Rh3DG347900

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002715
Physical Location & Seq
Forward (+)
39573710 .. 39575616
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG347900.1

Sequence Viewer

Length: 1416 bp
ATGAATTATAGCCACAAACAGAGGTCGATAGCGATGGAAAACATACTTGCTTCATTCCAAGGAACTCTAAAAGTAGAAGTGCTAAGTGCAGTAGTGCCTTTATTAATGTTCCTGTCTATGGGTCTGATTGGCTTAGTTCTTGCCCACCCAAAGTACCAACTAGTCCCCAGAGCTACTTTCACATTTCTAAGCAAGCTGGTCTTTGTTGTCTTCTTGCCCTGCTTGATCTTCACATATCTTGGCCCAACAATCACTCTCAAAAACTTGCTGCTCTGGTGGTTCATTCCTGTAAATGTTGTTCTAAGTACCGCCATTGGCTGCGTATTGGGGTTGCTGGTGGCGCTAATCTGTAGGCCTCCCCGCGACTACTTTCGATTCACCATAATAATGACTGCGTTTGGAAACACAGGTAATCTGCCCCTTGCAATTGTTACCTCTATTTGTCAAAGTGATGATAACCCTTTCGGTTCTGATTGTTACGACTATGGTGTGTCATATGTATCATTTTCCCAATGGGTTTCTGTTATTCTCGTTTACACACTTGTTTACCATATGATGGAGCCCCCATTAAGGGATCAAAGTCTACTCGTTGAGGAAGAAGAAGATGATGAAGATGAGATATTTGAGGAAATTATGTCTGGTCCAAATTATGAAGATGAAAATCATCTGAGTAGGCCTCTTCTTGTTGAGGCTGAATGGCCTGGAATTGAAGATAAAGAAACTGAGCACTGTAAGACACCCTTTATTGCAAGACTTTTTACTACTAGAAGCTCCTCTGCTCGACTTTCAGTCTCAACTATTCCAGATGTAATCGGCTCAACTGAAGAAGAGGGAACATCCAACTACAGTTCCAAGTGTTTGGCTGAGCCTAGAATGGTAAGGAAGTTCAGATCAGTAGTGGGGATGACACCAATTCATTACATTCTTCAGCCCCCAACAATTGCTTCCCTCTTGGCTATAATCATTGGGATGGTCCCCACGTTGAAATCAATTGTTTACGATGACGATGCAGTTCTTTCATTTATTACAGACAGCTTAGAAATTCTATCCGAGGCTATGGTGCCTTCAGCTATGCTTGTTCTCGGAGGATCGCTTGCTCAAGGACCAAATGAATCCAATCTCGGAGTTCGAACTACAGTTGGGATTATTATTGCAAGACTTTTTATACTTCCTTTGATTGGAATTGGTGTCATTCATTTGGCCGATAAATGGAATATTCTAATAGCCGGAGATCAAATGTTCCGGTTGGTACTTTTGCTGCAGTACACAATGCCAAGTGCCATCTTGTTAGGAGCAATTGCAAGCTTGAGGGGTTATGCAGTTAAGGAGGCTTCAGCACTGCTCTTCTGGCAGCATGTTGTTGCTGTTTTGTCCATTTCATTCTATATAATTGTCTACTTCTATATCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

471

Amino Acids

52.36

Weight (kDa)

4.99

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 31 - 463 4.2e-87 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 556
AccI GTMKAC 2 cut(s) 583, 1395
AccII CGCG 1 cut(s) 363
AciI CCGC 2 cut(s) 309, 361
AclWI GGATC 2 cut(s) 582, 1096
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 1 cut(s) 1041
AcuI CTGAAG 4 cut(s) 843, 911, 1050, 1317
AfaI GTAC 4 cut(s) 155, 307, 1251, 1265
AfiI CCNNNNNNNGG 6 cut(s) 118, 556, 570, 571, 1178, 1209
AgsI TTSAA 2 cut(s) 710, 985
AhdI GACNNNNNGTC 1 cut(s) 788
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 700
AjuI GAANNNNNNNTTGG 2 cut(s) 928, 960
AluBI AGCT 6 cut(s) 173, 196, 771, 1035, 1070, 1305
AluI AGCT 6 cut(s) 173, 196, 771, 1035, 1070, 1305
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 2 cut(s) 582, 1096
AoxI GGCC 5 cut(s) 241, 353, 674, 698, 1200
ApeKI GCWGC 4 cut(s) 268, 318, 1258, 1351
ApoI RAATTY 1 cut(s) 1041
AseI ATTAAT 1 cut(s) 104
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 4 cut(s) 242, 641, 973, 1103
AsuHPI GGTGA 1 cut(s) 370
AsuII TTCGAA 1 cut(s) 1129
AvaII GGWCC 3 cut(s) 641, 973, 1103
BanI GGYRCC 1 cut(s) 1060
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 4 cut(s) 255, 305, 1245, 1363
BccI CCATC 4 cut(s) 28, 550, 964, 1289
BcgI CGANNNNNNTGC 2 cut(s) 989, 1023
BciT130I CCWGG 1 cut(s) 702
BcoDI GTCTC 1 cut(s) 796
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 3 cut(s) 161, 765, 870
BfmI CTRYAG 4 cut(s) 349, 844, 1134, 1259
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 4 cut(s) 269, 319, 1259, 1352
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 4 cut(s) 270, 320, 1260, 1353
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 3 cut(s) 641, 973, 1103
BmeRI GACNNNNNGTC 1 cut(s) 788
BmgT120I GGNCC 4 cut(s) 242, 641, 973, 1103
BmiI GGNNCC 3 cut(s) 561, 975, 1062
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 997
BpiI GAAGAC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 661, 693
Bpu1102I GCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 1 cut(s) 1129
BpuEI CTTGAG 2 cut(s) 1083, 1327
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 58, 1050
BsaWI WCCGGW 1 cut(s) 1242
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 556, 570, 571, 1178, 1209
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 58, 1050
BseGI GGATG 3 cut(s) 836, 909, 975
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 6 cut(s) 118, 556, 570, 571, 1178, 1209
BseMII CTCAG 3 cut(s) 659, 714, 855
BseRI GAGGAG 1 cut(s) 763
BseXI GCAGC 4 cut(s) 255, 305, 1245, 1363
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 5 cut(s) 243, 355, 676, 700, 1202
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 2 cut(s) 1227, 1243
BslFI GGGAC 2 cut(s) 149, 959
BslI CCNNNNNNNGG 6 cut(s) 118, 556, 570, 571, 1178, 1209
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 2 cut(s) 149, 959
BsnI GGCC 5 cut(s) 243, 355, 676, 700, 1202
Bsp119I TTCGAA 1 cut(s) 1129
Bsp1286I GDGCHC 2 cut(s) 564, 729
Bsp143I GATC 5 cut(s) 225, 574, 890, 1088, 1231
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 2 cut(s) 309, 361
BspANI GGCC 5 cut(s) 243, 355, 676, 700, 1202
BspCNI CTCAG 3 cut(s) 660, 715, 856
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 3 cut(s) 561, 975, 1062
BspMAI CTGCAG 1 cut(s) 1263
BspPI GGATC 2 cut(s) 582, 1096
BspQI GCTCTTC 1 cut(s) 1349
BspT104I TTCGAA 1 cut(s) 1129
BspT107I GGYRCC 1 cut(s) 1060
BssECI CCNNGG 2 cut(s) 58, 1050
BssMI GATC 5 cut(s) 225, 574, 890, 1088, 1231
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 3 cut(s) 731, 848, 1138
Bst6I CTCTTC 3 cut(s) 684, 822, 1349
BstBI TTCGAA 1 cut(s) 1129
BstC8I GCNNGC 3 cut(s) 194, 1095, 1303
BstDEI CTNAG 8 cut(s) 83, 133, 188, 302, 668, 723, 864, 1036
BstF5I GGATG 3 cut(s) 836, 909, 975
BstFNI CGCG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 5 cut(s) 228, 577, 893, 1091, 1234
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 5 cut(s) 225, 574, 890, 1088, 1231
BstMWI GCNNNNNNNGC 2 cut(s) 340, 1348
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 1358
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 4 cut(s) 349, 844, 1134, 1259
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 255, 305, 1245, 1363
BstV2I GAAGAC 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 859
BsuRI GGCC 5 cut(s) 243, 355, 676, 700, 1202
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 836, 909, 975
BtsI GCAGTG 1 cut(s) 1337
BtsIMutI CAGTG 2 cut(s) 727, 1337
Cac8I GCNNGC 3 cut(s) 194, 1095, 1303
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 4 cut(s) 242, 641, 973, 1103
Csp6I GTAC 4 cut(s) 154, 306, 1250, 1264
CviAII CATG 1 cut(s) 1355
CviQI GTAC 4 cut(s) 154, 306, 1250, 1264
DdeI CTNAG 8 cut(s) 83, 133, 188, 302, 668, 723, 864, 1036
DpnI GATC 5 cut(s) 227, 576, 892, 1090, 1233
DpnII GATC 5 cut(s) 225, 574, 890, 1088, 1231
DriI GACNNNNNGTC 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 3 cut(s) 684, 822, 1349
Eam1105I GACNNNNNGTC 1 cut(s) 788
EarI CTCTTC 3 cut(s) 684, 822, 1349
Eco130I CCWWGG 1 cut(s) 58
Eco147I AGGCCT 2 cut(s) 355, 676
Eco24I GRGCYC 1 cut(s) 564
Eco47I GGWCC 3 cut(s) 641, 973, 1103
Eco57I CTGAAG 4 cut(s) 843, 911, 1050, 1317
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 1358
FalI AAGNNNNNCTT 4 cut(s) 185, 217, 725, 757
FaqI GGGAC 2 cut(s) 149, 959
FatI CATG 1 cut(s) 1354
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 2 cut(s) 496, 552
FblI GTMKAC 2 cut(s) 583, 1395
Fnu4HI GCNGC 4 cut(s) 269, 319, 1259, 1352
FokI GGATG 3 cut(s) 823, 916, 982
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 4 cut(s) 269, 319, 1259, 1352
FspBI CTAG 3 cut(s) 161, 765, 870
GlaI GCGC 1 cut(s) 342
GluI GCNGC 4 cut(s) 269, 319, 1259, 1352
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 5 cut(s) 243, 355, 676, 700, 1202
HapII CCGG 2 cut(s) 1227, 1243
HhaI GCGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 1358
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 1303
HinfI GANTC 2 cut(s) 375, 1112
HpaII CCGG 2 cut(s) 1227, 1243
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 6 cut(s) 535, 547, 584, 997, 1266, 1396
Hpy188I TCNGA 7 cut(s) 126, 472, 669, 890, 1051, 1085, 1124
Hpy188III TCNNGA 1 cut(s) 803
Hpy8I GTNNAC 6 cut(s) 535, 547, 584, 997, 1266, 1396
HpyAV CCTTC 1 cut(s) 1074
HpyCH4III ACNGT 3 cut(s) 731, 848, 1138
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 8 cut(s) 89, 425, 749, 1010, 1154, 1261, 1301, 1319
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 1348
HpyF3I CTNAG 8 cut(s) 83, 133, 188, 302, 668, 723, 864, 1036
HpySE526I ACGT 1 cut(s) 980
Hsp92II CATG 1 cut(s) 1358
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 5 cut(s) 225, 574, 890, 1088, 1231
LguI GCTCTTC 1 cut(s) 1349
LmnI GCTCC 3 cut(s) 559, 776, 1292
Lsp1109I GCAGC 4 cut(s) 255, 305, 1245, 1363
LweI GCATC 1 cut(s) 997
MaeI CTAG 3 cut(s) 161, 765, 870
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 2 cut(s) 430, 476
MalI GATC 5 cut(s) 227, 576, 892, 1090, 1233
MboI GATC 5 cut(s) 225, 574, 890, 1088, 1231
MfeI CAATTG 4 cut(s) 426, 939, 990, 1296
MhlI GDGCHC 2 cut(s) 564, 729
MmeI TCCRAC 1 cut(s) 864
MseI TTAA 3 cut(s) 104, 569, 1323
MslI CAYNNNNRTG 2 cut(s) 386, 968
MspI CCGG 2 cut(s) 1227, 1243
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 4 cut(s) 426, 939, 990, 1296
MvaI CCWGG 1 cut(s) 702
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 340, 1348
NdeI CATATG 2 cut(s) 496, 552
NdeII GATC 5 cut(s) 225, 574, 890, 1088, 1231
NlaIII CATG 1 cut(s) 1358
NlaIV GGNNCC 3 cut(s) 561, 975, 1062
NspI RCATGY 1 cut(s) 1358
NspV TTCGAA 1 cut(s) 1129
PceI AGGCCT 2 cut(s) 355, 676
PciSI GCTCTTC 1 cut(s) 1349
PfeI GAWTC 2 cut(s) 375, 1112
PflMI CCANNNNNTGG 1 cut(s) 556
PkrI GCNGC 4 cut(s) 270, 320, 1260, 1353
PshBI ATTAAT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 561, 975, 1062
PspPI GGNCC 4 cut(s) 242, 641, 973, 1103
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PstI CTGCAG 1 cut(s) 1263
RsaI GTAC 4 cut(s) 155, 307, 1251, 1265
RsaNI GTAC 4 cut(s) 154, 306, 1250, 1264
RseI CAYNNNNRTG 2 cut(s) 386, 968
SapI GCTCTTC 1 cut(s) 1349
SaqAI TTAA 3 cut(s) 104, 569, 1323
SatI GCNGC 4 cut(s) 269, 319, 1259, 1352
Sau3AI GATC 5 cut(s) 225, 574, 890, 1088, 1231
Sau96I GGNCC 4 cut(s) 242, 641, 973, 1103
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 564, 729
SfaNI GCATC 1 cut(s) 997
SfcI CTRYAG 4 cut(s) 349, 844, 1134, 1259
SfuI TTCGAA 1 cut(s) 1129
SinI GGWCC 3 cut(s) 641, 973, 1103
SmiMI CAYNNNNRTG 2 cut(s) 386, 968
SmlI CTYRAG 2 cut(s) 1098, 1306
SmoI CTYRAG 2 cut(s) 1098, 1306
SpeI ACTAGT 1 cut(s) 160
SseBI AGGCCT 2 cut(s) 355, 676
SsiI CCGC 2 cut(s) 309, 361
SspI AATATT 1 cut(s) 1216
SspMI CTAG 3 cut(s) 161, 765, 870
StuI AGGCCT 2 cut(s) 355, 676
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 731, 848, 1138
TaiI ACGT 1 cut(s) 983
TaqI TCGA 4 cut(s) 26, 373, 781, 1129
TatI WGTACW 1 cut(s) 1263
TfiI GAWTC 2 cut(s) 375, 1112
Tru1I TTAA 3 cut(s) 104, 569, 1323
Tru9I TTAA 3 cut(s) 104, 569, 1323
TscAI CASTG 2 cut(s) 734, 1344
TseI GCWGC 4 cut(s) 268, 318, 1258, 1351
TspRI CASTG 2 cut(s) 734, 1344
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 3 cut(s) 641, 973, 1103
VspI ATTAAT 1 cut(s) 104
XapI RAATTY 1 cut(s) 1041
XceI RCATGY 1 cut(s) 1358
XmiI GTMKAC 2 cut(s) 583, 1395
XspI CTAG 3 cut(s) 161, 765, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.