Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

16559068 .. 16561270

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G151300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGATTTTTTCCTTGCTTCAATGCACGGAAACACTCTCAAAGGAGGTTTGCTCCTAAGTGCAGTACTGCCTTTATTGAAGCTCCTTTGTATGGCTGCCATTGGTTTACTTCTTGCTCACCCAAAATACCAACTTGTCCCAAAAGCCACTTTCACATTTCTCAGTAAGCTGGTGTTTGCCGTCTTTTTGCCCTGCTTGATCTTCACCAATCTTGGTCCATCCATCACCTTAAAGAACTTGCTGAATTGGTGGTTCATTCCTGTAAATGTTGTTATAAGTACCACAATTGGGTGTGTTTTGGGGGTTTTGGTAGCAATAATTTGCAGGCCACCACCTGAATTTTTTAGATTTACCATAATCATGACTGCATTTGGAAACACAGGCAATCTCCCTCTTGCAATTGTGGCCTCTGTTTGCCACAGTGATGATAACCCTTTTGGTACTGAAGATGACTGCACTGAGGCTGGTGTGGCATATGTATCTTTTTCCCAATGGGTTTCTGTTATTCTTGTTTATACACTTGTTTATCACATGATGGAGCCCACCTTGGAATCTAGTAGAAGTGCCTATGAAGTTGTTGTTGAGGAAGAGGAGTATCGTGAGATTGAGGAATTGGGGTCTAATGGCAATGGCAATGGCAACGGCAATGAAAATGGAAATGAAAATGATCTCACTAGGCCACTTCTTGTTGAGGCTGAATGGCCTGGAATGGAAGATAAGGAAATTGAGCATTGCAAGACACCCTTTATTGCAAGACTTTTTAATAGCAGCAATTCTATACTTTCCCACACCGCTCTTCCGGATTTAGGCGGCGAGGAGGAGAAGGAGAAGAAGGGAGGTCAGCCAAGAAGTACCAAGTGTCTGGCAGAGCCTATAATGGTGAGGAAAATCAGGTCTGTTGCTGGGATGACACCAATTCATGGCATTCTTCAGCCCCCAACAATTGCTTCTCTTTTGGCAATTATCATTGGCATGATTCCTAAGTTGAAATCTTGGGTTTTTGATGATGATCAAATCCTTTCATTCATCACAGACAGCTTGGAAATTCTAGCTGAGGCCATGGTGCCTTCGGCTGTGCTTGTTCTTGGAGGCATGCTGGCTGAAGGTCCAAACGAATCAAATCTAGGAATGAGAACTACAATTGGGATTATTGTTGCAAGGCTTTTGGTACTTCCTTTGATTGGAATTGGTGTGATTCTATTGTCTGATAAATTGAACATTTTGATTGATGATGATCCATTGTACCGGTTCGTTCTTTTGCTGCAATACACCACACCAAGTGCTATCTTGTTAGGAGCAGTTGCAAGCTTGAGGGGTTATGCAGTCAGAGAGGCTTCTGCACTCCTCTTCTGGCAGCATATTGTTGCTGTCTTCTCCCTTTCAGTCTATATAATTGTATACTTCTACATATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

473

Amino Acids

51.67

Weight (kDa)

4.97

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	1063
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	1398
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	2 cut(s)	792, 810
AclWI	GGATC	1 cut(s)	1229
AcsI	RAATTY	2 cut(s)	338, 1044
AcuI	CTGAAG	3 cut(s)	465, 914, 1122
AdeI	CACNNNGTG	1 cut(s)	1280
AfaI	GTAC	6 cut(s)	66, 280, 442, 853, 1170, 1244
AfiI	CCNNNNNNNGG	5 cut(s)	91, 288, 806, 920, 1181
AgeI	ACCGGT	1 cut(s)	1245
AgsI	TTSAA	4 cut(s)	21, 79, 988, 1216
AjnI	CCWGG	1 cut(s)	703
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
AluBI	AGCT	5 cut(s)	82, 169, 1038, 1052, 1308
AluI	AGCT	5 cut(s)	82, 169, 1038, 1052, 1308
AlwI	GGATC	1 cut(s)	1229
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	5 cut(s)	326, 405, 677, 701, 1056
ApeKI	GCWGC	4 cut(s)	95, 768, 1261, 1354
ApoI	RAATTY	2 cut(s)	338, 1044
AsiGI	ACCGGT	1 cut(s)	1245
AspS9I	GGNCC	2 cut(s)	215, 1106
AsuHPI	GGTGA	4 cut(s)	110, 196, 217, 892
AvaII	GGWCC	2 cut(s)	215, 1106
BanI	GGYRCC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	1363
BbvCI	CCTCAGC	1 cut(s)	1053
BbvI	GCAGC	4 cut(s)	82, 780, 1248, 1366
BccI	CCATC	3 cut(s)	226, 230, 529
BceAI	ACGGC	2 cut(s)	164, 658
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	1009
BfaI	CTAG	4 cut(s)	555, 675, 1049, 1124
BisI	GCNGC	5 cut(s)	96, 769, 811, 1262, 1355
BlsI	GCNGC	5 cut(s)	97, 770, 812, 1263, 1356
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	215, 1106
BmgT120I	GGNCC	2 cut(s)	215, 1106
BmiI	GGNNCC	2 cut(s)	540, 1065
BmrFI	CCNGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	1363
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
Bpu10I	CCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	1 cut(s)	1330
BsaBI	GATNNNNATC	2 cut(s)	1008, 1233
BsaJI	CCNNGG	2 cut(s)	546, 1059
BsaWI	WCCGGW	2 cut(s)	799, 1245
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 288, 806, 920, 1181
Bse118I	RCCGGY	1 cut(s)	1245
Bse3DI	GCAATG	4 cut(s)	634, 640, 652, 730
Bse8I	GATNNNNATC	2 cut(s)	1008, 1233
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	546, 1059
BseGI	GGATG	2 cut(s)	218, 912
BseJI	GATNNNNATC	2 cut(s)	1008, 1233
BseLI	CCNNNNNNNGG	5 cut(s)	91, 288, 806, 920, 1181
BseMI	GCAATG	4 cut(s)	634, 640, 652, 730
BseMII	CTCAG	3 cut(s)	175, 450, 1044
BseRI	GAGGAG	4 cut(s)	605, 830, 833, 1334
BseXI	GCAGC	4 cut(s)	82, 780, 1248, 1366
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	3 cut(s)	81, 439, 1323
BshFI	GGCC	5 cut(s)	328, 407, 679, 703, 1058
BshNI	GGYRCC	1 cut(s)	1063
BshTI	ACCGGT	1 cut(s)	1245
BsiSI	CCGG	2 cut(s)	800, 1246
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	5 cut(s)	91, 288, 806, 920, 1181
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	5 cut(s)	328, 407, 679, 703, 1058
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp13I	TCCGGA	1 cut(s)	799
Bsp143I	GATC	4 cut(s)	198, 667, 1009, 1234
Bsp19I	CCATGG	1 cut(s)	1059
BspACI	CCGC	2 cut(s)	792, 810
BspANI	GGCC	5 cut(s)	328, 407, 679, 703, 1058
BspCNI	CTCAG	3 cut(s)	174, 451, 1045
BspEI	TCCGGA	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	540, 1065
BspPI	GGATC	1 cut(s)	1229
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	1063
BsrBI	CCGCTC	1 cut(s)	794
BsrDI	GCAATG	4 cut(s)	634, 640, 652, 730
BsrFI	RCCGGY	1 cut(s)	1245
BssAI	RCCGGY	1 cut(s)	1245
BssECI	CCNNGG	2 cut(s)	546, 1059
BssMI	GATC	4 cut(s)	198, 667, 1009, 1234
BssNAI	GTATAC	1 cut(s)	1399
BssT1I	CCWWGG	2 cut(s)	546, 1059
Bst1107I	GTATAC	1 cut(s)	1399
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	3 cut(s)	582, 801, 1352
BstC8I	GCNNGC	4 cut(s)	326, 1094, 1098, 1306
BstDEI	CTNAG	5 cut(s)	56, 161, 459, 981, 1053
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	2 cut(s)	218, 912
BstKTI	GATC	4 cut(s)	201, 670, 1012, 1237
BstMBI	GATC	4 cut(s)	198, 667, 1009, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 470
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	1 cut(s)	703
BstV1I	GCAGC	4 cut(s)	82, 780, 1248, 1366
BstV2I	GAAGAC	1 cut(s)	1363
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstZ17I	GTATAC	1 cut(s)	1399
BsuRI	GGCC	5 cut(s)	328, 407, 679, 703, 1058
BtgI	CCRYGG	1 cut(s)	1059
BtsCI	GGATG	2 cut(s)	218, 912
BtsIMutI	CAGTG	2 cut(s)	427, 456
Cac8I	GCNNGC	4 cut(s)	326, 1094, 1098, 1306
CciI	TCATGA	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	1245
Cfr13I	GGNCC	2 cut(s)	215, 1106
Csp6I	GTAC	6 cut(s)	65, 279, 441, 852, 1169, 1243
CspAI	ACCGGT	1 cut(s)	1245
CviAII	CATG	6 cut(s)	361, 532, 920, 973, 1060, 1093
CviQI	GTAC	6 cut(s)	65, 279, 441, 852, 1169, 1243
DdeI	CTNAG	5 cut(s)	56, 161, 459, 981, 1053
DpnI	GATC	4 cut(s)	200, 669, 1011, 1236
DpnII	GATC	4 cut(s)	198, 667, 1009, 1234
DraIII	CACNNNGTG	1 cut(s)	1280
Eam1104I	CTCTTC	3 cut(s)	582, 801, 1352
EarI	CTCTTC	3 cut(s)	582, 801, 1352
Eco130I	CCWWGG	2 cut(s)	546, 1059
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	215, 1106
Eco57I	CTGAAG	3 cut(s)	465, 914, 1122
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	546, 1059
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	2 cut(s)	546, 1059
FaeI	CATG	6 cut(s)	364, 535, 923, 976, 1063, 1096
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	6 cut(s)	360, 531, 919, 972, 1059, 1092
FauNDI	CATATG	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	1398
Fnu4HI	GCNGC	5 cut(s)	96, 769, 811, 1262, 1355
FokI	GGATG	2 cut(s)	205, 919
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	5 cut(s)	96, 769, 811, 1262, 1355
FspBI	CTAG	4 cut(s)	555, 675, 1049, 1124
GluI	GCNGC	5 cut(s)	96, 769, 811, 1262, 1355
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	5 cut(s)	328, 407, 679, 703, 1058
HapII	CCGG	2 cut(s)	800, 1246
Hin1II	CATG	6 cut(s)	364, 535, 923, 976, 1063, 1096
HindIII	AAGCTT	1 cut(s)	1306
HinfI	GANTC	4 cut(s)	551, 976, 1115, 1195
HpaII	CCGG	2 cut(s)	800, 1246
HphI	GGTGA	4 cut(s)	110, 196, 217, 892
Hpy166II	GTNNAC	2 cut(s)	107, 1399
Hpy188I	TCNGA	2 cut(s)	1207, 1328
Hpy188III	TCNNGA	3 cut(s)	361, 599, 800
Hpy8I	GTNNAC	2 cut(s)	107, 1399
HpyAV	CCTTC	4 cut(s)	817, 826, 1077, 1097
HpyCH4III	ACNGT	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 470
HpyF3I	CTNAG	5 cut(s)	56, 161, 459, 981, 1053
Hsp92II	CATG	6 cut(s)	364, 535, 923, 976, 1063, 1096
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	198, 667, 1009, 1234
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	4 cut(s)	57, 87, 538, 1295
Lsp1109I	GCAGC	4 cut(s)	82, 780, 1248, 1366
MaeI	CTAG	4 cut(s)	555, 675, 1049, 1124
MalI	GATC	4 cut(s)	200, 669, 1011, 1236
MbiI	CCGCTC	1 cut(s)	794
MboI	GATC	4 cut(s)	198, 667, 1009, 1234
MboII	GAAGA	9 cut(s)	193, 458, 599, 725, 788, 841, 920, 1339, 1363
MfeI	CAATTG	4 cut(s)	285, 399, 942, 1140
MhlI	GDGCHC	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	2 cut(s)	230, 762
MslI	CAYNNNNRTG	3 cut(s)	359, 423, 971
MspI	CCGG	2 cut(s)	800, 1246
MspR9I	CCNGG	1 cut(s)	705
MunI	CAATTG	4 cut(s)	285, 399, 942, 1140
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	2 cut(s)	404, 470
NcoI	CCATGG	1 cut(s)	1059
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	4 cut(s)	198, 667, 1009, 1234
NlaIII	CATG	6 cut(s)	364, 535, 923, 976, 1063, 1096
NlaIV	GGNNCC	2 cut(s)	540, 1065
NspI	RCATGY	1 cut(s)	1096
PaeI	GCATGC	1 cut(s)	1096
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	801
PctI	GAATGC	1 cut(s)	924
PfeI	GAWTC	4 cut(s)	551, 976, 1115, 1195
PflMI	CCANNNNNTGG	1 cut(s)	920
PinAI	ACCGGT	1 cut(s)	1245
PkrI	GCNGC	5 cut(s)	97, 770, 812, 1263, 1356
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	540, 1065
PspPI	GGNCC	2 cut(s)	215, 1106
RsaI	GTAC	6 cut(s)	66, 280, 442, 853, 1170, 1244
RsaNI	GTAC	6 cut(s)	65, 279, 441, 852, 1169, 1243
RseI	CAYNNNNRTG	3 cut(s)	359, 423, 971
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	230, 762
SatI	GCNGC	5 cut(s)	96, 769, 811, 1262, 1355
Sau3AI	GATC	4 cut(s)	198, 667, 1009, 1234
Sau96I	GGNCC	2 cut(s)	215, 1106
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	543
SinI	GGWCC	2 cut(s)	215, 1106
SmiMI	CAYNNNNRTG	3 cut(s)	359, 423, 971
SmlI	CTYRAG	1 cut(s)	1309
SmoI	CTYRAG	1 cut(s)	1309
SphI	GCATGC	1 cut(s)	1096
SsiI	CCGC	2 cut(s)	792, 810
SspMI	CTAG	4 cut(s)	555, 675, 1049, 1124
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	546, 1059
TaaI	ACNGT	1 cut(s)	422
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	813
TfiI	GAWTC	4 cut(s)	551, 976, 1115, 1195
Tru1I	TTAA	2 cut(s)	230, 762
Tru9I	TTAA	2 cut(s)	230, 762
TscAI	CASTG	2 cut(s)	427, 463
TseI	GCWGC	4 cut(s)	95, 768, 1261, 1354
TspDTI	ATGAA	7 cut(s)	244, 585, 663, 675, 908, 1011, 1015
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	427, 463
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	215, 1106
XapI	RAATTY	2 cut(s)	338, 1044
XceI	RCATGY	1 cut(s)	1096
XmiI	GTMKAC	1 cut(s)	1398
XspI	CTAG	4 cut(s)	555, 675, 1049, 1124
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.