Rh3BG347800

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002715
Physical Location & Seq
Forward (+)
38187582 .. 38188364
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG347800.1

Sequence Viewer

Length: 783 bp
ATGTCGGGTCCAAATTATGAAGATGAAAATCATCTGAGTAGGCCTCTTCTTGTTGAGGCTGAATGGCCTGGAATTGAAGATAAAGAAACTGAGCACTGTAAGACACCCTTTATTGCAAGACTTTTTACTACTAGAAGCTCCTCTGCTCGACTTTCAGTCTCAACTATTCCAGATGTAATCGGCTCAACTGAAGAAGAGGAAACATCCAACTACAGTTCCAAGTGTTTGGCTGAGCCTAGAATGGTAAGGAAGTTCAGATCAGTAGTGGGGATGACACCAATTCATTATATTCTTCAGCCCCCAACAATTGCTTCCCTCTTGGCTATAATCATTGGGATGGTCCCCACGTTGAAATCAATTGTTTACGATGACGATGCAGTTCTTTCATTTATTACAGACAGCTTAGAAATTCTATCCGAGGCTATGGTGCCTTCAGCTATGCTTGTTCTTGGAGGATCGCTTGCTCAAGGACCAAATGAATCCAATCTCGGAGTTCGAACTACAGTTGGGATTATTATTGCAAGACTTTTTATACTTCCTTTGATTGGAATTGGTGTCATTCATTTGGCCGATAAATGGAATATTCTAATAGCCGGAGATCAAATGTTCCGGTTGGTACTTTTGCTGCAGTACACAATGCCAAGTGCCATCTTGTTAGGAGCAATTGCAAGCTTGAGGGGTTATGCAGTTAAGGAGGCTTCAGCACTGCTCTTCTGGCAGCATGTTGTTGCTGTTTTGTCCATTTCATTCTATATAATTGTCTACTTCTATATCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

260

Amino Acids

28.62

Weight (kDa)

5.24

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 60 - 252 1.6e-43 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 762
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 4 cut(s) 210, 278, 417, 684
AfaI GTAC 2 cut(s) 618, 632
AfiI CCNNNNNNNGG 2 cut(s) 545, 576
AgsI TTSAA 2 cut(s) 77, 352
AhdI GACNNNNNGTC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 138, 402, 437, 672
AluI AGCT 4 cut(s) 138, 402, 437, 672
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 463
AoxI GGCC 3 cut(s) 41, 65, 567
ApeKI GCWGC 2 cut(s) 625, 718
ApoI RAATTY 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 8, 340, 470
AsuII TTCGAA 1 cut(s) 496
AvaII GGWCC 3 cut(s) 8, 340, 470
BanI GGYRCC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 612, 730
BccI CCATC 2 cut(s) 331, 656
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 132, 237
BfmI CTRYAG 3 cut(s) 211, 501, 626
BisI GCNGC 2 cut(s) 626, 719
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 2 cut(s) 627, 720
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 3 cut(s) 8, 340, 470
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 8, 340, 470
BmiI GGNNCC 3 cut(s) 9, 342, 429
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu1102I GCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 2 cut(s) 450, 694
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 609
Bsc4I CCNNNNNNNGG 2 cut(s) 545, 576
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 203, 276, 342
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 545, 576
BseMII CTCAG 3 cut(s) 26, 81, 222
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 612, 730
BshFI GGCC 3 cut(s) 43, 67, 569
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 594, 610
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 545, 576
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 3 cut(s) 43, 67, 569
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 257, 455, 598
Bsp1720I GCTNAGC 1 cut(s) 231
BspANI GGCC 3 cut(s) 43, 67, 569
BspCNI CTCAG 3 cut(s) 27, 82, 223
BspLI GGNNCC 3 cut(s) 9, 342, 429
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 716
BspT104I TTCGAA 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 257, 455, 598
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 98, 215, 505
Bst6I CTCTTC 3 cut(s) 51, 189, 716
BstBI TTCGAA 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 462, 670
BstDEI CTNAG 4 cut(s) 35, 90, 231, 403
BstF5I GGATG 3 cut(s) 203, 276, 342
BstKTI GATC 3 cut(s) 260, 458, 601
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 257, 455, 598
BstMWI GCNNNNNNNGC 1 cut(s) 715
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 3 cut(s) 211, 501, 626
BstV1I GCAGC 2 cut(s) 612, 730
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 3 cut(s) 43, 67, 569
BtsCI GGATG 3 cut(s) 203, 276, 342
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 2 cut(s) 94, 704
Cac8I GCNNGC 2 cut(s) 462, 670
Cfr13I GGNCC 3 cut(s) 8, 340, 470
Csp6I GTAC 2 cut(s) 617, 631
CviAII CATG 1 cut(s) 722
CviQI GTAC 2 cut(s) 617, 631
DdeI CTNAG 4 cut(s) 35, 90, 231, 403
DpnI GATC 3 cut(s) 259, 457, 600
DpnII GATC 3 cut(s) 257, 455, 598
DriI GACNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 3 cut(s) 51, 189, 716
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 3 cut(s) 51, 189, 716
Eco147I AGGCCT 1 cut(s) 43
Eco47I GGWCC 3 cut(s) 8, 340, 470
Eco57I CTGAAG 4 cut(s) 210, 278, 417, 684
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 725
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 721
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 626, 719
FokI GGATG 3 cut(s) 190, 283, 349
Fsp4HI GCNGC 2 cut(s) 626, 719
FspBI CTAG 2 cut(s) 132, 237
GluI GCNGC 2 cut(s) 626, 719
HaeIII GGCC 3 cut(s) 43, 67, 569
HapII CCGG 2 cut(s) 594, 610
Hin1II CATG 1 cut(s) 725
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 1 cut(s) 479
HpaII CCGG 2 cut(s) 594, 610
Hpy166II GTNNAC 3 cut(s) 364, 633, 763
Hpy188I TCNGA 4 cut(s) 36, 257, 418, 491
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 3 cut(s) 364, 633, 763
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 3 cut(s) 98, 215, 505
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 6 cut(s) 116, 377, 521, 628, 668, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 715
HpyF3I CTNAG 4 cut(s) 35, 90, 231, 403
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 725
Kzo9I GATC 3 cut(s) 257, 455, 598
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 2 cut(s) 143, 659
LpnPI CCDG 6 cut(s) 54, 81, 183, 607, 623, 700
Lsp1109I GCAGC 2 cut(s) 612, 730
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 132, 237
MaeII ACGT 1 cut(s) 347
MalI GATC 3 cut(s) 259, 457, 600
MboI GATC 3 cut(s) 257, 455, 598
MboII GAAGA 7 cut(s) 32, 38, 89, 203, 206, 284, 703
MfeI CAATTG 3 cut(s) 306, 357, 663
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 9 cut(s) 13, 72, 279, 306, 357, 408, 549, 663, 756
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 9 cut(s) 49, 54, 151, 190, 326, 412, 446, 669, 688
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 2 cut(s) 594, 610
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 3 cut(s) 306, 357, 663
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 715
NdeII GATC 3 cut(s) 257, 455, 598
NlaIII CATG 1 cut(s) 725
NlaIV GGNNCC 3 cut(s) 9, 342, 429
NspI RCATGY 1 cut(s) 725
NspV TTCGAA 1 cut(s) 496
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 716
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 2 cut(s) 627, 720
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 9, 342, 429
PspPI GGNCC 3 cut(s) 8, 340, 470
PstI CTGCAG 1 cut(s) 630
RsaI GTAC 2 cut(s) 618, 632
RsaNI GTAC 2 cut(s) 617, 631
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 2 cut(s) 626, 719
Sau3AI GATC 3 cut(s) 257, 455, 598
Sau96I GGNCC 3 cut(s) 8, 340, 470
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 140, 350, 404, 439, 674
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 3 cut(s) 211, 501, 626
SfuI TTCGAA 1 cut(s) 496
SinI GGWCC 3 cut(s) 8, 340, 470
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 465, 673
SmoI CTYRAG 2 cut(s) 465, 673
Sse9I AATT 9 cut(s) 13, 72, 279, 306, 357, 408, 549, 663, 756
SseBI AGGCCT 1 cut(s) 43
SspI AATATT 1 cut(s) 583
SspMI CTAG 2 cut(s) 132, 237
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 98, 215, 505
TaiI ACGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 148, 496
TasI AATT 9 cut(s) 13, 72, 279, 306, 357, 408, 549, 663, 756
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 2 cut(s) 101, 711
TseI GCWGC 2 cut(s) 625, 718
TspDTI ATGAA 7 cut(s) 33, 39, 272, 375, 492, 551, 735
TspRI CASTG 2 cut(s) 101, 711
VpaK11BI GGWCC 3 cut(s) 8, 340, 470
XapI RAATTY 1 cut(s) 408
XceI RCATGY 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 762
XspI CTAG 2 cut(s) 132, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.