Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

60379791 .. 60383528

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG387400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGTCTCGGTATCTTGTTGAATTGGTTCGAGATCATTTGGAATCCACTGGGGACGTGATGAGTGCGATAATGCCTTTGATGAAACTCTTGTCCCTCACAATTATAGGACTGGTTCTCGCTTACCCAAAAACTCAAATCATACCGAGAGCTACCTTTAAGCTCCTCAGCAAGCTTGTTTTTGCCTTGTTCTTGCCCTGTCTAATCTTTACCGAACTAGGTGAATCCATTACGCTTGAAAACTTTGTTCAGTGGTGGTTTATTCCAGTTAATGTGTTGGTGAGTACACTTGTTGGTTGTTTCCTTGGGTACTTGGTGGTGATTATATGTCATCCGCCCCCAGAGTTGAACAGATTTACTATTATCATGACTGCATTTGGGAATACAGGAAATCTCCCGCTTGCTCTTGTTGGATCTGTTTGTCATACTGAGAAAAATCCATTTGGACCTCATTGTCACTCGAGAGGGGTGGCTTATGTCTCTTTTGCTCAATGGGTTGCTGTAATTCTTGTTTATACCTTTGTCTATCATATGATGGAGCCACCATTGGAGTATTATGAGGTTGTTGAGGAAGGGACTGAGGGGACTGAGATTGAGGAGTTGAAAGATAACATAGGTAACGATCTCAGTAGGCCTTTACTTGTGGAAGCTGAATGGCCTGGTATGGAAGAAAAGGAAACTGAGCATTCCAAGACACCCTTTATTGCTAGGGTTTTCAACAGCATCTCAAGTGTTTCGCAGACTGGTATTCCAGATGGTGATCTCTCTGTGGAAAGCGGTGGAAACAGTCCCAGGTCCATTAGGTGTTTGGCTGAACCAAGGGTGGTTAGGAGGATCAGAATTGTTGCCGAACAAACTCCAATACGTCACATACTTCAACCCCCAACGATTGCTTCACTGTTTGCTATCATTATTGGGACAGTGCCTCAGTTGAAAGCTTTTGTCTTCGGATATGATGCTCCACTATCCTTCCTCACAGATAGTTTAGAGATTTTAGCTGGTGCTACGGTGCCTTCTGTGATGCTTATTCTTGGGGGTATGCTTGCAGAGGGACCAAATGATTCTAAACTTGGCCTTCGAACTACCATCGGTATATCAGTGGCAAGGCTCTTAGTGCTTCCTCTGGTGGGGATCTGTATTGTAGCGTTGGCCGATAAGCTTGATTTTCTGGTTGATGACGATACAATGTATAGGTTTGTACTTCTGCTGCAGTACACGACCCCAAGCGCAATTTTATTGGGAGCAATTGCCAGTTTGAGAGGATATGCAGTTAGTGAGGCATCAGCACTCATCTTCTGGCAGCATGTGTTTGCTCTCTTCTCCCTTTCCTTGTATATTGTCATCTACTTCAAACTAATACCACACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

455

Amino Acids

50.22

Weight (kDa)

5.34

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	22 - 445	5.9e-94	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	1006
AciI	CCGC	3 cut(s)	332, 395, 774
AclWI	GGATC	3 cut(s)	418, 839, 1136
AcoI	YGGCCR	1 cut(s)	1146
AfaI	GTAC	4 cut(s)	283, 308, 1197, 1211
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AgsI	TTSAA	8 cut(s)	20, 236, 346, 601, 715, 875, 931, 1348
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	655, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	874, 906
AluBI	AGCT	7 cut(s)	149, 160, 172, 647, 935, 995, 1156
AluI	AGCT	7 cut(s)	149, 160, 172, 647, 935, 995, 1156
Alw26I	GTCTC	2 cut(s)	9, 481
AlwI	GGATC	3 cut(s)	418, 839, 1136
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	629, 653, 1069, 1146
ApeKI	GCWGC	2 cut(s)	1204, 1297
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	1226
AspS9I	GGNCC	3 cut(s)	443, 792, 1049
AsuHPI	GGTGA	4 cut(s)	230, 289, 328, 767
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	443, 792, 1049
BanI	GGYRCC	1 cut(s)	1006
BbsI	GAAGAC	1 cut(s)	934
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	1191, 1309
BccI	CCATC	3 cut(s)	526, 746, 1091
BciT130I	CCWGG	2 cut(s)	657, 790
BcoDI	GTCTC	2 cut(s)	9, 481
BfaI	CTAG	2 cut(s)	215, 705
BfmI	CTRYAG	1 cut(s)	1205
BisI	GCNGC	2 cut(s)	1205, 1298
BlsI	GCNGC	2 cut(s)	1206, 1299
Bme1390I	CCNGG	2 cut(s)	657, 790
Bme18I	GGWCC	3 cut(s)	443, 792, 1049
BmeT110I	CYCGRG	1 cut(s)	457
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	443, 792, 1049
BmiI	GGNNCC	3 cut(s)	537, 1008, 1050
BmrFI	CCNGG	2 cut(s)	657, 790
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	4 cut(s)	729, 943, 1008, 1286
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	934
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	301, 788, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse1I	ACTGG	5 cut(s)	52, 114, 263, 745, 1248
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	657, 790
BseDI	CCNNGG	3 cut(s)	301, 788, 815
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMII	CTCAG	7 cut(s)	178, 417, 567, 576, 637, 669, 938
BseNI	ACTGG	5 cut(s)	52, 114, 263, 745, 1248
BseRI	GAGGAG	2 cut(s)	152, 608
BseXI	GCAGC	2 cut(s)	1191, 1309
BshFI	GGCC	4 cut(s)	631, 655, 1071, 1148
BshNI	GGYRCC	1 cut(s)	1006
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	2 cut(s)	9, 481
BsmFI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	4 cut(s)	631, 655, 1071, 1148
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp143I	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BspACI	CCGC	3 cut(s)	332, 395, 774
BspANI	GGCC	4 cut(s)	631, 655, 1071, 1148
BspCNI	CTCAG	7 cut(s)	177, 418, 568, 577, 636, 670, 937
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	537, 1008, 1050
BspMAI	CTGCAG	1 cut(s)	1209
BspPI	GGATC	3 cut(s)	418, 839, 1136
BspT104I	TTCGAA	1 cut(s)	1075
BspT107I	GGYRCC	1 cut(s)	1006
BsrI	ACTGG	5 cut(s)	52, 114, 263, 745, 1248
BssECI	CCNNGG	3 cut(s)	301, 788, 815
BssMI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BssT1I	CCWWGG	2 cut(s)	301, 815
Bst2UI	CCWGG	2 cut(s)	657, 790
Bst4CI	ACNGT	4 cut(s)	785, 897, 919, 1006
Bst6I	CTCTTC	1 cut(s)	1319
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	170, 399, 1041
BstDEI	CTNAG	8 cut(s)	164, 426, 576, 585, 623, 678, 924, 1108
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	1226
BstKTI	GATC	6 cut(s)	34, 413, 622, 760, 834, 1131
BstMAI	GTCTC	2 cut(s)	9, 481
BstMBI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BstMWI	GCNNNNNNNGC	1 cut(s)	1111
BstNI	CCWGG	2 cut(s)	657, 790
BstNSI	RCATGY	1 cut(s)	1304
BstSCI	CCNGG	2 cut(s)	655, 788
BstSFI	CTRYAG	1 cut(s)	1205
BstV1I	GCAGC	2 cut(s)	1191, 1309
BstV2I	GAAGAC	1 cut(s)	934
BstX2I	RGATCY	2 cut(s)	410, 1128
BstYI	RGATCY	2 cut(s)	410, 1128
BsuRI	GGCC	4 cut(s)	631, 655, 1071, 1148
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	5 cut(s)	45, 254, 893, 924, 1101
Cac8I	GCNNGC	3 cut(s)	170, 399, 1041
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	1226
Cfr13I	GGNCC	3 cut(s)	443, 792, 1049
Csp6I	GTAC	4 cut(s)	282, 307, 1196, 1210
CviAII	CATG	2 cut(s)	364, 1301
CviQI	GTAC	4 cut(s)	282, 307, 1196, 1210
DdeI	CTNAG	8 cut(s)	164, 426, 576, 585, 623, 678, 924, 1108
DpnI	GATC	6 cut(s)	33, 412, 621, 759, 833, 1130
DpnII	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	1146
Eam1104I	CTCTTC	1 cut(s)	1319
EarI	CTCTTC	1 cut(s)	1319
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	301, 815
Eco147I	AGGCCT	1 cut(s)	631
Eco47I	GGWCC	3 cut(s)	443, 792, 1049
Eco88I	CYCGRG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	655, 788
EcoT14I	CCWWGG	2 cut(s)	301, 815
ErhI	CCWWGG	2 cut(s)	301, 815
FaeI	CATG	2 cut(s)	367, 1304
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
FatI	CATG	2 cut(s)	363, 1300
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	1205, 1298
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	1205, 1298
FspBI	CTAG	2 cut(s)	215, 705
GlaI	GCGC	1 cut(s)	1225
GluI	GCNGC	2 cut(s)	1205, 1298
HaeIII	GGCC	4 cut(s)	631, 655, 1071, 1148
HhaI	GCGC	1 cut(s)	1226
Hin1II	CATG	2 cut(s)	367, 1304
Hin6I	GCGC	1 cut(s)	1224
HinP1I	GCGC	1 cut(s)	1224
HindIII	AAGCTT	3 cut(s)	170, 933, 1154
HinfI	GANTC	3 cut(s)	41, 221, 1058
HphI	GGTGA	4 cut(s)	230, 289, 328, 767
Hpy166II	GTNNAC	2 cut(s)	284, 1212
Hpy188I	TCNGA	3 cut(s)	836, 947, 1367
Hpy188III	TCNNGA	4 cut(s)	29, 364, 459, 749
Hpy8I	GTNNAC	2 cut(s)	284, 1212
HpyAV	CCTTC	4 cut(s)	563, 976, 1020, 1082
HpyCH4III	ACNGT	4 cut(s)	785, 897, 919, 1006
HpyCH4IV	ACGT	2 cut(s)	54, 862
HpyCH4V	TGCA	4 cut(s)	371, 1043, 1207, 1265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1111
HpyF3I	CTNAG	8 cut(s)	164, 426, 576, 585, 623, 678, 924, 1108
HpySE526I	ACGT	2 cut(s)	54, 862
Hsp92II	CATG	2 cut(s)	367, 1304
HspAI	GCGC	1 cut(s)	1224
Kzo9I	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
LmnI	GCTCC	4 cut(s)	165, 535, 961, 1238
Lsp1109I	GCAGC	2 cut(s)	1191, 1309
LweI	GCATC	4 cut(s)	729, 943, 1008, 1286
MaeI	CTAG	2 cut(s)	215, 705
MaeII	ACGT	2 cut(s)	54, 862
MaeIII	GTNAC	3 cut(s)	452, 614, 863
MalI	GATC	6 cut(s)	33, 412, 621, 759, 833, 1130
MboI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
MboII	GAAGA	4 cut(s)	677, 934, 1282, 1306
MfeI	CAATTG	1 cut(s)	1242
MflI	RGATCY	2 cut(s)	410, 1128
MluCI	AATT	6 cut(s)	20, 99, 501, 837, 1227, 1242
MmeI	TCCRAC	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	156, 267
MspR9I	CCNGG	2 cut(s)	657, 790
MunI	CAATTG	1 cut(s)	1242
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	657, 790
MwoI	GCNNNNNNNGC	1 cut(s)	1111
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
NlaIII	CATG	2 cut(s)	367, 1304
NlaIV	GGNNCC	3 cut(s)	537, 1008, 1050
NmuCI	GTSAC	2 cut(s)	452, 863
NspI	RCATGY	1 cut(s)	1304
NspV	TTCGAA	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	631
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	41, 221, 1058
PkrI	GCNGC	2 cut(s)	1206, 1299
Psp6I	CCWGG	2 cut(s)	655, 788
PspGI	CCWGG	2 cut(s)	655, 788
PspN4I	GGNNCC	3 cut(s)	537, 1008, 1050
PspPI	GGNCC	3 cut(s)	443, 792, 1049
PstI	CTGCAG	1 cut(s)	1209
PsuI	RGATCY	2 cut(s)	410, 1128
RsaI	GTAC	4 cut(s)	283, 308, 1197, 1211
RsaNI	GTAC	4 cut(s)	282, 307, 1196, 1210
SaqAI	TTAA	2 cut(s)	156, 267
SatI	GCNGC	2 cut(s)	1205, 1298
Sau3AI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
Sau96I	GGNCC	3 cut(s)	443, 792, 1049
ScrFI	CCNGG	2 cut(s)	657, 790
SfaNI	GCATC	4 cut(s)	729, 943, 1008, 1286
SfcI	CTRYAG	1 cut(s)	1205
Sfr274I	CTCGAG	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	1075
SinI	GGWCC	3 cut(s)	443, 792, 1049
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	457, 724
SmoI	CTYRAG	2 cut(s)	457, 724
Sse9I	AATT	6 cut(s)	20, 99, 501, 837, 1227, 1242
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	3 cut(s)	332, 395, 774
SspMI	CTAG	2 cut(s)	215, 705
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	655, 788
StyI	CCWWGG	2 cut(s)	301, 815
TaaI	ACNGT	4 cut(s)	785, 897, 919, 1006
TaiI	ACGT	2 cut(s)	57, 865
TaqI	TCGA	3 cut(s)	28, 458, 1075
TasI	AATT	6 cut(s)	20, 99, 501, 837, 1227, 1242
TatI	WGTACW	3 cut(s)	281, 1195, 1209
TfiI	GAWTC	3 cut(s)	41, 221, 1058
Tru1I	TTAA	2 cut(s)	156, 267
Tru9I	TTAA	2 cut(s)	156, 267
TscAI	CASTG	5 cut(s)	52, 254, 900, 924, 1101
TseFI	GTSAC	2 cut(s)	452, 863
TseI	GCWGC	2 cut(s)	1204, 1297
Tsp45I	GTSAC	2 cut(s)	452, 863
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	5 cut(s)	52, 254, 900, 924, 1101
VpaK11BI	GGWCC	3 cut(s)	443, 792, 1049
XceI	RCATGY	1 cut(s)	1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	2 cut(s)	215, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.