Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Forward (+)

1998412 .. 2000965

Gene Structure 2554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1027800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCTCGGTATCTTATGGAATTGTATCAAAATAATTTGGAGTATAGTGGGGATGTGATGAGTGCAATAGTTCCTTTGATGAAACTTTTGTCCCTCACGGTTATCGGACTGGTTCTTTCGCACCCGAAAACTCAATTGATACCCAGAGCTACTTTTAAGCTCCTCAGCAAGCTTGTTTTCGCCTTGTTCTTGCCCTGTCTAATCTTTACCGAACTAGGTGAATCCATTACACTTGAAAACTTTATTCAGTGGTGGTTTATCCCAGTAAATGTGTTAGTGAGTACGCTTATTGGTTGCTTCCTCGGGTACTTAGTGGTGATTATATGTCGTCCTCCCCCACAGTTGAACAGATTTACCATTATCATGACTGCATTTGGGAATACTGGAAATCTCCCACTCGCCATTGTTGGATCTGTCTGTCATACTCCGAAAAACCCATTTGGACAGCATTGTCACTCCAGAGGGGTGGCTTATGTCTCTTTTGCCCAATGGGTTGCTGTAATTCTTGTATATACCTTTGTTTACCACATGATGGAGCCTCCGTTGGAGTACTATGAGATTGTTGAAGAAGGGGGTGAGAAGGACGAACCACCAACTAACGATATTAGCAGGCCTCTACTTGTAGAAGCTGAATGGCCGGGTATTGAAGAAAAAGAAACCGAGCATTCCAAGACACCCTTTATTGCTAGAATTTTCAAAAGCATCTCAAGTGTTTCACAGACCACTTTGCCAGATGTTGATCTCTCAGGAGAAGGTGGCGGAAACAGTCCCAGGTCGATTAGGTGTTTGGCGGAACCTAGGGTGGTCAGGAGGATGAGAATTGTTGCTGAGCAAACTCCATTACAGCACATAATGCAACCCCCAACAATCGCCTCTTTACTGGCTATCATCATCGGGACAGTACCTGTGTTAAAAGCTTTTTTCTTCGGAGAGGATGCTCCACTATCCTTCATCACAGACAGTTTAGAGATTTTAGCCGGTGCAATGGTGCCTTCGGTGATGCTTATTCTTGGGGGTATGCTTGCAGAGGGGCCAAATGAGTCTACACTCGGCCTCCGGACAACCGTTGGTATAACTGTGGCAAGGCTTTTACTGCTTCCTCTGGTGGGAATTGGTATAGTGGCGTTGGCTGACAAGCTCAATTTTCTGGTCGATGACGATGCAATGTACAGGTTTGTGCTTTTGATGCAGTACACGACACCAAGTGCAATTTTATTGGGAGCAATTGCGAGCTTGAGGGGTTACGCAGTCAGCGAGGCTTCGGCACTTCTCTTCTGGCAGCATGTGTTCGCTCTCTTCTCCCTTTCCTTGTACGTTGTCATCTACTTTAAATTAGTAACATTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

450

Amino Acids

49.58

Weight (kDa)

5.56

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	22 - 439	9.5e-96	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	988
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	1043
AccIII	TCCGGA	1 cut(s)	1056
AciI	CCGC	2 cut(s)	759, 791
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	1205
AfaI	GTAC	7 cut(s)	283, 308, 551, 903, 1169, 1193, 1313
AfiI	CCNNNNNNNGG	2 cut(s)	532, 1106
AgsI	TTSAA	5 cut(s)	236, 346, 566, 647, 697
AjnI	CCWGG	1 cut(s)	770
AluBI	AGCT	7 cut(s)	149, 160, 172, 629, 917, 1138, 1233
AluI	AGCT	7 cut(s)	149, 160, 172, 629, 917, 1138, 1233
Alw26I	GTCTC	2 cut(s)	9, 481
AlwI	GGATC	1 cut(s)	418
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	1056
AoxI	GGCC	4 cut(s)	611, 635, 1031, 1051
ApeKI	GCWGC	1 cut(s)	1279
ApoI	RAATTY	1 cut(s)	690
AspA2I	CCTAGG	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	1031
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	4 cut(s)	230, 328, 587, 1009
AvaI	CYCGRG	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	988
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	1291
BccI	CCATC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	1142, 1176
BciT130I	CCWGG	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	9, 481
BfaI	CTAG	3 cut(s)	215, 687, 798
BisI	GCNGC	1 cut(s)	1280
BlnI	CCTAGG	1 cut(s)	797
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	1281
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	639, 772
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	4 cut(s)	537, 795, 990, 1032
BmrFI	CCNGG	2 cut(s)	639, 772
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	5 cut(s)	711, 925, 990, 1150, 1176
BmuI	ACTGGG	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	2 cut(s)	691, 1255
BpuMI	CCSGG	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	3 cut(s)	301, 770, 797
BsaWI	WCCGGW	1 cut(s)	1056
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 1038, 1068
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 1106
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	4 cut(s)	114, 263, 388, 885
Bse3DI	GCAATG	2 cut(s)	990, 1170
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	1056
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	301, 770, 797
BseGI	GGATG	3 cut(s)	58, 819, 940
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	532, 1106
BseMI	GCAATG	2 cut(s)	990, 1170
BseMII	CTCAG	3 cut(s)	178, 759, 819
BseNI	ACTGG	4 cut(s)	114, 263, 388, 885
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	1291
BshFI	GGCC	4 cut(s)	613, 637, 1033, 1053
BshNI	GGYRCC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	638, 978, 1057
BslFI	GGGAC	3 cut(s)	76, 753, 910
BslI	CCNNNNNNNGG	2 cut(s)	532, 1106
BsmAI	GTCTC	2 cut(s)	9, 481
BsmFI	GGGAC	3 cut(s)	76, 753, 910
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	613, 637, 1033, 1053
BsoBI	CYCGRG	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	1056
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	2 cut(s)	410, 739
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	2 cut(s)	759, 791
BspANI	GGCC	4 cut(s)	613, 637, 1033, 1053
BspCNI	CTCAG	3 cut(s)	177, 758, 820
BspEI	TCCGGA	1 cut(s)	1056
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	537, 795, 990, 1032
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	988
BsrDI	GCAATG	2 cut(s)	990, 1170
BsrFI	RCCGGY	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	4 cut(s)	114, 263, 388, 885
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	3 cut(s)	301, 770, 797
BssMI	GATC	2 cut(s)	410, 739
BssT1I	CCWWGG	1 cut(s)	797
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	7 cut(s)	100, 342, 767, 901, 962, 1066, 1078
Bst6I	CTCTTC	2 cut(s)	1277, 1301
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstAUI	TGTACA	1 cut(s)	1167
BstC8I	GCNNGC	4 cut(s)	170, 611, 1023, 1231
BstDEI	CTNAG	4 cut(s)	164, 310, 745, 828
BstF5I	GGATG	3 cut(s)	58, 819, 940
BstKTI	GATC	2 cut(s)	413, 742
BstMAI	GTCTC	2 cut(s)	9, 481
BstMBI	GATC	2 cut(s)	410, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
BstNI	CCWGG	1 cut(s)	772
BstNSI	RCATGY	1 cut(s)	1286
BstSCI	CCNGG	2 cut(s)	637, 770
BstV1I	GCAGC	1 cut(s)	1291
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	613, 637, 1033, 1053
BtsCI	GGATG	3 cut(s)	58, 819, 940
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	4 cut(s)	170, 611, 1023, 1231
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	1 cut(s)	1031
Csp6I	GTAC	7 cut(s)	282, 307, 550, 902, 1168, 1192, 1312
CviAII	CATG	3 cut(s)	364, 529, 1283
CviQI	GTAC	7 cut(s)	282, 307, 550, 902, 1168, 1192, 1312
DdeI	CTNAG	4 cut(s)	164, 310, 745, 828
DpnI	GATC	2 cut(s)	412, 741
DpnII	GATC	2 cut(s)	410, 739
DraI	TTTAAA	1 cut(s)	1330
DraIII	CACNNNGTG	1 cut(s)	1205
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	2 cut(s)	1277, 1301
EarI	CTCTTC	2 cut(s)	1277, 1301
EciI	GGCGGA	2 cut(s)	774, 806
Eco130I	CCWWGG	1 cut(s)	797
Eco147I	AGGCCT	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	797
FaeI	CATG	3 cut(s)	367, 532, 1286
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	3 cut(s)	76, 753, 910
FatI	CATG	3 cut(s)	363, 528, 1282
FblI	GTMKAC	1 cut(s)	1043
Fnu4HI	GCNGC	1 cut(s)	1280
FokI	GGATG	3 cut(s)	65, 826, 947
Fsp4HI	GCNGC	1 cut(s)	1280
FspBI	CTAG	3 cut(s)	215, 687, 798
GluI	GCNGC	1 cut(s)	1280
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	4 cut(s)	613, 637, 1033, 1053
HapII	CCGG	3 cut(s)	638, 978, 1057
Hin1II	CATG	3 cut(s)	367, 532, 1286
HindIII	AAGCTT	2 cut(s)	170, 915
HinfI	GANTC	2 cut(s)	221, 1040
HpaII	CCGG	3 cut(s)	638, 978, 1057
HphI	GGTGA	4 cut(s)	230, 328, 587, 1009
Hpy166II	GTNNAC	3 cut(s)	523, 1044, 1194
Hpy188I	TCNGA	4 cut(s)	107, 429, 929, 1349
Hpy188III	TCNNGA	6 cut(s)	364, 459, 747, 808, 895, 1057
Hpy8I	GTNNAC	3 cut(s)	523, 1044, 1194
HpyAV	CCTTC	5 cut(s)	563, 574, 746, 958, 1002
HpyCH4III	ACNGT	7 cut(s)	100, 342, 767, 901, 962, 1066, 1078
HpyCH4IV	ACGT	1 cut(s)	1314
HpyCH4V	TGCA	8 cut(s)	65, 371, 856, 983, 1025, 1163, 1189, 1208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
HpyF3I	CTNAG	4 cut(s)	164, 310, 745, 828
HpySE526I	ACGT	1 cut(s)	1314
Hsp92II	CATG	3 cut(s)	367, 532, 1286
Kpn2I	TCCGGA	1 cut(s)	1056
Kzo9I	GATC	2 cut(s)	410, 739
LmnI	GCTCC	4 cut(s)	165, 535, 943, 1220
Lsp1109I	GCAGC	1 cut(s)	1291
LweI	GCATC	5 cut(s)	711, 925, 990, 1150, 1176
MaeI	CTAG	3 cut(s)	215, 687, 798
MaeII	ACGT	1 cut(s)	1314
MaeIII	GTNAC	3 cut(s)	452, 1241, 1336
MalI	GATC	2 cut(s)	412, 741
MboI	GATC	2 cut(s)	410, 739
MboII	GAAGA	5 cut(s)	578, 659, 916, 1264, 1288
MfeI	CAATTG	2 cut(s)	134, 1224
MflI	RGATCY	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	1049
MmeI	TCCRAC	2 cut(s)	388, 525
MroI	TCCGGA	1 cut(s)	1056
MseI	TTAA	3 cut(s)	156, 911, 1329
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	3 cut(s)	638, 978, 1057
MspR9I	CCNGG	2 cut(s)	639, 772
MunI	CAATTG	2 cut(s)	134, 1224
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	772
MwoI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	2 cut(s)	410, 739
NlaIII	CATG	3 cut(s)	367, 532, 1286
NlaIV	GGNNCC	4 cut(s)	537, 795, 990, 1032
NmeAIII	GCCGAG	1 cut(s)	1029
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	1286
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	1251
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	1281
PleI	GAGTC	1 cut(s)	1048
PpsI	GAGTC	1 cut(s)	1048
Psp6I	CCWGG	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	4 cut(s)	537, 795, 990, 1032
PspPI	GGNCC	1 cut(s)	1031
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	7 cut(s)	283, 308, 551, 903, 1169, 1193, 1313
RsaNI	GTAC	7 cut(s)	282, 307, 550, 902, 1168, 1192, 1312
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	156, 911, 1329
SatI	GCNGC	1 cut(s)	1280
Sau3AI	GATC	2 cut(s)	410, 739
Sau96I	GGNCC	1 cut(s)	1031
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	2 cut(s)	639, 772
SfaNI	GCATC	5 cut(s)	711, 925, 990, 1150, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	706, 1234
SmoI	CTYRAG	2 cut(s)	706, 1234
SseBI	AGGCCT	1 cut(s)	613
SsiI	CCGC	2 cut(s)	759, 791
SspMI	CTAG	3 cut(s)	215, 687, 798
StuI	AGGCCT	1 cut(s)	613
StyD4I	CCNGG	2 cut(s)	637, 770
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	7 cut(s)	100, 342, 767, 901, 962, 1066, 1078
TaiI	ACGT	1 cut(s)	1317
TaqI	TCGA	2 cut(s)	776, 1152
TatI	WGTACW	3 cut(s)	549, 1167, 1191
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	156, 911, 1329
Tru9I	TTAA	3 cut(s)	156, 911, 1329
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	1279
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	95, 940
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	254
Van91I	CCANNNNNTGG	1 cut(s)	532
XapI	RAATTY	1 cut(s)	690
XceI	RCATGY	1 cut(s)	1286
XmaJI	CCTAGG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	1043
XspI	CTAG	3 cut(s)	215, 687, 798
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.