AT1G71090

auxin efflux carrier family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
26812156 .. 26814173
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71090.1

Sequence Viewer

Length: 1374 bp
ATGTCAGGTTTCTCCAGTGGAAATGTTAATTCTAGGGTTGTGGATATACTCAGTGGTGTTGTGCCTTTGTTGAAGCTTATCTGTTTAACCGTGATTGGTCTACTTCTTGCTCATCCCAAGACTCAATTAGTCCCAAGAGCCACGTTTAGGCTCTTAAGCAAGCTTGTGTTTGCTTTGTTCTTACCTTGTTTGATTTTCACTGAGCTTGGAGAAAGCATTACTCTTGATAACATTGTTCAATGGTGGTTTATACCGGTCAACGTGTTACTCAGTGCGGTCGTTGGGTCCTTGATAGGATACTTGGTAGTCCTCATATGCAGACCACCTCCTGAGTTTAATAGATTCACCATTGTTATGACTGCTTTTGGAAATACTGGGAATCTTTTGTTAGCTATTGTTAGCTCGGTGTGTCACACGAAGACGAACCCTTTTGGACCGAATTGTAACTCGAGAGGGGTTTCGTATGTATCGTTTGCGCAATGGGTTGCTGTGATTCTTGTTTATACTGTTGTGTATCATATGATGGAGCCGCCTTTGGAGTACTATGAGGTCGTTGAGGAAGAAGGGGTTGAGATAGAGGAGATCAATGTGGAGAATCATGATGCTAGTAGGCCTCTTCTAGTGGAAGCTGAGTGGCCAGGGATTGAGGACAAAGAGACAGAACATTGCAAGACACCTTTTATTGCTAGAGTCTTCAACAGCATATCTAGTTTCTCTCAGACTTCTTTTCCTGAAGTTGATCTCGGGGGAGAATATGGAGGAGAGAGTTCCAGCCCTAGGTCTATTCAATGCTTGGCTGAGCCTAGAGTAATGAGGAGAATAAGAGTTGTGGCTGAACAGACTCCAGTCAAACACATACTTCAACCTCCAACAATCGCATCTCTATTAGCGATCATTATCGGATCAGTGCCTCAGCTGAAAAGTGTTGTCTTTGGGTATGATGCTCCGCTTTCTTTCATCACAGATAGTTTGAATATAATGGGAAGTGCAATGGTTCCCTCTGTGATGCTTGTACTTGGTGGTATGCTCTCTGAAGGACCAAATGAATCAACTCTTGGGTTACGTACTACGATTGGAATAAGTGTTGCAAGACTCTTGGTGCTTCCGTTAGTGGGAATAGGGATTGTGATGTCAGCTGATAAACTTGGTCTCATTTCCTCAGCAGATCCAATGTTCAAGTTTGTGCTTCTTTTGCAGTATTCGACTCCGAGTGCCATTTTACTTGGAGCCATCGCGAGTCTAAGAGGTTACGCTGTTAGAGAAGCCTCGGCACTTCTATTCTGGCAACACATCTTTGCACTGTTGTCTCTTACGTTCTACATTGTCATCTTCTTCAAACTCACCGTTGAGACTACTGTCCAAGGTATGCAATAA

Protein Analysis

457

Amino Acids

49.88

Weight (kDa)

5.47

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 20 - 441 1.5e-105 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 477
AccI GTMKAC 1 cut(s) 100
AccII CGCG 1 cut(s) 1235
AciI CCGC 3 cut(s) 275, 530, 947
AclWI GGATC 2 cut(s) 910, 1160
AcoI YGGCCR 1 cut(s) 635
AcuI CTGAAG 2 cut(s) 753, 1053
AfaI GTAC 3 cut(s) 542, 1014, 1066
AfiI CCNNNNNNNGG 3 cut(s) 147, 777, 1112
AflII CTTAAG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 8 cut(s) 73, 239, 697, 788, 863, 973, 1177, 1336
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AluBI AGCT 8 cut(s) 76, 163, 205, 392, 402, 629, 916, 1136
AluI AGCT 8 cut(s) 76, 163, 205, 392, 402, 629, 916, 1136
Alw26I GTCTC 4 cut(s) 650, 1154, 1311, 1343
AlwI GGATC 2 cut(s) 910, 1160
Ama87I CYCGRG 2 cut(s) 448, 743
AoxI GGCC 2 cut(s) 611, 635
AsiGI ACCGGT 1 cut(s) 253
AspA2I CCTAGG 1 cut(s) 776
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 285, 434, 1037
AsuHPI GGTGA 2 cut(s) 337, 1333
AvaI CYCGRG 2 cut(s) 448, 743
AvaII GGWCC 3 cut(s) 285, 434, 1037
AvrII CCTAGG 1 cut(s) 776
BalI TGGCCA 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 425, 685
BbvCI CCTCAGC 2 cut(s) 912, 1159
BccI CCATC 2 cut(s) 517, 1238
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 4 cut(s) 650, 1154, 1311, 1343
BfaI CTAG 7 cut(s) 33, 606, 620, 687, 708, 777, 804
BfrI CTTAAG 1 cut(s) 154
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 1 cut(s) 530
BlnI CCTAGG 1 cut(s) 776
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 531
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 3 cut(s) 285, 434, 1037
BmeT110I CYCGRG 2 cut(s) 448, 743
BmgT120I GGNCC 3 cut(s) 285, 434, 1037
BmiI GGNNCC 4 cut(s) 286, 528, 996, 1228
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 4 cut(s) 592, 887, 931, 996
BmuI ACTGGG 1 cut(s) 384
BoxI GACNNNNGTC 2 cut(s) 845, 1355
BpiI GAAGAC 2 cut(s) 425, 685
BpmI CTGGAG 1 cut(s) 828
Bpu10I CCTNAGC 2 cut(s) 912, 1159
Bpu1102I GCTNAGC 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 1064
BsaBI GATNNNNATC 1 cut(s) 896
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 4 cut(s) 638, 776, 1266, 1360
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 777, 1112
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 3 cut(s) 15, 379, 845
Bse3DI GCAATG 3 cut(s) 485, 664, 996
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 638, 776, 1266, 1360
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 3 cut(s) 147, 777, 1112
BseMI GCAATG 3 cut(s) 485, 664, 996
BseMII CTCAG 9 cut(s) 64, 192, 283, 321, 621, 731, 789, 926, 1173
BseNI ACTGG 3 cut(s) 15, 379, 845
BseRI GAGGAG 3 cut(s) 593, 774, 829
Bsh1236I CGCG 1 cut(s) 1235
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 613, 637
BshTI ACCGGT 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 2 cut(s) 448, 743
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 147, 777, 1112
BsmAI GTCTC 4 cut(s) 650, 1154, 1311, 1343
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 613, 637
Bso31I GGTCTC 1 cut(s) 1154
BsoBI CYCGRG 2 cut(s) 448, 743
Bsp143I GATC 5 cut(s) 582, 739, 891, 902, 1165
Bsp1720I GCTNAGC 1 cut(s) 798
Bsp68I TCGCGA 1 cut(s) 1235
BspACI CCGC 3 cut(s) 275, 530, 947
BspANI GGCC 2 cut(s) 613, 637
BspCNI CTCAG 9 cut(s) 63, 193, 282, 322, 622, 730, 790, 925, 1172
BspFNI CGCG 1 cut(s) 1235
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 4 cut(s) 286, 528, 996, 1228
BspPI GGATC 2 cut(s) 910, 1160
BspTI CTTAAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 1154
BsrDI GCAATG 3 cut(s) 485, 664, 996
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 3 cut(s) 15, 379, 845
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 638, 776, 1266, 1360
BssMI GATC 5 cut(s) 582, 739, 891, 902, 1165
BssT1I CCWWGG 2 cut(s) 776, 1360
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 5 cut(s) 91, 508, 1302, 1345, 1357
Bst6I CTCTTC 1 cut(s) 621
BstAFI CTTAAG 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 1064
BstC8I GCNNGC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 1235
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 5 cut(s) 585, 742, 894, 905, 1168
BstMAI GTCTC 4 cut(s) 650, 1154, 1311, 1343
BstMBI GATC 5 cut(s) 582, 739, 891, 902, 1165
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 1192
BstNI CCWGG 1 cut(s) 639
BstPAI GACNNNNGTC 2 cut(s) 845, 1355
BstSCI CCNGG 1 cut(s) 637
BstSNI TACGTA 1 cut(s) 1064
BstUI CGCG 1 cut(s) 1235
BstV2I GAAGAC 2 cut(s) 425, 685
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 613, 637
BtgZI GCGATG 1 cut(s) 1216
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 6 cut(s) 22, 58, 198, 277, 912, 1298
BtuMI TCGCGA 1 cut(s) 1235
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 285, 434, 1037
Csp6I GTAC 3 cut(s) 541, 1013, 1065
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 1 cut(s) 599
CviQI GTAC 3 cut(s) 541, 1013, 1065
DpnI GATC 5 cut(s) 584, 741, 893, 904, 1167
DpnII GATC 5 cut(s) 582, 739, 891, 902, 1165
EaeI YGGCCR 1 cut(s) 635
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco105I TACGTA 1 cut(s) 1064
Eco130I CCWWGG 2 cut(s) 776, 1360
Eco147I AGGCCT 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 1154
Eco47I GGWCC 3 cut(s) 285, 434, 1037
Eco57I CTGAAG 2 cut(s) 753, 1053
Eco88I CYCGRG 2 cut(s) 448, 743
EcoO109I RGGNCCY 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 776, 1360
ErhI CCWWGG 2 cut(s) 776, 1360
FaeI CATG 1 cut(s) 602
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 598
FauNDI CATATG 2 cut(s) 314, 519
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 7 cut(s) 33, 606, 620, 687, 708, 777, 804
FspI TGCGCA 1 cut(s) 477
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 2 cut(s) 613, 637
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 478
Hin1II CATG 1 cut(s) 602
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 74, 161
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 337, 1333
Hpy166II GTNNAC 2 cut(s) 101, 259
Hpy188I TCNGA 4 cut(s) 720, 902, 1033, 1209
Hpy188III TCNNGA 6 cut(s) 224, 329, 450, 599, 731, 1234
Hpy8I GTNNAC 2 cut(s) 101, 259
HpyAV CCTTC 2 cut(s) 557, 1028
HpyCH4III ACNGT 5 cut(s) 91, 508, 1302, 1345, 1357
HpyCH4IV ACGT 4 cut(s) 143, 261, 1063, 1313
HpyCH4V TGCA 7 cut(s) 318, 669, 989, 1088, 1195, 1298, 1369
HpyF10VI GCNNNNNNNGC 1 cut(s) 1192
HpySE526I ACGT 4 cut(s) 143, 261, 1063, 1313
Hsp92II CATG 1 cut(s) 602
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 5 cut(s) 582, 739, 891, 902, 1165
LmnI GCTCC 3 cut(s) 526, 949, 1226
LweI GCATC 4 cut(s) 592, 887, 931, 996
MaeI CTAG 7 cut(s) 33, 606, 620, 687, 708, 777, 804
MaeII ACGT 4 cut(s) 143, 261, 1063, 1313
MaeIII GTNAC 5 cut(s) 264, 410, 443, 1059, 1247
MalI GATC 5 cut(s) 584, 741, 893, 904, 1167
MboI GATC 5 cut(s) 582, 739, 891, 902, 1165
MboII GAAGA 6 cut(s) 430, 572, 608, 685, 1321, 1324
MflI RGATCY 1 cut(s) 1165
MlsI TGGCCA 1 cut(s) 637
MluCI AATT 3 cut(s) 28, 125, 439
MluNI TGGCCA 1 cut(s) 637
MlyI GAGTC 6 cut(s) 115, 699, 835, 1086, 1198, 1246
MmeI TCCRAC 1 cut(s) 893
Mox20I TGGCCA 1 cut(s) 637
MscI TGGCCA 1 cut(s) 637
MseI TTAA 4 cut(s) 27, 86, 155, 336
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 637
MspA1I CMGCKG 2 cut(s) 916, 1136
MspCI CTTAAG 1 cut(s) 154
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 1 cut(s) 1235
MwoI GCNNNNNNNGC 1 cut(s) 1192
NdeI CATATG 2 cut(s) 314, 519
NdeII GATC 5 cut(s) 582, 739, 891, 902, 1165
NlaIII CATG 1 cut(s) 602
NlaIV GGNNCC 4 cut(s) 286, 528, 996, 1228
NmeAIII GCCGAG 1 cut(s) 1247
NmuCI GTSAC 1 cut(s) 410
NruI TCGCGA 1 cut(s) 1235
NsbI TGCGCA 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 448
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PfeI GAWTC 5 cut(s) 342, 379, 493, 595, 1046
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 1 cut(s) 531
PleI GAGTC 6 cut(s) 115, 698, 835, 1086, 1198, 1245
PpsI GAGTC 6 cut(s) 115, 698, 835, 1086, 1198, 1245
Ppu21I YACGTR 1 cut(s) 1064
PpuMI RGGWCCY 1 cut(s) 285
PshAI GACNNNNGTC 2 cut(s) 845, 1355
Psp5II RGGWCCY 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 4 cut(s) 286, 528, 996, 1228
PspPI GGNCC 3 cut(s) 285, 434, 1037
PspPPI RGGWCCY 1 cut(s) 285
PsuI RGATCY 1 cut(s) 1165
PvuII CAGCTG 2 cut(s) 916, 1136
RruI TCGCGA 1 cut(s) 1235
RsaI GTAC 3 cut(s) 542, 1014, 1066
RsaNI GTAC 3 cut(s) 541, 1013, 1065
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 4 cut(s) 27, 86, 155, 336
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 5 cut(s) 582, 739, 891, 902, 1165
Sau96I GGNCC 3 cut(s) 285, 434, 1037
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 6 cut(s) 115, 699, 835, 1086, 1198, 1246
ScrFI CCNGG 1 cut(s) 639
SfaNI GCATC 4 cut(s) 592, 887, 931, 996
Sfr274I CTCGAG 1 cut(s) 448
SinI GGWCC 3 cut(s) 285, 434, 1037
SlaI CTCGAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 154, 448
SmoI CTYRAG 2 cut(s) 154, 448
SnaBI TACGTA 1 cut(s) 1064
Sse9I AATT 3 cut(s) 28, 125, 439
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 3 cut(s) 275, 530, 947
SspMI CTAG 7 cut(s) 33, 606, 620, 687, 708, 777, 804
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 776, 1360
TaaI ACNGT 5 cut(s) 91, 508, 1302, 1345, 1357
TaiI ACGT 4 cut(s) 146, 264, 1066, 1316
TaqI TCGA 2 cut(s) 449, 1202
TaqII GACCGA 1 cut(s) 451
TasI AATT 3 cut(s) 28, 125, 439
TatI WGTACW 2 cut(s) 540, 1012
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 5 cut(s) 342, 379, 493, 595, 1046
Tru1I TTAA 4 cut(s) 27, 86, 155, 336
Tru9I TTAA 4 cut(s) 27, 86, 155, 336
TscAI CASTG 6 cut(s) 22, 58, 205, 277, 912, 1305
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 946, 1059
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 6 cut(s) 22, 58, 205, 277, 912, 1305
Vha464I CTTAAG 1 cut(s) 154
VpaK11BI GGWCC 3 cut(s) 285, 434, 1037
XhoI CTCGAG 1 cut(s) 448
XmaJI CCTAGG 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 7 cut(s) 33, 606, 620, 687, 708, 777, 804
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.