Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

30940161 .. 30942625

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGTCTCGGTATCTTGTTGAATTGGTTCAAAATAATTTGGAATCCACTGGGGATGTGATGAGTGCGATAACGCCTTTGATGAAACTCTTGTCCCTTACAGTTATTGGACTGGTTCTCGGTTACCCAAAATTTCAAATGATACCAAGAGCAACGTTTAAGCTCCTCAGCAAGCTTGTTTTCGCCTTGTTCTTGCCCTGTCTAATCTTTACCGAACTAGGCGAGTCGATTACGCTTGAAAACTTTGTTCAGTGGTGGTTTATCCCAGTTAATGTGTTGGTGAGTACACTCATTGGTTGCTTCCTTGGGTACTTGGTGGTGATTGTATGTCGTCCGCCTCCAGAGTTGAACAGATTTACTATTATCATGACTGCATTTGGGAATACAGGAAATCTCCCGCTTGCTTTGGTTGGATCTGTTTGTCATACTGAGAAAAATCCATTTGGACCTCATTGTCACTCAAGAGGGGTGGCTTATGTCTCTTTTGCCCAATGGGTTGCTGTGATTCTTGTTTATACATTTGTGTATCATATGATGGAACCACCATTGGAGTATTATGAGGTTGTTGAGGAAGGGGCTGAAATTGAGGAGTCGAGAGAGAACAGAAGTACCGACCTCAGTAGGCCTTTACTAGTGGAAGCTGAATGGCCTGGTATTGAAGAAAAGGAAACTGAGCATTCCAAGACAGCCTTTATTGCTGGTGTTTTCAACAGCATCTCAAATGTTTCACAGAATGGTATACCAGATGGTGATCTCTCTGCAGAAAGTGGTGGAAACAGTCCTAGGTCCATTAGGTGTTTGGCTGAACCAAGGGTGGTTAGGAGGATCAGAACTGTTGCTGAACAAACTCCAATACAGCACATACTTCAACCACCAACGATTGCTTCACTGATGGCTATCATTATTGGGACCGTGCCTCAGTTGAAAGCTGTTGTCTTCGGACATGATGCTCCACTATCCTTCCTCACAGATAGTTTAGAGATTTTAGCTGGTGCTATGGTGCCTTCTGTGATGCTTATTCTTGGGGGTATGCTTGCAGAGGGACCAAATGATTCTAAACTTGGCATTCGAACTACAATTGGTATATCTGTGGCAAGGCTCTTAGTGCTTCCTCTGGTGGGAATTGGTATTGTGGCATTGGCCGATAAGCTCGATTTTCTGGTTGATGGTGACGCAATGTATAGGTTTGTACTTTTACTGCAGTACACAACCCCAAGCGCAATTCTATTGGGAGCAATTGCCAGATTGAGGGGATATGCAGTTAGTGAGGCTTCAGCACTTCTATTCTGGCAGCATGTGTTTGCTCTCTTCTCCCTTTCCTTGTATATTGTTATCTACTTTAAACTAATAGCATACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

453

Amino Acids

49.66

Weight (kDa)

5.46

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	22 - 442	1e-95	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	997
AccI	GTMKAC	1 cut(s)	736
AciI	CCGC	2 cut(s)	332, 395
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	2 cut(s)	418, 830
AcoI	YGGCCR	1 cut(s)	1137
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	1254
AfaI	GTAC	5 cut(s)	283, 308, 607, 1188, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	1115, 1245
AgsI	TTSAA	9 cut(s)	20, 29, 134, 236, 346, 656, 706, 866, 922
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	646
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AluBI	AGCT	6 cut(s)	160, 172, 638, 926, 986, 1147
AluI	AGCT	6 cut(s)	160, 172, 638, 926, 986, 1147
Alw26I	GTCTC	2 cut(s)	9, 481
AlwI	GGATC	2 cut(s)	418, 830
AoxI	GGCC	3 cut(s)	620, 644, 1137
ApeKI	GCWGC	1 cut(s)	1288
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	24
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	1 cut(s)	1217
AspS9I	GGNCC	4 cut(s)	443, 783, 906, 1040
AsuHPI	GGTGA	4 cut(s)	289, 328, 758, 1178
AsuII	TTCGAA	1 cut(s)	1066
AvaII	GGWCC	4 cut(s)	443, 783, 906, 1040
AvrII	CCTAGG	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	589, 622
BanI	GGYRCC	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	925
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	1300
BccI	CCATC	4 cut(s)	526, 737, 883, 1157
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	9, 481
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	3 cut(s)	215, 629, 780
BfmI	CTRYAG	2 cut(s)	756, 1196
BisI	GCNGC	1 cut(s)	1289
BlnI	CCTAGG	1 cut(s)	779
BlsI	GCNGC	1 cut(s)	1290
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	4 cut(s)	443, 783, 906, 1040
BmgT120I	GGNCC	4 cut(s)	443, 783, 906, 1040
BmiI	GGNNCC	4 cut(s)	537, 907, 999, 1041
BmrFI	CCNGG	1 cut(s)	648
BmrI	ACTGGG	2 cut(s)	57, 257
BmsI	GCATC	3 cut(s)	720, 934, 999
BmuI	ACTGGG	2 cut(s)	57, 257
BpiI	GAAGAC	1 cut(s)	925
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	1066
BpuEI	CTTGAG	1 cut(s)	442
BsaBI	GATNNNNATC	2 cut(s)	747, 893
BsaJI	CCNNGG	3 cut(s)	301, 779, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	1115, 1245
Bse1I	ACTGG	3 cut(s)	52, 114, 263
Bse3DI	GCAATG	1 cut(s)	1179
Bse8I	GATNNNNATC	2 cut(s)	747, 893
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	301, 779, 806
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	2 cut(s)	747, 893
BseLI	CCNNNNNNNGG	2 cut(s)	1115, 1245
BseMI	GCAATG	1 cut(s)	1179
BseMII	CTCAG	5 cut(s)	178, 417, 628, 660, 929
BseNI	ACTGG	3 cut(s)	52, 114, 263
BseRI	GAGGAG	2 cut(s)	152, 599
BseXI	GCAGC	1 cut(s)	1300
BshFI	GGCC	3 cut(s)	622, 646, 1139
BshNI	GGYRCC	1 cut(s)	997
BslFI	GGGAC	3 cut(s)	76, 919, 1053
BslI	CCNNNNNNNGG	2 cut(s)	1115, 1245
BsmAI	GTCTC	2 cut(s)	9, 481
BsmFI	GGGAC	3 cut(s)	76, 919, 1053
BsmI	GAATGC	2 cut(s)	673, 1062
BsnI	GGCC	3 cut(s)	622, 646, 1139
Bsp119I	TTCGAA	1 cut(s)	1066
Bsp143I	GATC	3 cut(s)	410, 748, 822
BspACI	CCGC	2 cut(s)	332, 395
BspANI	GGCC	3 cut(s)	622, 646, 1139
BspCNI	CTCAG	5 cut(s)	177, 418, 627, 661, 928
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	537, 907, 999, 1041
BspMAI	CTGCAG	2 cut(s)	760, 1200
BspPI	GGATC	2 cut(s)	418, 830
BspT104I	TTCGAA	1 cut(s)	1066
BspT107I	GGYRCC	1 cut(s)	997
BsrDI	GCAATG	1 cut(s)	1179
BsrI	ACTGG	3 cut(s)	52, 114, 263
BssECI	CCNNGG	3 cut(s)	301, 779, 806
BssMI	GATC	3 cut(s)	410, 748, 822
BssNAI	GTATAC	1 cut(s)	737
BssT1I	CCWWGG	3 cut(s)	301, 779, 806
Bst1107I	GTATAC	1 cut(s)	737
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	4 cut(s)	100, 776, 832, 910
Bst6I	CTCTTC	1 cut(s)	1310
BstBI	TTCGAA	1 cut(s)	1066
BstC8I	GCNNGC	3 cut(s)	170, 399, 1032
BstDEI	CTNAG	6 cut(s)	164, 426, 614, 669, 915, 1099
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	1217
BstKTI	GATC	3 cut(s)	413, 751, 825
BstMAI	GTCTC	2 cut(s)	9, 481
BstMBI	GATC	3 cut(s)	410, 748, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 1102
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	1295
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	2 cut(s)	756, 1196
BstV1I	GCAGC	1 cut(s)	1300
BstV2I	GAAGAC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	737
BsuRI	GGCC	3 cut(s)	622, 646, 1139
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	45, 254, 884
Cac8I	GCNNGC	3 cut(s)	170, 399, 1032
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	1217
Cfr13I	GGNCC	4 cut(s)	443, 783, 906, 1040
CseI	GACGC	1 cut(s)	1178
Csp6I	GTAC	5 cut(s)	282, 307, 606, 1187, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	3 cut(s)	364, 941, 1292
CviQI	GTAC	5 cut(s)	282, 307, 606, 1187, 1201
DdeI	CTNAG	6 cut(s)	164, 426, 614, 669, 915, 1099
DpnI	GATC	3 cut(s)	412, 750, 824
DpnII	GATC	3 cut(s)	410, 748, 822
DraI	TTTAAA	1 cut(s)	1339
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	1137
Eam1104I	CTCTTC	1 cut(s)	1310
EarI	CTCTTC	1 cut(s)	1310
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	3 cut(s)	301, 779, 806
Eco147I	AGGCCT	1 cut(s)	622
Eco47I	GGWCC	4 cut(s)	443, 783, 906, 1040
Eco57I	CTGAAG	1 cut(s)	1254
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	3 cut(s)	301, 779, 806
ErhI	CCWWGG	3 cut(s)	301, 779, 806
FaeI	CATG	3 cut(s)	367, 944, 1295
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	3 cut(s)	76, 919, 1053
FatI	CATG	3 cut(s)	363, 940, 1291
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	1 cut(s)	1289
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	1289
FspBI	CTAG	3 cut(s)	215, 629, 780
GlaI	GCGC	1 cut(s)	1216
GluI	GCNGC	1 cut(s)	1289
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	622, 646, 1139
HgaI	GACGC	1 cut(s)	1178
HhaI	GCGC	1 cut(s)	1217
Hin1II	CATG	3 cut(s)	367, 944, 1295
Hin6I	GCGC	1 cut(s)	1215
HinP1I	GCGC	1 cut(s)	1215
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	5 cut(s)	41, 221, 502, 587, 1049
HphI	GGTGA	4 cut(s)	289, 328, 758, 1178
Hpy166II	GTNNAC	3 cut(s)	284, 737, 1203
Hpy188I	TCNGA	2 cut(s)	827, 938
Hpy188III	TCNNGA	4 cut(s)	338, 364, 459, 591
Hpy8I	GTNNAC	3 cut(s)	284, 737, 1203
HpyAV	CCTTC	3 cut(s)	563, 967, 1011
HpyCH4III	ACNGT	4 cut(s)	100, 776, 832, 910
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	5 cut(s)	371, 758, 1034, 1198, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 1102
HpyF3I	CTNAG	6 cut(s)	164, 426, 614, 669, 915, 1099
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	367, 944, 1295
HspAI	GCGC	1 cut(s)	1215
Kzo9I	GATC	3 cut(s)	410, 748, 822
LmnI	GCTCC	3 cut(s)	165, 952, 1229
Lsp1109I	GCAGC	1 cut(s)	1300
LweI	GCATC	3 cut(s)	720, 934, 999
MaeI	CTAG	3 cut(s)	215, 629, 780
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	119, 452, 1166
MalI	GATC	3 cut(s)	412, 750, 824
MboI	GATC	3 cut(s)	410, 748, 822
MboII	GAAGA	3 cut(s)	668, 925, 1297
MfeI	CAATTG	2 cut(s)	1074, 1233
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	8 cut(s)	20, 34, 128, 579, 1074, 1119, 1218, 1233
MlyI	GAGTC	2 cut(s)	230, 596
MmeI	TCCRAC	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	156, 267, 1338
MslI	CAYNNNNRTG	1 cut(s)	1354
MspR9I	CCNGG	1 cut(s)	648
MunI	CAATTG	2 cut(s)	1074, 1233
Mva1269I	GAATGC	2 cut(s)	673, 1062
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	692, 1102
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	3 cut(s)	410, 748, 822
NlaIII	CATG	3 cut(s)	367, 944, 1295
NlaIV	GGNNCC	4 cut(s)	537, 907, 999, 1041
NmuCI	GTSAC	2 cut(s)	452, 1166
NspI	RCATGY	1 cut(s)	1295
NspV	TTCGAA	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	622
PctI	GAATGC	2 cut(s)	673, 1062
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	41, 502, 1049
PkrI	GCNGC	1 cut(s)	1290
PleI	GAGTC	2 cut(s)	229, 595
PpsI	GAGTC	2 cut(s)	229, 595
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	646
PspEI	GGTNACC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	4 cut(s)	537, 907, 999, 1041
PspPI	GGNCC	4 cut(s)	443, 783, 906, 1040
PstI	CTGCAG	2 cut(s)	760, 1200
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	5 cut(s)	283, 308, 607, 1188, 1202
RsaNI	GTAC	5 cut(s)	282, 307, 606, 1187, 1201
RseI	CAYNNNNRTG	1 cut(s)	1354
SaqAI	TTAA	3 cut(s)	156, 267, 1338
SatI	GCNGC	1 cut(s)	1289
Sau3AI	GATC	3 cut(s)	410, 748, 822
Sau96I	GGNCC	4 cut(s)	443, 783, 906, 1040
SchI	GAGTC	2 cut(s)	230, 596
ScrFI	CCNGG	1 cut(s)	648
SfaNI	GCATC	3 cut(s)	720, 934, 999
SfcI	CTRYAG	2 cut(s)	756, 1196
SfuI	TTCGAA	1 cut(s)	1066
SinI	GGWCC	4 cut(s)	443, 783, 906, 1040
SmiMI	CAYNNNNRTG	1 cut(s)	1354
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	8 cut(s)	20, 34, 128, 579, 1074, 1119, 1218, 1233
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	2 cut(s)	332, 395
SspMI	CTAG	3 cut(s)	215, 629, 780
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	3 cut(s)	301, 779, 806
TaaI	ACNGT	4 cut(s)	100, 776, 832, 910
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	4 cut(s)	224, 590, 1066, 1149
TasI	AATT	8 cut(s)	20, 34, 128, 579, 1074, 1119, 1218, 1233
TatI	WGTACW	3 cut(s)	281, 1186, 1200
TfiI	GAWTC	3 cut(s)	41, 502, 1049
Tru1I	TTAA	3 cut(s)	156, 267, 1338
Tru9I	TTAA	3 cut(s)	156, 267, 1338
TscAI	CASTG	3 cut(s)	52, 254, 891
TseFI	GTSAC	2 cut(s)	452, 1166
TseI	GCWGC	1 cut(s)	1288
Tsp45I	GTSAC	2 cut(s)	452, 1166
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	52, 254, 891
VpaK11BI	GGWCC	4 cut(s)	443, 783, 906, 1040
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	1295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XmaJI	CCTAGG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	215, 629, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.