Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

23788310 .. 23789433

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATTGCTTCAGATTCAAAGAATGGGAATGGGAATGGGAATGGGAATCAAGATGAATATGATCTTGCTAGGCCACTTCTCGTTGAGGTTGCATGGCCTGGAATGGAAGATAAGGAAACTGAACATGGCGAGACGCCCTTTATTGCAAGGCTTTTTAATAGCAGCAATGGTCCTAGTAAGTGTCTGGCAGAGCCTAGGGTCGTTAGGAAAATCAGATCTGTTTCTTGGATGACACCAATTCATGGCATTCTTCAGCCGCCAACAATTGCTTTTCTGTTGGCCATTGTCATTGGCATGATTCCCACCTTGAAATCTCTTGTTTTTGATGATGACCAAGTCCTTTCATTCCTCACAGATAACTTGGAAATTGTAGCTGAGGCCATGGTGCCTTCGGCTGTGCTTGTTCTTGGAGGAATGCTAGCTGAAGGTCCAAACGAATCCAATCTGGGAATGAGAACTACGATTGGGATTATTGTTGCAAGGCTTTTGGTACTTCCTTTAATTGGGATTGGTGTGGTTCTATTATCGGATAAATTGAACCTTTTGGTATCCGATGATCAATTGTATCGGTTTGTTCTTTTGCTGCAATACACCACACCTTCTGCCATATTGTTAGGAGCAGTTGCAAGCTTGAGGGGTTATGCAGTCAGAGAGGCTTCTGCTCTCCTCTTCTGGCAGCATATTGTTGCCGTCTTCTCCCTCTCGCTCTATTTAATTGTCTACTTCTACATTCTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

247

Amino Acids

26.82

Weight (kDa)

4.94

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	720
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	279
AcuI	CTGAAG	2 cut(s)	236, 444
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	242, 503
AgsI	TTSAA	3 cut(s)	18, 310, 538
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	3 cut(s)	374, 422, 630
AluI	AGCT	3 cut(s)	374, 422, 630
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	4 cut(s)	71, 95, 279, 378
ApeKI	GCWGC	3 cut(s)	162, 583, 676
AspA2I	CCTAGG	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	170, 428
AsuNHI	GCTAGC	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	170, 428
AvrII	CCTAGG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	685
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	174, 570, 688
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	4 cut(s)	69, 174, 195, 419
BfuI	GTATCC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	4 cut(s)	163, 257, 584, 677
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	4 cut(s)	164, 258, 585, 678
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	170, 428
BmgT120I	GGNCC	2 cut(s)	170, 428
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	685
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	194, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 503
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	194, 381
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	242, 503
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	174, 570, 688
BshFI	GGCC	4 cut(s)	73, 97, 281, 380
BshNI	GGYRCC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	242, 503
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	2 cut(s)	246, 420
BsnI	GGCC	4 cut(s)	73, 97, 281, 380
Bsp143I	GATC	3 cut(s)	61, 215, 556
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	4 cut(s)	73, 97, 281, 380
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	194, 381
BssMI	GATC	3 cut(s)	61, 215, 556
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	2 cut(s)	194, 381
Bst2UI	CCWGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	674
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	420, 628
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	64, 218, 559
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	61, 215, 556
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	174, 570, 688
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	73, 97, 281, 380
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	420, 628
Cfr13I	GGNCC	2 cut(s)	170, 428
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	5 cut(s)	93, 125, 242, 295, 382
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	63, 217, 558
DpnII	GATC	3 cut(s)	61, 215, 556
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	2 cut(s)	194, 381
Eco47I	GGWCC	2 cut(s)	170, 428
Eco57I	CTGAAG	2 cut(s)	236, 444
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	194, 381
ErhI	CCWWGG	2 cut(s)	194, 381
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	5 cut(s)	96, 128, 245, 298, 385
FatI	CATG	5 cut(s)	92, 124, 241, 294, 381
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	4 cut(s)	163, 257, 584, 677
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	163, 257, 584, 677
FspBI	CTAG	4 cut(s)	69, 174, 195, 419
GluI	GCNGC	4 cut(s)	163, 257, 584, 677
HaeIII	GGCC	4 cut(s)	73, 97, 281, 380
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	96, 128, 245, 298, 385
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	4 cut(s)	14, 46, 298, 437
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	5 cut(s)	13, 215, 529, 553, 650
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	3 cut(s)	399, 419, 609
HpyCH4V	TGCA	6 cut(s)	92, 146, 479, 586, 626, 644
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	96, 128, 245, 298, 385
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	61, 215, 556
LmnI	GCTCC	1 cut(s)	617
LpnPI	CCDG	5 cut(s)	84, 111, 170, 431, 658
Lsp1109I	GCAGC	3 cut(s)	174, 570, 688
MaeI	CTAG	4 cut(s)	69, 174, 195, 419
MalI	GATC	3 cut(s)	63, 217, 558
MboI	GATC	3 cut(s)	61, 215, 556
MboII	GAAGA	4 cut(s)	119, 242, 661, 685
MfeI	CAATTG	2 cut(s)	264, 560
MflI	RGATCY	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	7 cut(s)	237, 264, 366, 501, 533, 560, 714
MluNI	TGGCCA	1 cut(s)	281
MnlI	CCTC	8 cut(s)	79, 359, 370, 404, 627, 646, 677, 710
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	156, 500, 713
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	2 cut(s)	264, 560
Mva1269I	GAATGC	2 cut(s)	246, 420
MvaI	CCWGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	61, 215, 556
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	5 cut(s)	96, 128, 245, 298, 385
NlaIV	GGNNCC	1 cut(s)	387
PctI	GAATGC	2 cut(s)	246, 420
PfeI	GAWTC	4 cut(s)	14, 46, 298, 437
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	164, 258, 585, 678
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	170, 428
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	156, 500, 713
SatI	GCNGC	4 cut(s)	163, 257, 584, 677
Sau3AI	GATC	3 cut(s)	61, 215, 556
Sau96I	GGNCC	2 cut(s)	170, 428
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	8 cut(s)	90, 308, 376, 424, 430, 543, 601, 632
SinI	GGWCC	2 cut(s)	170, 428
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	7 cut(s)	237, 264, 366, 501, 533, 560, 714
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	69, 174, 195, 419
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	194, 381
TasI	AATT	7 cut(s)	237, 264, 366, 501, 533, 560, 714
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	4 cut(s)	14, 46, 298, 437
Tru1I	TTAA	3 cut(s)	156, 500, 713
Tru9I	TTAA	3 cut(s)	156, 500, 713
TseI	GCWGC	3 cut(s)	162, 583, 676
TspDTI	ATGAA	3 cut(s)	69, 230, 333
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	170, 428
XmaJI	CCTAGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	4 cut(s)	69, 174, 195, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.