Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Forward (+)

4732200 .. 4733570

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTCTCGGTATCTTGTTGAATTGGTTCAAGATCATTTGGAATCCACTGGGGACGTGATGAGTGCGATAATGCCTTTGATGAAACTCTTGTCCCTCACAATTATTGGACTGGTTCTCGCTTACCCAAAAACTCAAATCATACCGAGAGCTACCTTTAAGCTCCTCAGCAAGCTTGTTTTTGCCTTGTTCTTGCCCTGTCTAATCTTTACCGAACTAGGTGAATCCATTACGCTTGAAAACTTTGTTCAGTGGTGGTTTATCCCAGTTAATGTGTTGGTGAGTACACTTGTTGGTTGTTTCCTTGGGTACTTGGTGGTGATTATATGTCTTCCGCCCCCAGAGTTGAACAGATTTACTATTATCATGACTGCATTTGGGAATACAGGAAATCTCCCGCTTGCTCTTGTTGGATCTGTTTGTCATACTGAGAAAAATCCATTTGGACCTCATTGTCACTCGAGAGGGGTGGCTTATGTCTCTTTTGCCCAATGGGTTGCTGTAATTCTTGTTTATACCTTTGTCTATCATATGATGGAGCCACCATTGGAGTATTATGAGGTTGTTGAAGAAGGGACTGAGGGGACTGAGATTGAGGAATTGAAAGATAACGGAGGTAACGATCTCAGTAGGCCTTTACTTGTGGAAGCTGAATGGCCTGGTATTGAAGAAAAAGAAACTGAGCATTCCAAGACACCCTTTATTGCTAGGGTTTTCAACAGCATCTCAAGTGTTTCTCAGACTGGTATTCCAGATGGTGATCTCTCTGTGGAAAGCGGTGGAAACAGTCCCAGGTCCATTAGGTGTTTGGCTGAACCAAGGGTGGTTAGGAGGATCAGAATTGTTGCCGAACAAACTCCAATACGTCACATACTTCAACCCCCAACGATTGCTTCACTGTTTGCTATCATTATTGGGACAGTGCCTCAGTTGAAAGCTTTTGTCTTTGGATATGATGCTCCGCTATCCTTCCTCACAGATAGTTTAGAGATTTTAGCTGGTGCTACGGTGCCTTCTGTGATGCTTATTCTTGGGGGTATGCTTGCAGAGGGACCAAATGATTCTAAACTTGGCCTTCGAACTACCATCGGTATATCTGTGGCAAGGCTCTTAGTGCTTCCTCTGGTGGGGATCTGTATTGTGGCATTGGCCAATAAGCTTAATTTTCTGGTTGATGGCGACGCAATGTATAGGTTTGTGCTTCTGCTCCAGTACACGACCCCAAGCGCAATTTTATTGGGAGCAATAGCCAGTTTGAGAGGATATGCAGTTAGTGAGGCATCAGCACTCATCTTCTGGCAGCATGTGTTTGCTCTCTTCTCCCTTTCCCTGTATATTGTTATCTACTTCAAACTAATTCCGTACATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

457

Amino Acids

50.15

Weight (kDa)

5.36

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	22 - 445	1.5e-92	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	1006
AciI	CCGC	4 cut(s)	332, 395, 774, 959
AclWI	GGATC	3 cut(s)	418, 839, 1136
AcoI	YGGCCR	1 cut(s)	1146
AfaI	GTAC	4 cut(s)	283, 308, 1211, 1361
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	655, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	874, 906
AluBI	AGCT	7 cut(s)	149, 160, 172, 647, 935, 995, 1156
AluI	AGCT	7 cut(s)	149, 160, 172, 647, 935, 995, 1156
Alw26I	GTCTC	2 cut(s)	9, 481
AlwI	GGATC	3 cut(s)	418, 839, 1136
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	629, 653, 1069, 1146
ApeKI	GCWGC	1 cut(s)	1297
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	1226
AspS9I	GGNCC	3 cut(s)	443, 792, 1049
AsuHPI	GGTGA	4 cut(s)	230, 289, 328, 767
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	443, 792, 1049
BalI	TGGCCA	1 cut(s)	1148
BanI	GGYRCC	1 cut(s)	1006
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	1309
BccI	CCATC	4 cut(s)	526, 746, 1091, 1166
BciT130I	CCWGG	2 cut(s)	657, 790
BcoDI	GTCTC	2 cut(s)	9, 481
BfaI	CTAG	2 cut(s)	215, 705
BisI	GCNGC	1 cut(s)	1298
BlsI	GCNGC	1 cut(s)	1299
Bme1390I	CCNGG	2 cut(s)	657, 790
Bme18I	GGWCC	3 cut(s)	443, 792, 1049
BmeT110I	CYCGRG	1 cut(s)	457
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	443, 792, 1049
BmiI	GGNNCC	3 cut(s)	537, 1008, 1050
BmrFI	CCNGG	2 cut(s)	657, 790
BmrI	ACTGGG	2 cut(s)	57, 257
BmsI	GCATC	4 cut(s)	729, 943, 1008, 1286
BmuI	ACTGGG	2 cut(s)	57, 257
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	301, 788, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse1I	ACTGG	6 cut(s)	52, 114, 263, 745, 1207, 1248
Bse3DI	GCAATG	1 cut(s)	1188
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	657, 790
BseDI	CCNNGG	3 cut(s)	301, 788, 815
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMI	GCAATG	1 cut(s)	1188
BseMII	CTCAG	8 cut(s)	178, 417, 567, 576, 637, 669, 749, 938
BseNI	ACTGG	6 cut(s)	52, 114, 263, 745, 1207, 1248
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	1309
BshFI	GGCC	4 cut(s)	631, 655, 1071, 1148
BshNI	GGYRCC	1 cut(s)	1006
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	2 cut(s)	9, 481
BsmFI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	4 cut(s)	631, 655, 1071, 1148
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp143I	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BspACI	CCGC	4 cut(s)	332, 395, 774, 959
BspANI	GGCC	4 cut(s)	631, 655, 1071, 1148
BspCNI	CTCAG	8 cut(s)	177, 418, 568, 577, 636, 670, 748, 937
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	537, 1008, 1050
BspPI	GGATC	3 cut(s)	418, 839, 1136
BspT104I	TTCGAA	1 cut(s)	1075
BspT107I	GGYRCC	1 cut(s)	1006
BsrDI	GCAATG	1 cut(s)	1188
BsrI	ACTGG	6 cut(s)	52, 114, 263, 745, 1207, 1248
BssECI	CCNNGG	3 cut(s)	301, 788, 815
BssMI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BssT1I	CCWWGG	2 cut(s)	301, 815
Bst2UI	CCWGG	2 cut(s)	657, 790
Bst4CI	ACNGT	4 cut(s)	785, 897, 919, 1006
Bst6I	CTCTTC	1 cut(s)	1319
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	170, 399, 1041
BstDEI	CTNAG	9 cut(s)	164, 426, 576, 585, 623, 678, 735, 924, 1108
BstHHI	GCGC	1 cut(s)	1226
BstKTI	GATC	6 cut(s)	34, 413, 622, 760, 834, 1131
BstMAI	GTCTC	2 cut(s)	9, 481
BstMBI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
BstMWI	GCNNNNNNNGC	1 cut(s)	1111
BstNI	CCWGG	2 cut(s)	657, 790
BstNSI	RCATGY	1 cut(s)	1304
BstSCI	CCNGG	2 cut(s)	655, 788
BstV1I	GCAGC	1 cut(s)	1309
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	410, 1128
BstYI	RGATCY	2 cut(s)	410, 1128
BsuRI	GGCC	4 cut(s)	631, 655, 1071, 1148
BtrI	CACGTC	1 cut(s)	55
BtsIMutI	CAGTG	4 cut(s)	45, 254, 893, 924
Cac8I	GCNNGC	3 cut(s)	170, 399, 1041
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	1226
Cfr13I	GGNCC	3 cut(s)	443, 792, 1049
CseI	GACGC	1 cut(s)	1187
Csp6I	GTAC	4 cut(s)	282, 307, 1210, 1360
CviAII	CATG	2 cut(s)	364, 1301
CviQI	GTAC	4 cut(s)	282, 307, 1210, 1360
DdeI	CTNAG	9 cut(s)	164, 426, 576, 585, 623, 678, 735, 924, 1108
DpnI	GATC	6 cut(s)	33, 412, 621, 759, 833, 1130
DpnII	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	1146
Eam1104I	CTCTTC	1 cut(s)	1319
EarI	CTCTTC	1 cut(s)	1319
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	301, 815
Eco147I	AGGCCT	1 cut(s)	631
Eco47I	GGWCC	3 cut(s)	443, 792, 1049
Eco88I	CYCGRG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	655, 788
EcoT14I	CCWWGG	2 cut(s)	301, 815
ErhI	CCWWGG	2 cut(s)	301, 815
FaeI	CATG	2 cut(s)	367, 1304
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	7 cut(s)	65, 76, 586, 595, 771, 928, 1062
FatI	CATG	2 cut(s)	363, 1300
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	1298
Fsp4HI	GCNGC	1 cut(s)	1298
FspBI	CTAG	2 cut(s)	215, 705
GlaI	GCGC	1 cut(s)	1225
GluI	GCNGC	1 cut(s)	1298
GsuI	CTGGAG	1 cut(s)	1190
HaeIII	GGCC	4 cut(s)	631, 655, 1071, 1148
HgaI	GACGC	1 cut(s)	1187
HhaI	GCGC	1 cut(s)	1226
Hin1II	CATG	2 cut(s)	367, 1304
Hin6I	GCGC	1 cut(s)	1224
HinP1I	GCGC	1 cut(s)	1224
HindIII	AAGCTT	3 cut(s)	170, 933, 1154
HinfI	GANTC	3 cut(s)	41, 221, 1058
HphI	GGTGA	4 cut(s)	230, 289, 328, 767
Hpy166II	GTNNAC	2 cut(s)	284, 1212
Hpy188I	TCNGA	3 cut(s)	738, 836, 1370
Hpy188III	TCNNGA	4 cut(s)	29, 364, 459, 749
Hpy8I	GTNNAC	2 cut(s)	284, 1212
Hpy99I	CGWCG	1 cut(s)	1181
HpyAV	CCTTC	4 cut(s)	563, 976, 1020, 1082
HpyCH4III	ACNGT	4 cut(s)	785, 897, 919, 1006
HpyCH4IV	ACGT	2 cut(s)	54, 862
HpyCH4V	TGCA	3 cut(s)	371, 1043, 1265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1111
HpyF3I	CTNAG	9 cut(s)	164, 426, 576, 585, 623, 678, 735, 924, 1108
HpySE526I	ACGT	2 cut(s)	54, 862
Hsp92II	CATG	2 cut(s)	367, 1304
HspAI	GCGC	1 cut(s)	1224
Kzo9I	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
LmnI	GCTCC	5 cut(s)	165, 535, 961, 1209, 1238
Lsp1109I	GCAGC	1 cut(s)	1309
LweI	GCATC	4 cut(s)	729, 943, 1008, 1286
MaeI	CTAG	2 cut(s)	215, 705
MaeII	ACGT	2 cut(s)	54, 862
MaeIII	GTNAC	3 cut(s)	452, 614, 863
MalI	GATC	6 cut(s)	33, 412, 621, 759, 833, 1130
MboI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
MboII	GAAGA	5 cut(s)	320, 578, 677, 1282, 1306
MflI	RGATCY	2 cut(s)	410, 1128
MlsI	TGGCCA	1 cut(s)	1148
MluCI	AATT	8 cut(s)	20, 99, 501, 596, 837, 1159, 1227, 1353
MluNI	TGGCCA	1 cut(s)	1148
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	1148
MseI	TTAA	3 cut(s)	156, 267, 1158
Msp20I	TGGCCA	1 cut(s)	1148
MspR9I	CCNGG	2 cut(s)	657, 790
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	657, 790
MwoI	GCNNNNNNNGC	1 cut(s)	1111
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
NlaIII	CATG	2 cut(s)	367, 1304
NlaIV	GGNNCC	3 cut(s)	537, 1008, 1050
NmuCI	GTSAC	2 cut(s)	452, 863
NspI	RCATGY	1 cut(s)	1304
NspV	TTCGAA	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	41, 221, 1058
PkrI	GCNGC	1 cut(s)	1299
Psp6I	CCWGG	2 cut(s)	655, 788
PspGI	CCWGG	2 cut(s)	655, 788
PspN4I	GGNNCC	3 cut(s)	537, 1008, 1050
PspPI	GGNCC	3 cut(s)	443, 792, 1049
PsuI	RGATCY	2 cut(s)	410, 1128
RsaI	GTAC	4 cut(s)	283, 308, 1211, 1361
RsaNI	GTAC	4 cut(s)	282, 307, 1210, 1360
SaqAI	TTAA	3 cut(s)	156, 267, 1158
SatI	GCNGC	1 cut(s)	1298
Sau3AI	GATC	6 cut(s)	31, 410, 619, 757, 831, 1128
Sau96I	GGNCC	3 cut(s)	443, 792, 1049
ScrFI	CCNGG	2 cut(s)	657, 790
SfaNI	GCATC	4 cut(s)	729, 943, 1008, 1286
Sfr274I	CTCGAG	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	1075
SinI	GGWCC	3 cut(s)	443, 792, 1049
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	457, 724
SmoI	CTYRAG	2 cut(s)	457, 724
Sse9I	AATT	8 cut(s)	20, 99, 501, 596, 837, 1159, 1227, 1353
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	4 cut(s)	332, 395, 774, 959
SspMI	CTAG	2 cut(s)	215, 705
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	655, 788
StyI	CCWWGG	2 cut(s)	301, 815
TaaI	ACNGT	4 cut(s)	785, 897, 919, 1006
TaiI	ACGT	2 cut(s)	57, 865
TaqI	TCGA	2 cut(s)	458, 1075
TasI	AATT	8 cut(s)	20, 99, 501, 596, 837, 1159, 1227, 1353
TatI	WGTACW	2 cut(s)	281, 1209
TfiI	GAWTC	3 cut(s)	41, 221, 1058
Tru1I	TTAA	3 cut(s)	156, 267, 1158
Tru9I	TTAA	3 cut(s)	156, 267, 1158
TscAI	CASTG	4 cut(s)	52, 254, 900, 924
TseFI	GTSAC	2 cut(s)	452, 863
TseI	GCWGC	1 cut(s)	1297
Tsp45I	GTSAC	2 cut(s)	452, 863
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	2 cut(s)	624, 1347
TspRI	CASTG	4 cut(s)	52, 254, 900, 924
VpaK11BI	GGWCC	3 cut(s)	443, 792, 1049
XceI	RCATGY	1 cut(s)	1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	2 cut(s)	215, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.