Rroxscaffold_6G00391430

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002715
Physical Location & Seq
Reverse (-)
9485379 .. 9487112
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391430.1

Sequence Viewer

Length: 1383 bp
ATGGAAAATATACTTGCTTCATTCCAAGGAACTCTAAAAGGAGAAGTGCTAAGTGCAGTAGTGCCTTTATTGATGTTCCTATCTATGGGTCTGATTGGCTTAGTTCTTGCCCACCCAAAGTACCAACTAGTCCCCAGAGCTACTTTCACATTTCTAAGCAAGCTGGTCTTTGTTGTCTTCTTGCCCTGCTTGATCTTCACATATCTTGGCCCAACAATCACTCTCAAAAACTTGCTGCTCTGGTGGTTCATTCCTGTAAATGTTGTTCTAAGTACCGCCATTGGCTGCGTATTGGGGTTGCTGGTGGCGCTAATCTGTAGGCCTCCCCGCGACTACTTTCGATTCACCATAATAATGACTGCGTTTGGAAACACAGGTAACCTGCCCCTTGCAATTGTTACCTCTATTTGTCAATGTGATGATAACCCTTTCGGTTCTGATTGTTACGACTATGGTGTGTCATATGTATCATTTTCCCAATGGGTTTCTGTTATTCTCGTTTACACACTTGTTTACCATATGATGGAGCCCCCATTACGGGATCAGAGTCTACTCGTTGAGGAAGAAGAAGATGATGAAGATGAGATATTTGAGGAAATGATGTCTGGTCCAAATTATGAAGATGAAAATCATCTGAGTAGGCCTCTTCTTGTTGAGGCTGAATGGCCTGGAATTGAAGATAAAGAAATTGAGCACTGTAAGACACCCTTTATTGCAAGACTTTTTACTACTAGAAGCTCCTCTGCTCGACTTTCAGTCTCAACTATTCCAGATGTAATCGGCTCAACTGAAGAAGAGGGAACATCCACCTACAGTTCCCAGTGTTTGACTGAGCCTAGAATGGTAAGGAAGTTCAGATCAGTAGTGGGGATGACACCAATTCATTACATTCTTCAGCCCCCAACAATAGCTTCTCTCTTGGCTATTATCATTGGGATGGTTCCCACTTTGAAATCAATAGTTTACGATGACGATGCAGTTCTTTCATTTATTACAGACAGCTTAGAAATTCTATCCGAGGCTATGGTGCCTTCAGCTATGCTTGTTCTTGGAGGATCGCTTGCTCAAGGACCAAATGAATCCAATCTCGGAGTTCGAACTACAGTTGGGATTATTATTGCAAGACTTTTTATACTTCCTTTGATTGGAATTGGTGTCATTCATTTGGCCGATAAATGGAATATTCTGATAGCCGGAGATCAAATGTTCCGGTTGGTGCTTTTGCTGCAATACACAATGCCAAGTGCCATCTTGTTAGGAGCAATTGCAAGCTTGAGGGGTTATGCAATTAAGGAGGCTTCAGCACTGCTCTTCTGGCAGCATGTTGTTGCTGTTTTGTCCATTTCATTCTATATAATTGTCTATTTCTATATCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

460

Amino Acids

51.08

Weight (kDa)

4.77

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 20 - 452 3.5e-86 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 1027
AccB7I CCANNNNNTGG 1 cut(s) 523
AccI GTMKAC 1 cut(s) 550
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 276, 328
AclWI GGATC 2 cut(s) 549, 1063
AcoI YGGCCR 1 cut(s) 1167
AcsI RAATTY 1 cut(s) 1008
AcuI CTGAAG 4 cut(s) 810, 878, 1017, 1284
AfaI GTAC 2 cut(s) 122, 274
AfiI CCNNNNNNNGG 6 cut(s) 85, 523, 537, 538, 1145, 1176
AgsI TTSAA 2 cut(s) 677, 952
AhdI GACNNNNNGTC 1 cut(s) 755
AhlI ACTAGT 1 cut(s) 127
AjnI CCWGG 1 cut(s) 667
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AluBI AGCT 7 cut(s) 140, 163, 738, 911, 1002, 1037, 1272
AluI AGCT 7 cut(s) 140, 163, 738, 911, 1002, 1037, 1272
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 2 cut(s) 549, 1063
AoxI GGCC 5 cut(s) 208, 320, 641, 665, 1167
ApeKI GCWGC 4 cut(s) 235, 285, 1225, 1318
ApoI RAATTY 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 209, 608, 1070
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 1096
AvaII GGWCC 2 cut(s) 608, 1070
BanI GGYRCC 1 cut(s) 1027
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 222, 272, 1212, 1330
BccI CCATC 3 cut(s) 517, 931, 1256
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 763
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 3 cut(s) 128, 732, 837
BfmI CTRYAG 3 cut(s) 316, 811, 1101
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 236, 286, 1226, 1319
BlsI GCNGC 4 cut(s) 237, 287, 1227, 1320
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 2 cut(s) 608, 1070
BmeRI GACNNNNNGTC 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 209, 608, 1070
BmiI GGNNCC 3 cut(s) 528, 942, 1029
BmrFI CCNGG 1 cut(s) 669
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 1 cut(s) 964
BmuI ACTGGG 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 628, 660
Bpu14I TTCGAA 1 cut(s) 1096
BpuEI CTTGAG 2 cut(s) 1050, 1294
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 25, 1017
BsaWI WCCGGW 1 cut(s) 1209
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 523, 537, 538, 1145, 1176
Bse1I ACTGG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 25, 1017
BseGI GGATG 3 cut(s) 803, 876, 942
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 6 cut(s) 85, 523, 537, 538, 1145, 1176
BseMII CTCAG 2 cut(s) 626, 822
BseNI ACTGG 1 cut(s) 820
BseRI GAGGAG 1 cut(s) 730
BseXI GCAGC 4 cut(s) 222, 272, 1212, 1330
BsgI GTGCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 5 cut(s) 210, 322, 643, 667, 1169
BshNI GGYRCC 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 2 cut(s) 1194, 1210
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 6 cut(s) 85, 523, 537, 538, 1145, 1176
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 5 cut(s) 210, 322, 643, 667, 1169
Bsp119I TTCGAA 1 cut(s) 1096
Bsp1286I GDGCHC 2 cut(s) 531, 696
Bsp143I GATC 5 cut(s) 192, 541, 857, 1055, 1198
BspACI CCGC 2 cut(s) 276, 328
BspANI GGCC 5 cut(s) 210, 322, 643, 667, 1169
BspCNI CTCAG 2 cut(s) 627, 823
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 528, 942, 1029
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 2 cut(s) 549, 1063
BspQI GCTCTTC 1 cut(s) 1316
BspT104I TTCGAA 1 cut(s) 1096
BspT107I GGYRCC 1 cut(s) 1027
BsrI ACTGG 1 cut(s) 820
BssECI CCNNGG 2 cut(s) 25, 1017
BssMI GATC 5 cut(s) 192, 541, 857, 1055, 1198
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 3 cut(s) 698, 815, 1105
Bst6I CTCTTC 3 cut(s) 651, 789, 1316
BstBI TTCGAA 1 cut(s) 1096
BstC8I GCNNGC 3 cut(s) 161, 1062, 1270
BstDEI CTNAG 7 cut(s) 50, 100, 155, 269, 635, 831, 1003
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 3 cut(s) 803, 876, 942
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 195, 544, 860, 1058, 1201
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 5 cut(s) 192, 541, 857, 1055, 1198
BstMWI GCNNNNNNNGC 3 cut(s) 307, 1225, 1315
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 1 cut(s) 1325
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 667
BstSFI CTRYAG 3 cut(s) 316, 811, 1101
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 222, 272, 1212, 1330
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 5 cut(s) 210, 322, 643, 667, 1169
BtsCI GGATG 3 cut(s) 803, 876, 942
BtsI GCAGTG 1 cut(s) 1304
BtsIMutI CAGTG 3 cut(s) 694, 827, 1304
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 3 cut(s) 161, 1062, 1270
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 209, 608, 1070
Csp6I GTAC 2 cut(s) 121, 273
CviAII CATG 1 cut(s) 1322
CviQI GTAC 2 cut(s) 121, 273
DdeI CTNAG 7 cut(s) 50, 100, 155, 269, 635, 831, 1003
DpnI GATC 5 cut(s) 194, 543, 859, 1057, 1200
DpnII GATC 5 cut(s) 192, 541, 857, 1055, 1198
DriI GACNNNNNGTC 1 cut(s) 755
EaeI YGGCCR 1 cut(s) 1167
Eam1104I CTCTTC 3 cut(s) 651, 789, 1316
Eam1105I GACNNNNNGTC 1 cut(s) 755
EarI CTCTTC 3 cut(s) 651, 789, 1316
Eco130I CCWWGG 1 cut(s) 25
Eco147I AGGCCT 2 cut(s) 322, 643
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 608, 1070
Eco57I CTGAAG 4 cut(s) 810, 878, 1017, 1284
Eco91I GGTNACC 1 cut(s) 377
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 1325
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 692, 724
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 1321
FauI CCCGC 1 cut(s) 335
FauNDI CATATG 2 cut(s) 463, 519
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 236, 286, 1226, 1319
FokI GGATG 3 cut(s) 790, 883, 949
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 4 cut(s) 236, 286, 1226, 1319
FspBI CTAG 3 cut(s) 128, 732, 837
GlaI GCGC 1 cut(s) 309
GluI GCNGC 4 cut(s) 236, 286, 1226, 1319
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 5 cut(s) 210, 322, 643, 667, 1169
HapII CCGG 2 cut(s) 1194, 1210
HhaI GCGC 1 cut(s) 310
Hin1II CATG 1 cut(s) 1325
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 1270
HinfI GANTC 3 cut(s) 342, 547, 1079
HpaII CCGG 2 cut(s) 1194, 1210
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 4 cut(s) 502, 514, 551, 964
Hpy188I TCNGA 8 cut(s) 93, 439, 546, 636, 857, 1018, 1091, 1188
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 4 cut(s) 502, 514, 551, 964
HpyAV CCTTC 1 cut(s) 1041
HpyCH4III ACNGT 3 cut(s) 698, 815, 1105
HpyCH4V TGCA 8 cut(s) 56, 392, 716, 977, 1121, 1228, 1268, 1286
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 1225, 1315
HpyF3I CTNAG 7 cut(s) 50, 100, 155, 269, 635, 831, 1003
Hsp92II CATG 1 cut(s) 1325
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 5 cut(s) 192, 541, 857, 1055, 1198
LguI GCTCTTC 1 cut(s) 1316
LmnI GCTCC 3 cut(s) 526, 743, 1259
Lsp1109I GCAGC 4 cut(s) 222, 272, 1212, 1330
LweI GCATC 1 cut(s) 964
MaeI CTAG 3 cut(s) 128, 732, 837
MaeIII GTNAC 3 cut(s) 377, 397, 443
MalI GATC 5 cut(s) 194, 543, 859, 1057, 1200
MboI GATC 5 cut(s) 192, 541, 857, 1055, 1198
MfeI CAATTG 2 cut(s) 393, 1263
MhlI GDGCHC 2 cut(s) 531, 696
MlyI GAGTC 1 cut(s) 556
MseI TTAA 1 cut(s) 1290
MslI CAYNNNNRTG 2 cut(s) 353, 935
MspI CCGG 2 cut(s) 1194, 1210
MspR9I CCNGG 1 cut(s) 669
MunI CAATTG 2 cut(s) 393, 1263
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 307, 1225, 1315
NdeI CATATG 2 cut(s) 463, 519
NdeII GATC 5 cut(s) 192, 541, 857, 1055, 1198
NlaIII CATG 1 cut(s) 1325
NlaIV GGNNCC 3 cut(s) 528, 942, 1029
NspI RCATGY 1 cut(s) 1325
NspV TTCGAA 1 cut(s) 1096
PceI AGGCCT 2 cut(s) 322, 643
PciSI GCTCTTC 1 cut(s) 1316
PfeI GAWTC 2 cut(s) 342, 1079
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 4 cut(s) 237, 287, 1227, 1320
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 667
PspEI GGTNACC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 3 cut(s) 528, 942, 1029
PspPI GGNCC 3 cut(s) 209, 608, 1070
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
RsaI GTAC 2 cut(s) 122, 274
RsaNI GTAC 2 cut(s) 121, 273
RseI CAYNNNNRTG 2 cut(s) 353, 935
SapI GCTCTTC 1 cut(s) 1316
SaqAI TTAA 1 cut(s) 1290
SatI GCNGC 4 cut(s) 236, 286, 1226, 1319
Sau3AI GATC 5 cut(s) 192, 541, 857, 1055, 1198
Sau96I GGNCC 3 cut(s) 209, 608, 1070
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 2 cut(s) 531, 696
SfaNI GCATC 1 cut(s) 964
SfcI CTRYAG 3 cut(s) 316, 811, 1101
SfuI TTCGAA 1 cut(s) 1096
SinI GGWCC 2 cut(s) 608, 1070
SmiMI CAYNNNNRTG 2 cut(s) 353, 935
SmlI CTYRAG 2 cut(s) 1065, 1273
SmoI CTYRAG 2 cut(s) 1065, 1273
SpeI ACTAGT 1 cut(s) 127
SseBI AGGCCT 2 cut(s) 322, 643
SsiI CCGC 2 cut(s) 276, 328
SspI AATATT 1 cut(s) 1183
SspMI CTAG 3 cut(s) 128, 732, 837
StuI AGGCCT 2 cut(s) 322, 643
StyD4I CCNGG 1 cut(s) 667
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 698, 815, 1105
TaqI TCGA 3 cut(s) 340, 748, 1096
TfiI GAWTC 2 cut(s) 342, 1079
Tru1I TTAA 1 cut(s) 1290
Tru9I TTAA 1 cut(s) 1290
TscAI CASTG 3 cut(s) 701, 827, 1311
TseI GCWGC 4 cut(s) 235, 285, 1225, 1318
TspRI CASTG 3 cut(s) 701, 827, 1311
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 2 cut(s) 608, 1070
XapI RAATTY 1 cut(s) 1008
XceI RCATGY 1 cut(s) 1325
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 3 cut(s) 128, 732, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.