1401
ApaLI	GTGCAC	1 cut(s)	1947
ApeKI	GCWGC	5 cut(s)	35, 497, 530, 886, 1955
ApoI	RAATTY	4 cut(s)	266, 449, 1068, 1888
ArsI	GACNNNNNNTTYG	2 cut(s)	985, 1017
Asp700I	GAANNNNTTC	3 cut(s)	486, 1440, 1707
AspA2I	CCTAGG	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	1085, 1613, 2050
AsuC2I	CCSGG	1 cut(s)	902
AsuHPI	GGTGA	3 cut(s)	425, 1859, 2163
AvaII	GGWCC	2 cut(s)	1613, 2050
AvrII	CCTAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	1951
BanI	GGYRCC	1 cut(s)	1190
BanII	GRGCYC	2 cut(s)	553, 577
BarI	GAAGNNNNNNTAC	4 cut(s)	505, 537, 1428, 1460
BbsI	GAAGAC	2 cut(s)	373, 513
Bbv12I	GWGCWC	4 cut(s)	261, 289, 553, 1951
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	5 cut(s)	22, 484, 542, 898, 1967
BccI	CCATC	6 cut(s)	838, 956, 1076, 2041, 2264, 2266
BcgI	CGANNNNNNTGC	6 cut(s)	181, 215, 1271, 1305, 2064, 2098
BciT130I	CCWGG	2 cut(s)	236, 1405
BciVI	GTATCC	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	8 cut(s)	305, 1043, 1266, 1541, 2005, 2012, 2149, 2157
BfaI	CTAG	6 cut(s)	135, 479, 828, 1047, 1770, 1952
BfmI	CTRYAG	3 cut(s)	460, 1206, 2054
BfuAI	ACCTGC	1 cut(s)	1624
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	7 cut(s)	36, 126, 498, 531, 887, 1956, 2243
BlnI	CCTAGG	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	1971
BlsI	GCNGC	7 cut(s)	37, 127, 499, 532, 888, 1957, 2244
BmcAI	AGTACT	2 cut(s)	641, 973
Bme1390I	CCNGG	3 cut(s)	236, 902, 1405
Bme18I	GGWCC	2 cut(s)	1613, 2050
BmgT120I	GGNCC	3 cut(s)	1085, 1613, 2050
BmiI	GGNNCC	4 cut(s)	1087, 1192, 1203, 1379
BmrFI	CCNGG	3 cut(s)	236, 902, 1405
BmrI	ACTGGG	3 cut(s)	255, 744, 1596
BmsI	GCATC	6 cut(s)	34, 159, 634, 1277, 1279, 1732
BmuI	ACTGGG	3 cut(s)	255, 744, 1596
BoxI	GACNNNNGTC	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	373, 513
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BpmI	CTGGAG	4 cut(s)	419, 1601, 1985, 2214
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	1971
BpuEI	CTTGAG	3 cut(s)	389, 1473, 2245
BpuMI	CCSGG	1 cut(s)	902
BsaI	GGTCTC	2 cut(s)	1043, 2157
BsaJI	CCNNGG	2 cut(s)	117, 134
BsaWI	WCCGGW	1 cut(s)	2176
BsaXI	ACNNNNNCTCC	2 cut(s)	2212, 2242
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 933, 1387, 1670
Bse1I	ACTGG	6 cut(s)	250, 739, 1143, 1602, 1806, 2323
Bse3DI	GCAATG	3 cut(s)	167, 881, 909
BseAI	TCCGGA	1 cut(s)	2176
BseBI	CCWGG	2 cut(s)	236, 1405
BseDI	CCNNGG	2 cut(s)	117, 134
BseGI	GGATG	4 cut(s)	150, 564, 1396, 1413
BseLI	CCNNNNNNNGG	4 cut(s)	583, 933, 1387, 1670
BseMI	GCAATG	3 cut(s)	167, 881, 909
BseNI	ACTGG	6 cut(s)	250, 739, 1143, 1602, 1806, 2323
BseRI	GAGGAG	4 cut(s)	1226, 1244, 1412, 2195
BseSI	GKGCMC	1 cut(s)	1951
BseXI	GCAGC	5 cut(s)	22, 484, 542, 898, 1967
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	3 cut(s)	133, 1086, 1403
BshNI	GGYRCC	1 cut(s)	1190
BsiHKAI	GWGCWC	4 cut(s)	261, 289, 553, 1951
BsiSI	CCGG	3 cut(s)	902, 1265, 2177
BslFI	GGGAC	1 cut(s)	1673
BslI	CCNNNNNNNGG	4 cut(s)	583, 933, 1387, 1670
BsmAI	GTCTC	8 cut(s)	305, 1043, 1266, 1541, 2005, 2012, 2149, 2157
BsmFI	GGGAC	1 cut(s)	1673
BsmI	GAATGC	1 cut(s)	1773
BsnI	GGCC	3 cut(s)	133, 1086, 1403
Bso31I	GGTCTC	2 cut(s)	1043, 2157
Bsp1286I	GDGCHC	5 cut(s)	261, 289, 553, 577, 1951
Bsp13I	TCCGGA	1 cut(s)	2176
Bsp1407I	TGTACA	1 cut(s)	1410
Bsp143I	GATC	3 cut(s)	391, 1309, 1590
Bsp1720I	GCTNAGC	1 cut(s)	1971
BspACI	CCGC	4 cut(s)	125, 595, 2226, 2243
BspANI	GGCC	3 cut(s)	133, 1086, 1403
BspEI	TCCGGA	1 cut(s)	2176
BspLI	GGNNCC	4 cut(s)	1087, 1192, 1203, 1379
BspMAI	CTGCAG	2 cut(s)	464, 2058
BspMI	ACCTGC	1 cut(s)	1624
BspPI	GGATC	2 cut(s)	386, 1317
BspQI	GCTCTTC	3 cut(s)	541, 855, 2294
BspT107I	GGYRCC	1 cut(s)	1190
BspTNI	GGTCTC	2 cut(s)	1043, 2157
BsrBI	CCGCTC	1 cut(s)	2228
BsrDI	GCAATG	3 cut(s)	167, 881, 909
BsrGI	TGTACA	1 cut(s)	1410
BsrI	ACTGG	6 cut(s)	250, 739, 1143, 1602, 1806, 2323
BssECI	CCNNGG	2 cut(s)	117, 134
BssMI	GATC	3 cut(s)	391, 1309, 1590
BssT1I	CCWWGG	2 cut(s)	117, 134
Bst2UI	CCWGG	2 cut(s)	236, 1405
Bst4CI	ACNGT	2 cut(s)	379, 1321
Bst6I	CTCTTC	5 cut(s)	541, 855, 1248, 1269, 2294
BstAPI	GCANNNNNTGC	2 cut(s)	44, 284
BstAUI	TGTACA	1 cut(s)	1410
BstC8I	GCNNGC	4 cut(s)	1122, 1557, 1736, 1995
BstENI	CCTNNNNNAGG	2 cut(s)	931, 1385
BstF5I	GGATG	4 cut(s)	150, 564, 1396, 1413
BstKTI	GATC	3 cut(s)	394, 1312, 1593
BstMAI	GTCTC	8 cut(s)	305, 1043, 1266, 1541, 2005, 2012, 2149, 2157
BstMBI	GATC	3 cut(s)	391, 1309, 1590
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 147, 178, 284, 1375, 1751, 1955, 2137
BstNI	CCWGG	2 cut(s)	236, 1405
BstNSI	RCATGY	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	772
BstSCI	CCNGG	3 cut(s)	234, 900, 1403
BstSFI	CTRYAG	3 cut(s)	460, 1206, 2054
BstSLI	GKGCMC	1 cut(s)	1951
BstV1I	GCAGC	5 cut(s)	22, 484, 542, 898, 1967
BstV2I	GAAGAC	2 cut(s)	373, 513
BstX2I	RGATCY	1 cut(s)	1309
BstYI	RGATCY	1 cut(s)	1309
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	133, 1086, 1403
BtgZI	GCGATG	1 cut(s)	975
BtsCI	GGATG	4 cut(s)	150, 564, 1396, 1413
BtsI	GCAGTG	2 cut(s)	208, 469
BtsIMutI	CAGTG	5 cut(s)	208, 469, 1822, 1951, 2330
BveI	ACCTGC	1 cut(s)	1624
Cac8I	GCNNGC	4 cut(s)	1122, 1557, 1736, 1995
CaiI	CAGNNNCTG	2 cut(s)	1844, 2131
Cfr13I	GGNCC	3 cut(s)	1085, 1613, 2050
CseI	GACGC	2 cut(s)	82, 1548
Csp6I	GTAC	5 cut(s)	375, 640, 972, 1221, 1411
CviAII	CATG	8 cut(s)	56, 173, 292, 1414, 1610, 1751, 1857, 2004
CviQI	GTAC	5 cut(s)	375, 640, 972, 1221, 1411
DpnI	GATC	3 cut(s)	393, 1311, 1592
DpnII	GATC	3 cut(s)	391, 1309, 1590
Eam1104I	CTCTTC	5 cut(s)	541, 855, 1248, 1269, 2294
EarI	CTCTTC	5 cut(s)	541, 855, 1248, 1269, 2294
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	117, 134
Eco24I	GRGCYC	2 cut(s)	553, 577
Eco31I	GGTCTC	2 cut(s)	1043, 2157
Eco47I	GGWCC	2 cut(s)	1613, 2050
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	879, 1406
EcoICRI	GAGCTC	1 cut(s)	551
EcoNI	CCTNNNNNAGG	2 cut(s)	931, 1385
EcoRII	CCWGG	2 cut(s)	234, 1403
EcoT14I	CCWWGG	2 cut(s)	117, 134
EcoT38I	GRGCYC	2 cut(s)	553, 577
ErhI	CCWWGG	2 cut(s)	117, 134
FaeI	CATG	8 cut(s)	59, 176, 295, 1417, 1613, 1754, 1860, 2007
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	1673
FatI	CATG	8 cut(s)	55, 172, 291, 1413, 1609, 1750, 1856, 2003
FauI	CCCGC	1 cut(s)	2233
Fnu4HI	GCNGC	7 cut(s)	36, 126, 498, 531, 887, 1956, 2243
FokI	GGATG	4 cut(s)	137, 551, 1403, 1420
FriOI	GRGCYC	2 cut(s)	553, 577
Fsp4HI	GCNGC	7 cut(s)	36, 126, 498, 531, 887, 1956, 2243
FspBI	CTAG	6 cut(s)	135, 479, 828, 1047, 1770, 1952
GluI	GCNGC	7 cut(s)	36, 126, 498, 531, 887, 1956, 2243
GsuI	CTGGAG	4 cut(s)	419, 1601, 1985, 2214
HaeIII	GGCC	3 cut(s)	133, 1086, 1403
HapII	CCGG	3 cut(s)	902, 1265, 2177
HgaI	GACGC	2 cut(s)	82, 1548
Hin1II	CATG	8 cut(s)	59, 176, 295, 1417, 1613, 1754, 1860, 2007
HindIII	AAGCTT	5 cut(s)	156, 506, 1736, 1937, 2280
HpaII	CCGG	3 cut(s)	902, 1265, 2177
HphI	GGTGA	3 cut(s)	425, 1859, 2163
Hpy166II	GTNNAC	7 cut(s)	227, 365, 375, 1850, 1949, 2201, 2320
Hpy8I	GTNNAC	7 cut(s)	227, 365, 375, 1850, 1949, 2201, 2320
HpyCH4III	ACNGT	2 cut(s)	379, 1321
HpyCH4IV	ACGT	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 147, 178, 284, 1375, 1751, 1955, 2137
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	8 cut(s)	59, 176, 295, 1417, 1613, 1754, 1860, 2007
Kpn2I	TCCGGA	1 cut(s)	2176
Kzo9I	GATC	3 cut(s)	391, 1309, 1590
LguI	GCTCTTC	3 cut(s)	541, 855, 2294
LmnI	GCTCC	8 cut(s)	138, 438, 1213, 1366, 1383, 1499, 1990, 2233
Lsp1109I	GCAGC	5 cut(s)	22, 484, 542, 898, 1967
LweI	GCATC	6 cut(s)	34, 159, 634, 1277, 1279, 1732
MaeI	CTAG	6 cut(s)	135, 479, 828, 1047, 1770, 1952
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	464, 812
MalI	GATC	3 cut(s)	393, 1311, 1592
MbiI	CCGCTC	1 cut(s)	2228
MboI	GATC	3 cut(s)	391, 1309, 1590
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	1 cut(s)	1309
MhlI	GDGCHC	5 cut(s)	261, 289, 553, 577, 1951
MlyI	GAGTC	6 cut(s)	611, 1009, 1103, 1148, 1286, 1835
MmeI	TCCRAC	1 cut(s)	1219
MroI	TCCGGA	1 cut(s)	2176
MroXI	GAANNNNTTC	3 cut(s)	486, 1440, 1707
MseI	TTAA	8 cut(s)	471, 792, 1107, 1316, 1455, 1697, 2094, 2135
MspI	CCGG	3 cut(s)	902, 1265, 2177
MspR9I	CCNGG	3 cut(s)	236, 902, 1405
MunI	CAATTG	1 cut(s)	770
Mva1269I	GAATGC	1 cut(s)	1773
MvaI	CCWGG	2 cut(s)	236, 1405
MwoI	GCNNNNNNNGC	8 cut(s)	44, 147, 178, 284, 1375, 1751, 1955, 2137
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	3 cut(s)	391, 1309, 1590
NlaIII	CATG	8 cut(s)	59, 176, 295, 1417, 1613, 1754, 1860, 2007
NlaIV	GGNNCC	4 cut(s)	1087, 1192, 1203, 1379
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	176
PciSI	GCTCTTC	3 cut(s)	541, 855, 2294
PctI	GAATGC	1 cut(s)	1773
PdmI	GAANNNNTTC	3 cut(s)	486, 1440, 1707
PfeI	GAWTC	7 cut(s)	251, 346, 482, 680, 1133, 1636, 2234
PflFI	GACNNNGTC	1 cut(s)	902
PkrI	GCNGC	7 cut(s)	37, 127, 499, 532, 888, 1957, 2244
PleI	GAGTC	6 cut(s)	610, 1008, 1102, 1147, 1285, 1835
PpsI	GAGTC	6 cut(s)	610, 1008, 1102, 1147, 1285, 1835
PshAI	GACNNNNGTC	1 cut(s)	772
Psp124BI	GAGCTC	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	234, 1403
PspGI	CCWGG	2 cut(s)	234, 1403
PspN4I	GGNNCC	4 cut(s)	1087, 1192, 1203, 1379
PspPI	GGNCC	3 cut(s)	1085, 1613, 2050
PstI	CTGCAG	2 cut(s)	464, 2058
PstNI	CAGNNNCTG	2 cut(s)	1844, 2131
PsuI	RGATCY	1 cut(s)	1309
PsyI	GACNNNGTC	1 cut(s)	902
RsaI	GTAC	5 cut(s)	376, 641, 973, 1222, 1412
RsaNI	GTAC	5 cut(s)	375, 640, 972, 1221, 1411
SacI	GAGCTC	1 cut(s)	553
SapI	GCTCTTC	3 cut(s)	541, 855, 2294
SaqAI	TTAA	8 cut(s)	471, 792, 1107, 1316, 1455, 1697, 2094, 2135
SatI	GCNGC	7 cut(s)	36, 126, 498, 531, 887, 1956, 2243
Sau3AI	GATC	3 cut(s)	391, 1309, 1590
Sau96I	GGNCC	3 cut(s)	1085, 1613, 2050
SbfI	CCTGCAGG	1 cut(s)	2058
ScaI	AGTACT	2 cut(s)	641, 973
SchI	GAGTC	6 cut(s)	611, 1009, 1103, 1148, 1286, 1835
ScrFI	CCNGG	3 cut(s)	236, 902, 1405
SdaI	CCTGCAGG	1 cut(s)	2058
SduI	GDGCHC	5 cut(s)	261, 289, 553, 577, 1951
SfaNI	GCATC	6 cut(s)	34, 159, 634, 1277, 1279, 1732
SfcI	CTRYAG	3 cut(s)	460, 1206, 2054
SinI	GGWCC	2 cut(s)	1613, 2050
SmlI	CTYRAG	3 cut(s)	368, 1488, 2260
SmoI	CTYRAG	3 cut(s)	368, 1488, 2260
Sse8387I	CCTGCAGG	1 cut(s)	2058
SsiI	CCGC	4 cut(s)	125, 595, 2226, 2243
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	6 cut(s)	135, 479, 828, 1047, 1770, 1952
SstI	GAGCTC	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	234, 900, 1403
StyI	CCWWGG	2 cut(s)	117, 134
TaaI	ACNGT	2 cut(s)	379, 1321
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	2 cut(s)	821, 2084
TaqII	GACCGA	1 cut(s)	780
TatI	WGTACW	4 cut(s)	374, 639, 971, 1410
TauI	GCSGC	2 cut(s)	128, 2245
TfiI	GAWTC	7 cut(s)	251, 346, 482, 680, 1133, 1636, 2234
Tru1I	TTAA	8 cut(s)	471, 792, 1107, 1316, 1455, 1697, 2094, 2135
Tru9I	TTAA	8 cut(s)	471, 792, 1107, 1316, 1455, 1697, 2094, 2135
TscAI	CASTG	5 cut(s)	215, 469, 1822, 1951, 2330
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	5 cut(s)	35, 497, 530, 886, 1955
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	7 cut(s)	156, 479, 945, 1260, 1344, 1845, 1932
TspGWI	ACGGA	2 cut(s)	26, 2080
TspRI	CASTG	5 cut(s)	215, 469, 1822, 1951, 2330
Tth111I	GACNNNGTC	1 cut(s)	902
VneI	GTGCAC	1 cut(s)	1947
VpaK11BI	GGWCC	2 cut(s)	1613, 2050
XagI	CCTNNNNNAGG	2 cut(s)	931, 1385
XapI	RAATTY	4 cut(s)	266, 449, 1068, 1888
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1411
XmaJI	CCTAGG	1 cut(s)	134
XmnI	GAANNNNTTC	3 cut(s)	486, 1440, 1707
XspI	CTAG	6 cut(s)	135, 479, 828, 1047, 1770, 1952
ZrmI	AGTACT	2 cut(s)	641, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.