Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000568.1

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Forward (+)

24278 .. 25693

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000568.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

atgaattatagccacaaacagaggtcgatagcgatggaaaacatacttgcttcattccaaggaactctaaaagaagaagtgctaagtgcagtagtgcctttattaatgttcctgtctatgggtctgattggcttagttcttgcccacccaaagtaccaactagtccccagagctactttcacatttctaagcaagctggtctttgttgtcttcttgccctgcttgatcttcacatatcttggcccaacagtcactctcaaaaacttgctgctctggtggttcattcctgtaaatgttgttctaagtaccgccattggctgcgtattggggttgctggtggcgctaatctgtaggcctccccgcgactactttcgattcaccataataatgactgcgtttggaaacacaggtaatctgccccttgcaattgttacctctatttgtcaaagtgatgataaccctttcggttctgattgttacgactatggtgtgtcatatgtatcattttcccaatgggtttctgttgttctcgtttacacacttgtttaccatatgatggagcccccattaagggatcaaagtctactcgttgaggaagaagaagatgatgaagatgagatatttgaggaaattatgtctggtccaaattatgaagatgaaaatcatctgagtaggcctcttcttgttgaggctgaatggcctggaattgaagataaagaaactgagcactgtaagacaccctttattgcaagactttttactactagaagctcctctgctcgaatttcagtctcaactattccagatgtaatcggctcaactgaagaagagggaacatccaactacagttccaagtgtttggctgagcctagaatggtaaggaagttcagatcagtagtggggatgacaccaattcattacattcttcagcccccaacaattgcttccctcttggctataatcattgggatggtccccacgttgaaatcaattgtttacgatgacgatgcagttctttcatttattacagacagcttagaaattctatccgaggctatggtgccttcagctatgcttgttctcggaggatcgcttgctcaaggaccaaatgaatccaatctcggggttcgaactacagttgggattattattgcaagactttttatacttcctttgattggaattggtgtcattcatttggccgataaatggaatattctaatagccggagatcaaatgttccggttggtacttttgctgcagtacacaatgccaagtgccatcttgttaggagcaattgcaagcttgaggggttatgcagttaaggaggcttcagcactgctcttctggcagcatgttgttgctgttttgtccatttcattctatataattgtctacttctatatcttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

471

Amino Acids

52.36

Weight (kDa)

4.94

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1060
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	2 cut(s)	583, 1395
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	309, 361
AclWI	GGATC	2 cut(s)	582, 1096
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	2 cut(s)	783, 1041
AcuI	CTGAAG	4 cut(s)	843, 911, 1050, 1317
AfaI	GTAC	4 cut(s)	155, 307, 1251, 1265
AfiI	CCNNNNNNNGG	7 cut(s)	118, 556, 570, 571, 1122, 1178, 1209
AgsI	TTSAA	2 cut(s)	710, 985
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	700
AjuI	GAANNNNNNNTTGG	2 cut(s)	928, 960
AluBI	AGCT	6 cut(s)	173, 196, 771, 1035, 1070, 1305
AluI	AGCT	6 cut(s)	173, 196, 771, 1035, 1070, 1305
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	796
AlwI	GGATC	2 cut(s)	582, 1096
Ama87I	CYCGRG	1 cut(s)	1121
AoxI	GGCC	5 cut(s)	241, 353, 674, 698, 1200
ApeKI	GCWGC	4 cut(s)	268, 318, 1258, 1351
ApoI	RAATTY	2 cut(s)	783, 1041
AseI	ATTAAT	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	4 cut(s)	242, 641, 973, 1103
AsuHPI	GGTGA	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	1129
AvaI	CYCGRG	1 cut(s)	1121
AvaII	GGWCC	3 cut(s)	641, 973, 1103
BanI	GGYRCC	1 cut(s)	1060
BanII	GRGCYC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	4 cut(s)	255, 305, 1245, 1363
BccI	CCATC	4 cut(s)	28, 550, 964, 1289
BcgI	CGANNNNNNTGC	2 cut(s)	989, 1023
BciT130I	CCWGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	796
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 765, 870
BfmI	CTRYAG	4 cut(s)	349, 844, 1134, 1259
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	4 cut(s)	269, 319, 1259, 1352
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	4 cut(s)	270, 320, 1260, 1353
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	3 cut(s)	641, 973, 1103
BmeT110I	CYCGRG	1 cut(s)	1121
BmgT120I	GGNCC	4 cut(s)	242, 641, 973, 1103
BmiI	GGNNCC	3 cut(s)	561, 975, 1062
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	1 cut(s)	997
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
Bpu1102I	GCTNAGC	1 cut(s)	864
Bpu14I	TTCGAA	1 cut(s)	1129
BpuEI	CTTGAG	2 cut(s)	1083, 1327
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	2 cut(s)	58, 1050
BsaWI	WCCGGW	1 cut(s)	1242
Bsc4I	CCNNNNNNNGG	7 cut(s)	118, 556, 570, 571, 1122, 1178, 1209
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	2 cut(s)	58, 1050
BseGI	GGATG	3 cut(s)	836, 909, 975
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	7 cut(s)	118, 556, 570, 571, 1122, 1178, 1209
BseMII	CTCAG	3 cut(s)	659, 714, 855
BseRI	GAGGAG	1 cut(s)	763
BseXI	GCAGC	4 cut(s)	255, 305, 1245, 1363
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	5 cut(s)	243, 355, 676, 700, 1202
BshNI	GGYRCC	1 cut(s)	1060
BsiHKAI	GWGCWC	1 cut(s)	729
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	2 cut(s)	1227, 1243
BslFI	GGGAC	2 cut(s)	149, 959
BslI	CCNNNNNNNGG	7 cut(s)	118, 556, 570, 571, 1122, 1178, 1209
BsmAI	GTCTC	1 cut(s)	796
BsmFI	GGGAC	2 cut(s)	149, 959
BsnI	GGCC	5 cut(s)	243, 355, 676, 700, 1202
BsoBI	CYCGRG	1 cut(s)	1121
Bsp119I	TTCGAA	1 cut(s)	1129
Bsp1286I	GDGCHC	2 cut(s)	564, 729
Bsp143I	GATC	5 cut(s)	225, 574, 890, 1088, 1231
Bsp1720I	GCTNAGC	1 cut(s)	864
BspACI	CCGC	2 cut(s)	309, 361
BspANI	GGCC	5 cut(s)	243, 355, 676, 700, 1202
BspCNI	CTCAG	3 cut(s)	660, 715, 856
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	561, 975, 1062
BspMAI	CTGCAG	1 cut(s)	1263
BspPI	GGATC	2 cut(s)	582, 1096
BspQI	GCTCTTC	1 cut(s)	1349
BspT104I	TTCGAA	1 cut(s)	1129
BspT107I	GGYRCC	1 cut(s)	1060
BssECI	CCNNGG	2 cut(s)	58, 1050
BssMI	GATC	5 cut(s)	225, 574, 890, 1088, 1231
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	4 cut(s)	250, 731, 848, 1138
Bst6I	CTCTTC	3 cut(s)	684, 822, 1349
BstBI	TTCGAA	1 cut(s)	1129
BstC8I	GCNNGC	3 cut(s)	194, 1095, 1303
BstDEI	CTNAG	8 cut(s)	83, 133, 188, 302, 668, 723, 864, 1036
BstF5I	GGATG	3 cut(s)	836, 909, 975
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	5 cut(s)	228, 577, 893, 1091, 1234
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	5 cut(s)	225, 574, 890, 1088, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 1348
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	1358
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	4 cut(s)	349, 844, 1134, 1259
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	4 cut(s)	255, 305, 1245, 1363
BstV2I	GAAGAC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	859
BsuRI	GGCC	5 cut(s)	243, 355, 676, 700, 1202
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	836, 909, 975
BtsI	GCAGTG	1 cut(s)	1337
BtsIMutI	CAGTG	2 cut(s)	727, 1337
Cac8I	GCNNGC	3 cut(s)	194, 1095, 1303
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	4 cut(s)	242, 641, 973, 1103
Csp6I	GTAC	4 cut(s)	154, 306, 1250, 1264
CviAII	CATG	1 cut(s)	1355
CviQI	GTAC	4 cut(s)	154, 306, 1250, 1264
DdeI	CTNAG	8 cut(s)	83, 133, 188, 302, 668, 723, 864, 1036
DpnI	GATC	5 cut(s)	227, 576, 892, 1090, 1233
DpnII	GATC	5 cut(s)	225, 574, 890, 1088, 1231
EaeI	YGGCCR	1 cut(s)	1200
Eam1104I	CTCTTC	3 cut(s)	684, 822, 1349
EarI	CTCTTC	3 cut(s)	684, 822, 1349
Eco130I	CCWWGG	1 cut(s)	58
Eco147I	AGGCCT	2 cut(s)	355, 676
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	3 cut(s)	641, 973, 1103
Eco57I	CTGAAG	4 cut(s)	843, 911, 1050, 1317
Eco88I	CYCGRG	1 cut(s)	1121
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	1358
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 725, 757
FaqI	GGGAC	2 cut(s)	149, 959
FatI	CATG	1 cut(s)	1354
FauI	CCCGC	1 cut(s)	368
FauNDI	CATATG	2 cut(s)	496, 552
FblI	GTMKAC	2 cut(s)	583, 1395
Fnu4HI	GCNGC	4 cut(s)	269, 319, 1259, 1352
FokI	GGATG	3 cut(s)	823, 916, 982
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	4 cut(s)	269, 319, 1259, 1352
FspBI	CTAG	3 cut(s)	161, 765, 870
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	4 cut(s)	269, 319, 1259, 1352
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	5 cut(s)	243, 355, 676, 700, 1202
HapII	CCGG	2 cut(s)	1227, 1243
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	1358
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	1303
HinfI	GANTC	2 cut(s)	375, 1112
HpaII	CCGG	2 cut(s)	1227, 1243
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	6 cut(s)	535, 547, 584, 997, 1266, 1396
Hpy188I	TCNGA	6 cut(s)	126, 472, 669, 890, 1051, 1085
Hpy188III	TCNNGA	1 cut(s)	803
Hpy8I	GTNNAC	6 cut(s)	535, 547, 584, 997, 1266, 1396
HpyAV	CCTTC	1 cut(s)	1074
HpyCH4III	ACNGT	4 cut(s)	250, 731, 848, 1138
HpyCH4IV	ACGT	1 cut(s)	980
HpyCH4V	TGCA	8 cut(s)	89, 425, 749, 1010, 1154, 1261, 1301, 1319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 1348
HpyF3I	CTNAG	8 cut(s)	83, 133, 188, 302, 668, 723, 864, 1036
HpySE526I	ACGT	1 cut(s)	980
Hsp92II	CATG	1 cut(s)	1358
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	5 cut(s)	225, 574, 890, 1088, 1231
LguI	GCTCTTC	1 cut(s)	1349
LmnI	GCTCC	3 cut(s)	559, 776, 1292
Lsp1109I	GCAGC	4 cut(s)	255, 305, 1245, 1363
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	3 cut(s)	161, 765, 870
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	3 cut(s)	250, 430, 476
MalI	GATC	5 cut(s)	227, 576, 892, 1090, 1233
MboI	GATC	5 cut(s)	225, 574, 890, 1088, 1231
MfeI	CAATTG	4 cut(s)	426, 939, 990, 1296
MhlI	GDGCHC	2 cut(s)	564, 729
MmeI	TCCRAC	1 cut(s)	864
MseI	TTAA	3 cut(s)	104, 569, 1323
MslI	CAYNNNNRTG	2 cut(s)	386, 968
MspI	CCGG	2 cut(s)	1227, 1243
MspR9I	CCNGG	1 cut(s)	702
MunI	CAATTG	4 cut(s)	426, 939, 990, 1296
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	340, 1348
NdeI	CATATG	2 cut(s)	496, 552
NdeII	GATC	5 cut(s)	225, 574, 890, 1088, 1231
NlaIII	CATG	1 cut(s)	1358
NlaIV	GGNNCC	3 cut(s)	561, 975, 1062
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	1358
NspV	TTCGAA	1 cut(s)	1129
PceI	AGGCCT	2 cut(s)	355, 676
PciSI	GCTCTTC	1 cut(s)	1349
PfeI	GAWTC	2 cut(s)	375, 1112
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	270, 320, 1260, 1353
PshBI	ATTAAT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	3 cut(s)	561, 975, 1062
PspPI	GGNCC	4 cut(s)	242, 641, 973, 1103
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
PstI	CTGCAG	1 cut(s)	1263
RsaI	GTAC	4 cut(s)	155, 307, 1251, 1265
RsaNI	GTAC	4 cut(s)	154, 306, 1250, 1264
RseI	CAYNNNNRTG	2 cut(s)	386, 968
SapI	GCTCTTC	1 cut(s)	1349
SaqAI	TTAA	3 cut(s)	104, 569, 1323
SatI	GCNGC	4 cut(s)	269, 319, 1259, 1352
Sau3AI	GATC	5 cut(s)	225, 574, 890, 1088, 1231
Sau96I	GGNCC	4 cut(s)	242, 641, 973, 1103
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	2 cut(s)	564, 729
SfaNI	GCATC	1 cut(s)	997
SfcI	CTRYAG	4 cut(s)	349, 844, 1134, 1259
SfuI	TTCGAA	1 cut(s)	1129
SinI	GGWCC	3 cut(s)	641, 973, 1103
SmiMI	CAYNNNNRTG	2 cut(s)	386, 968
SmlI	CTYRAG	2 cut(s)	1098, 1306
SmoI	CTYRAG	2 cut(s)	1098, 1306
SpeI	ACTAGT	1 cut(s)	160
SseBI	AGGCCT	2 cut(s)	355, 676
SsiI	CCGC	2 cut(s)	309, 361
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	3 cut(s)	161, 765, 870
StuI	AGGCCT	2 cut(s)	355, 676
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	4 cut(s)	250, 731, 848, 1138
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	4 cut(s)	26, 373, 781, 1129
TatI	WGTACW	1 cut(s)	1263
TfiI	GAWTC	2 cut(s)	375, 1112
Tru1I	TTAA	3 cut(s)	104, 569, 1323
Tru9I	TTAA	3 cut(s)	104, 569, 1323
TscAI	CASTG	2 cut(s)	734, 1344
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	4 cut(s)	268, 318, 1258, 1351
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	2 cut(s)	734, 1344
Van91I	CCANNNNNTGG	1 cut(s)	556
VpaK11BI	GGWCC	3 cut(s)	641, 973, 1103
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	2 cut(s)	783, 1041
XceI	RCATGY	1 cut(s)	1358
XmiI	GTMKAC	2 cut(s)	583, 1395
XspI	CTAG	3 cut(s)	161, 765, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.