Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

59908258 .. 59911320

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGTCTCGGTATCTTGTTGAATTGGTTCGAGATAATTTGGAATCCACTGGGGACGTGATGAGTGCGATAATGCCTTTGATGAAACTCTTGTCCCTCACAATTATTGGACTGGTTCTCGCATACCCAAAAACTCAAATCATACCGAGAGCTACCTTTAAGCTCCTCAGCAAGCTTGTTTTTGCCTTGTTCTTGCCCTGTCTAATCTTTACCGAACTAGGTGAATCCATTACGCTTGAAAACTTTGTTCGGTGGTGGTTTATCCCAGTTAATGTGTTGGTGAGTACACTAGTTGGTTGTTTCCTTGGGTACTTGGTGGTGATTATATGTCATCCGCCGCCAGAGTTGAACAGATTTACTATTATCATGACTGCATTTGGGAATACAGGAAATCTCCCGCTTGCTCTTGTTGGATCTGTTTGTCATACTGAGAAAAATCCATTTGGACCTCATTGTCACTCGAGAGGGGTGGCTTATGTCTCTTTTGCTCAATGGGTTGCTGTAATTCTTGTTTATACCTTTGTCTATCATATGATGGAGCCACCATTGGAGTATTATGAGGTTGTTGAGGAAGGGACTGAGGGGACTGAGGGGACTGAGATTGAGGAATTGAAAGATAACAGAGGTAACGATCTCAGTAGGCCTTTACTTGTGGAAGCTGAATGGCCTGGTATGGAAGAAAAGGAAACTGAGCATTCCAAGACACCCTTTATTGCTAGGGTTTTCAACAGCATCTCAAGTGTTTCGCAGACTGGTATTCCAGATGGTGATCTTTCTGTGGAAAGCGGTGGAAACAGTCCCAGGTCCATTAGGTGTTTGGCTGAACCAAGGGTGGTTAGGAGGATCAGAATTGTTGCCGAACAAACTCCAATACGTCACATACTTCAACCGCCAACGATTGCTTCACTGTTCGCTATCATTATTGGGACAGTGCCTCAGTTGAAAGCTTTTGTCTTCGGATATGATGCTCCACTATCCTTCCTCACAGATAGTTTAGAGATTTTAGCTGGTGCTACGGTGCCTTCTGTGATGCTTATTCTTGGGGGTATGCTTGCAGAGGGACCAAATGATTCTAAACTTGGCCTTCGAACTACCATCGGTATATCAGTGGCAAGGCTCTTAGTGCTTCCTCTGGTGGGGATCTGTATTGTAGGGTTGGCCAATAAGCTTGATTTTCTGGTTGATGACGACACAATGTATAGGTTTGTACTTCTGCTGCAGTACACGACCCCAAGCGCAATTTTATTGGGAGCAATTGCCAGTTTGAGAGGATATGCAGTTAGTGAGGCATCAGCACTCATCTTCTGGCAGCATGTGTTTGCTCTCTTCTCCCTTTCCTTGTATATTGTTATCTACTTCAAACTAATACCACACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

458

Amino Acids

50.54

Weight (kDa)

5.46

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	22 - 448	4.7e-93	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	1015
AciI	CCGC	5 cut(s)	332, 335, 395, 783, 887
AclWI	GGATC	3 cut(s)	418, 848, 1145
AcoI	YGGCCR	1 cut(s)	1155
AfaI	GTAC	4 cut(s)	283, 308, 1206, 1220
AfiI	CCNNNNNNNGG	1 cut(s)	1133
AgsI	TTSAA	8 cut(s)	20, 236, 346, 610, 724, 884, 940, 1357
AhlI	ACTAGT	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	664, 797
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	7 cut(s)	149, 160, 172, 656, 944, 1004, 1165
AluI	AGCT	7 cut(s)	149, 160, 172, 656, 944, 1004, 1165
Alw26I	GTCTC	2 cut(s)	9, 481
AlwI	GGATC	3 cut(s)	418, 848, 1145
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	638, 662, 1078, 1155
ApeKI	GCWGC	2 cut(s)	1213, 1306
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	1235
AspS9I	GGNCC	3 cut(s)	443, 801, 1058
AsuHPI	GGTGA	4 cut(s)	230, 289, 328, 776
AsuII	TTCGAA	1 cut(s)	1084
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	443, 801, 1058
BalI	TGGCCA	1 cut(s)	1157
BanI	GGYRCC	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	943
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	1200, 1318
BccI	CCATC	3 cut(s)	526, 755, 1100
BciT130I	CCWGG	2 cut(s)	666, 799
BcoDI	GTCTC	2 cut(s)	9, 481
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	3 cut(s)	215, 287, 714
BfmI	CTRYAG	1 cut(s)	1214
BisI	GCNGC	3 cut(s)	335, 1214, 1307
BlsI	GCNGC	3 cut(s)	336, 1215, 1308
Bme1390I	CCNGG	2 cut(s)	666, 799
Bme18I	GGWCC	3 cut(s)	443, 801, 1058
BmeT110I	CYCGRG	1 cut(s)	457
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	443, 801, 1058
BmiI	GGNNCC	3 cut(s)	537, 1017, 1059
BmrFI	CCNGG	2 cut(s)	666, 799
BmrI	ACTGGG	2 cut(s)	57, 257
BmsI	GCATC	4 cut(s)	738, 952, 1017, 1295
BmuI	ACTGGG	2 cut(s)	57, 257
BpiI	GAAGAC	1 cut(s)	943
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	1084
BpuEI	CTTGAG	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	3 cut(s)	301, 797, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	1133
Bse1I	ACTGG	5 cut(s)	52, 114, 263, 754, 1257
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	666, 799
BseDI	CCNNGG	3 cut(s)	301, 797, 824
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	1133
BseMII	CTCAG	8 cut(s)	178, 417, 567, 576, 585, 646, 678, 947
BseNI	ACTGG	5 cut(s)	52, 114, 263, 754, 1257
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	1200, 1318
BshFI	GGCC	4 cut(s)	640, 664, 1080, 1157
BshNI	GGYRCC	1 cut(s)	1015
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	8 cut(s)	65, 76, 586, 595, 604, 780, 937, 1071
BslI	CCNNNNNNNGG	1 cut(s)	1133
BsmAI	GTCTC	2 cut(s)	9, 481
BsmFI	GGGAC	8 cut(s)	65, 76, 586, 595, 604, 780, 937, 1071
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	4 cut(s)	640, 664, 1080, 1157
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	1084
Bsp143I	GATC	5 cut(s)	410, 628, 766, 840, 1137
BspACI	CCGC	5 cut(s)	332, 335, 395, 783, 887
BspANI	GGCC	4 cut(s)	640, 664, 1080, 1157
BspCNI	CTCAG	8 cut(s)	177, 418, 568, 577, 586, 645, 679, 946
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	537, 1017, 1059
BspMAI	CTGCAG	1 cut(s)	1218
BspPI	GGATC	3 cut(s)	418, 848, 1145
BspT104I	TTCGAA	1 cut(s)	1084
BspT107I	GGYRCC	1 cut(s)	1015
BsrI	ACTGG	5 cut(s)	52, 114, 263, 754, 1257
BssECI	CCNNGG	3 cut(s)	301, 797, 824
BssMI	GATC	5 cut(s)	410, 628, 766, 840, 1137
BssT1I	CCWWGG	2 cut(s)	301, 824
Bst2UI	CCWGG	2 cut(s)	666, 799
Bst4CI	ACNGT	4 cut(s)	794, 906, 928, 1015
Bst6I	CTCTTC	1 cut(s)	1328
BstBI	TTCGAA	1 cut(s)	1084
BstC8I	GCNNGC	3 cut(s)	170, 399, 1050
BstDEI	CTNAG	9 cut(s)	164, 426, 576, 585, 594, 632, 687, 933, 1117
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	1235
BstKTI	GATC	5 cut(s)	413, 631, 769, 843, 1140
BstMAI	GTCTC	2 cut(s)	9, 481
BstMBI	GATC	5 cut(s)	410, 628, 766, 840, 1137
BstMWI	GCNNNNNNNGC	1 cut(s)	1120
BstNI	CCWGG	2 cut(s)	666, 799
BstNSI	RCATGY	1 cut(s)	1313
BstSCI	CCNGG	2 cut(s)	664, 797
BstSFI	CTRYAG	1 cut(s)	1214
BstV1I	GCAGC	2 cut(s)	1200, 1318
BstV2I	GAAGAC	1 cut(s)	943
BstX2I	RGATCY	2 cut(s)	410, 1137
BstYI	RGATCY	2 cut(s)	410, 1137
BsuRI	GGCC	4 cut(s)	640, 664, 1080, 1157
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	4 cut(s)	45, 902, 933, 1110
Cac8I	GCNNGC	3 cut(s)	170, 399, 1050
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	1235
Cfr13I	GGNCC	3 cut(s)	443, 801, 1058
Csp6I	GTAC	4 cut(s)	282, 307, 1205, 1219
CviAII	CATG	2 cut(s)	364, 1310
CviQI	GTAC	4 cut(s)	282, 307, 1205, 1219
DdeI	CTNAG	9 cut(s)	164, 426, 576, 585, 594, 632, 687, 933, 1117
DpnI	GATC	5 cut(s)	412, 630, 768, 842, 1139
DpnII	GATC	5 cut(s)	410, 628, 766, 840, 1137
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	1155
Eam1104I	CTCTTC	1 cut(s)	1328
EarI	CTCTTC	1 cut(s)	1328
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	301, 824
Eco147I	AGGCCT	1 cut(s)	640
Eco47I	GGWCC	3 cut(s)	443, 801, 1058
Eco88I	CYCGRG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	664, 797
EcoT14I	CCWWGG	2 cut(s)	301, 824
ErhI	CCWWGG	2 cut(s)	301, 824
FaeI	CATG	2 cut(s)	367, 1313
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	8 cut(s)	65, 76, 586, 595, 604, 780, 937, 1071
FatI	CATG	2 cut(s)	363, 1309
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	335, 1214, 1307
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	335, 1214, 1307
FspBI	CTAG	3 cut(s)	215, 287, 714
GlaI	GCGC	1 cut(s)	1234
GluI	GCNGC	3 cut(s)	335, 1214, 1307
HaeIII	GGCC	4 cut(s)	640, 664, 1080, 1157
HhaI	GCGC	1 cut(s)	1235
Hin1II	CATG	2 cut(s)	367, 1313
Hin6I	GCGC	1 cut(s)	1233
HinP1I	GCGC	1 cut(s)	1233
HindIII	AAGCTT	3 cut(s)	170, 942, 1163
HinfI	GANTC	3 cut(s)	41, 221, 1067
HphI	GGTGA	4 cut(s)	230, 289, 328, 776
Hpy166II	GTNNAC	2 cut(s)	284, 1221
Hpy188I	TCNGA	3 cut(s)	845, 956, 1376
Hpy188III	TCNNGA	4 cut(s)	29, 364, 459, 758
Hpy8I	GTNNAC	2 cut(s)	284, 1221
HpyAV	CCTTC	4 cut(s)	563, 985, 1029, 1091
HpyCH4III	ACNGT	4 cut(s)	794, 906, 928, 1015
HpyCH4IV	ACGT	2 cut(s)	54, 871
HpyCH4V	TGCA	4 cut(s)	371, 1052, 1216, 1274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1120
HpyF3I	CTNAG	9 cut(s)	164, 426, 576, 585, 594, 632, 687, 933, 1117
HpySE526I	ACGT	2 cut(s)	54, 871
Hsp92II	CATG	2 cut(s)	367, 1313
HspAI	GCGC	1 cut(s)	1233
Kzo9I	GATC	5 cut(s)	410, 628, 766, 840, 1137
LmnI	GCTCC	4 cut(s)	165, 535, 970, 1247
Lsp1109I	GCAGC	2 cut(s)	1200, 1318
LweI	GCATC	4 cut(s)	738, 952, 1017, 1295
MaeI	CTAG	3 cut(s)	215, 287, 714
MaeII	ACGT	2 cut(s)	54, 871
MaeIII	GTNAC	3 cut(s)	452, 623, 872
MalI	GATC	5 cut(s)	412, 630, 768, 842, 1139
MboI	GATC	5 cut(s)	410, 628, 766, 840, 1137
MboII	GAAGA	4 cut(s)	686, 943, 1291, 1315
MfeI	CAATTG	1 cut(s)	1251
MflI	RGATCY	2 cut(s)	410, 1137
MlsI	TGGCCA	1 cut(s)	1157
MluCI	AATT	8 cut(s)	20, 34, 99, 501, 605, 846, 1236, 1251
MluNI	TGGCCA	1 cut(s)	1157
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	1157
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	2 cut(s)	156, 267
Msp20I	TGGCCA	1 cut(s)	1157
MspR9I	CCNGG	2 cut(s)	666, 799
MunI	CAATTG	1 cut(s)	1251
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	2 cut(s)	666, 799
MwoI	GCNNNNNNNGC	1 cut(s)	1120
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	5 cut(s)	410, 628, 766, 840, 1137
NlaIII	CATG	2 cut(s)	367, 1313
NlaIV	GGNNCC	3 cut(s)	537, 1017, 1059
NmuCI	GTSAC	2 cut(s)	452, 872
NspI	RCATGY	1 cut(s)	1313
NspV	TTCGAA	1 cut(s)	1084
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	640
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	41, 221, 1067
PkrI	GCNGC	3 cut(s)	336, 1215, 1308
Psp6I	CCWGG	2 cut(s)	664, 797
PspGI	CCWGG	2 cut(s)	664, 797
PspN4I	GGNNCC	3 cut(s)	537, 1017, 1059
PspPI	GGNCC	3 cut(s)	443, 801, 1058
PstI	CTGCAG	1 cut(s)	1218
PsuI	RGATCY	2 cut(s)	410, 1137
RsaI	GTAC	4 cut(s)	283, 308, 1206, 1220
RsaNI	GTAC	4 cut(s)	282, 307, 1205, 1219
SaqAI	TTAA	2 cut(s)	156, 267
SatI	GCNGC	3 cut(s)	335, 1214, 1307
Sau3AI	GATC	5 cut(s)	410, 628, 766, 840, 1137
Sau96I	GGNCC	3 cut(s)	443, 801, 1058
ScrFI	CCNGG	2 cut(s)	666, 799
SfaNI	GCATC	4 cut(s)	738, 952, 1017, 1295
SfcI	CTRYAG	1 cut(s)	1214
Sfr274I	CTCGAG	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	1084
SinI	GGWCC	3 cut(s)	443, 801, 1058
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	457, 733
SmoI	CTYRAG	2 cut(s)	457, 733
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	8 cut(s)	20, 34, 99, 501, 605, 846, 1236, 1251
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	5 cut(s)	332, 335, 395, 783, 887
SspMI	CTAG	3 cut(s)	215, 287, 714
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	2 cut(s)	664, 797
StyI	CCWWGG	2 cut(s)	301, 824
TaaI	ACNGT	4 cut(s)	794, 906, 928, 1015
TaiI	ACGT	2 cut(s)	57, 874
TaqI	TCGA	3 cut(s)	28, 458, 1084
TasI	AATT	8 cut(s)	20, 34, 99, 501, 605, 846, 1236, 1251
TatI	WGTACW	3 cut(s)	281, 1204, 1218
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	3 cut(s)	41, 221, 1067
Tru1I	TTAA	2 cut(s)	156, 267
Tru9I	TTAA	2 cut(s)	156, 267
TscAI	CASTG	4 cut(s)	52, 909, 933, 1110
TseFI	GTSAC	2 cut(s)	452, 872
TseI	GCWGC	2 cut(s)	1213, 1306
Tsp45I	GTSAC	2 cut(s)	452, 872
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	4 cut(s)	52, 909, 933, 1110
VpaK11BI	GGWCC	3 cut(s)	443, 801, 1058
XceI	RCATGY	1 cut(s)	1313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	215, 287, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.