FvH4_1g29070

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002715
Physical Location & Seq
Reverse (-)
21530329 .. 21532382
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29070.t3

Sequence Viewer

Length: 1389 bp
ATGACGATATCAATGGAAAATATAGTTGCTTCATTGCAAGGAACTCTGAAAGTAGAAGTGCTAAGTGCAGTAGTGCCTTTACTCATTTTCCTGTCTATGGGTCTGATTGGCTTAGTTCTTGCCCACCCAAAATACCAACTAGTCCCCCGAGCTACTTTCACATTTCTAAGCAAGCTGGTGTTTGTTATCTTCTTGCCCTGCTTGATCTTCACCTATCTCGGCCCAACAATCACTCTGAAGAACTTACTGCTCTGGTGGTTCATTCCGGTAAATGTTGTTCTGAGTACCGCCATTGGCTGCGCATTGGGGTTGCTGGTGGCGCTAATCTGTCGGCCTCCCCGCGACTACTTTCGATTCACCATAATCATGACTGCCTTTGGAAACACAGGTAATCTGCCCCTTGCAATTGTTACCTCTATTTGTCAAAGTGATGATAACCCTTTCGGTTCTGATTGTTACGACTATGGTGTGTCATATGTATCATTCTCCCAATGGGTTTCTGTTATTCTGGTTTACACACTTGTTTACCATATGATGGAGCCCCCATTACGAGATCAGAGTCTGCTTGTTGAGGAAGAAGAAGATGATGAAGGTGAGATATTTGAGGATATTATTTCTGATCCAAACTACGAAAATGAAAATCATCTCAGTAGGCCGCTTCTTGTTGAGGCTGAATGGCCTGGAATTGAAGATAACGAAACTGAGCACTGCAAGACACCCTTTATTGCAAGACTCTTTAATACTAGAAGCTCCTCTGCTCGACTTTCAGTCTCCACTATTCCAGATGTAAATGGCCTAATTGAAGAGGAGGGAACATCCAACTCCAAGTGTTTGGCGGAGCCTAGAATGGTCAGAAAGATTAGATCAGTAGTGGGGATGACACCAATTCATCACATTCTTCAGCCCCCAACAATTGCATCCCTGTTGGCTATTATCATTGGGATGGTTCCCACTTTGAAATCAATTGTCTATGATGACGATGCAGTTCTTTCATTCTTTACAGACAGCTTAGAAATTCTATCCGAGGCCATGGTGCCTTCTGCTATGCTTGTTCTTGGAGGAATGCTTGCTCAAGGACCAAATGAATCCAATCTGGGAATTCGAACTACAGTTGGGATAATTATTGCAAGACTTTTCATACTTCCTTTGATTGGAATTGGTGTCATTCATTTGGCTGATAAATGGAATATTCTGATAGCCGGAGATCAAATGTTTCGGTTGGTCCTTTTGCTGCAGTACACAATGCCAAGTGCCATCTTGTTAGGAGCCATTGCAAGCTTGAGGGGTTATGCCGTTAAGGAGGCTTCAGCACTGCTCTTCTGGCAGCATGTCGTTGCTGTTTTTTCTATTTCATTCTACATACTCGTGTACTTCTATATATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

463

Amino Acids

51.22

Weight (kDa)

4.85

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 31 - 461 6.8e-88 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 535
AccII CGCG 1 cut(s) 342
AciI CCGC 4 cut(s) 288, 340, 656, 836
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 2 cut(s) 1014, 1098
AcuI CTGAAG 3 cut(s) 257, 884, 1290
AfaI GTAC 3 cut(s) 286, 1238, 1370
AfiI CCNNNNNNNGG 3 cut(s) 97, 535, 1151
AgsI TTSAA 3 cut(s) 689, 803, 958
AhdI GACNNNNNGTC 1 cut(s) 767
AhlI ACTAGT 1 cut(s) 139
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 5 cut(s) 152, 175, 750, 1008, 1278
AluI AGCT 5 cut(s) 152, 175, 750, 1008, 1278
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 562
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 6 cut(s) 220, 332, 653, 677, 793, 1026
ApeKI GCWGC 3 cut(s) 297, 1231, 1324
ApoI RAATTY 2 cut(s) 1014, 1098
AspLEI GCGC 2 cut(s) 302, 322
AspS9I GGNCC 3 cut(s) 221, 1076, 1222
AsuHPI GGTGA 3 cut(s) 202, 349, 605
AsuII TTCGAA 1 cut(s) 1102
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 1076, 1222
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 543
BauI CACGAG 1 cut(s) 1364
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 284, 1218, 1336
BccI CCATC 3 cut(s) 529, 937, 1262
BceAI ACGGC 1 cut(s) 1277
BciT130I CCWGG 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 775
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 3 cut(s) 140, 744, 843
BfmI CTRYAG 2 cut(s) 1107, 1232
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 4 cut(s) 298, 656, 1232, 1325
BlsI GCNGC 4 cut(s) 299, 657, 1233, 1326
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 2 cut(s) 1076, 1222
BmeRI GACNNNNNGTC 1 cut(s) 767
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 3 cut(s) 221, 1076, 1222
BmiI GGNNCC 5 cut(s) 540, 840, 948, 1035, 1267
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 926, 970
Bpu14I TTCGAA 1 cut(s) 1102
BpuEI CTTGAG 2 cut(s) 1056, 1300
BsaJI CCNNGG 2 cut(s) 1023, 1029
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 535, 1151
Bse3DI GCAATG 2 cut(s) 32, 1269
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 1023, 1029
BseGI GGATG 4 cut(s) 815, 882, 917, 948
BseLI CCNNNNNNNGG 3 cut(s) 97, 535, 1151
BseMI GCAATG 2 cut(s) 32, 1269
BseMII CTCAG 3 cut(s) 272, 661, 693
BseRI GAGGAG 2 cut(s) 742, 821
BseXI GCAGC 3 cut(s) 284, 1218, 1336
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 6 cut(s) 222, 334, 655, 679, 795, 1028
BshNI GGYRCC 1 cut(s) 1033
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 266, 1200
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 3 cut(s) 97, 535, 1151
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 6 cut(s) 222, 334, 655, 679, 795, 1028
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 1102
Bsp1286I GDGCHC 2 cut(s) 543, 708
Bsp143I GATC 5 cut(s) 204, 553, 619, 863, 1204
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 4 cut(s) 288, 340, 656, 836
BspANI GGCC 6 cut(s) 222, 334, 655, 679, 795, 1028
BspCNI CTCAG 3 cut(s) 273, 660, 694
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 5 cut(s) 540, 840, 948, 1035, 1267
BspMAI CTGCAG 1 cut(s) 1236
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 1322
BspT104I TTCGAA 1 cut(s) 1102
BspT107I GGYRCC 1 cut(s) 1033
BsrDI GCAATG 2 cut(s) 32, 1269
BssECI CCNNGG 2 cut(s) 1023, 1029
BssMI GATC 5 cut(s) 204, 553, 619, 863, 1204
BssSI CACGAG 1 cut(s) 1364
BssT1I CCWWGG 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 1364
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 1 cut(s) 1111
Bst6I CTCTTC 2 cut(s) 798, 1322
BstBI TTCGAA 1 cut(s) 1102
BstC8I GCNNGC 3 cut(s) 173, 1068, 1276
BstDEI CTNAG 7 cut(s) 62, 112, 167, 281, 647, 702, 1009
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 4 cut(s) 815, 882, 917, 948
BstFNI CGCG 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 2 cut(s) 302, 322
BstKTI GATC 5 cut(s) 207, 556, 622, 866, 1207
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 5 cut(s) 204, 553, 619, 863, 1204
BstMWI GCNNNNNNNGC 2 cut(s) 319, 1321
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 1 cut(s) 1331
BstSCI CCNGG 1 cut(s) 679
BstSFI CTRYAG 2 cut(s) 1107, 1232
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 284, 1218, 1336
BstXI CCANNNNNNTGG 1 cut(s) 832
BsuRI GGCC 6 cut(s) 222, 334, 655, 679, 795, 1028
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 4 cut(s) 815, 882, 917, 948
BtsI GCAGTG 2 cut(s) 706, 1310
BtsIMutI CAGTG 2 cut(s) 706, 1310
Cac8I GCNNGC 3 cut(s) 173, 1068, 1276
CaiI CAGNNNCTG 1 cut(s) 562
CciI TCATGA 1 cut(s) 366
CfoI GCGC 2 cut(s) 302, 322
Cfr13I GGNCC 3 cut(s) 221, 1076, 1222
Csp6I GTAC 3 cut(s) 285, 1237, 1369
CviAII CATG 3 cut(s) 367, 1030, 1328
CviQI GTAC 3 cut(s) 285, 1237, 1369
DdeI CTNAG 7 cut(s) 62, 112, 167, 281, 647, 702, 1009
DpnI GATC 5 cut(s) 206, 555, 621, 865, 1206
DpnII GATC 5 cut(s) 204, 553, 619, 863, 1204
DriI GACNNNNNGTC 1 cut(s) 767
Eam1104I CTCTTC 2 cut(s) 798, 1322
Eam1105I GACNNNNNGTC 1 cut(s) 767
EarI CTCTTC 2 cut(s) 798, 1322
EciI GGCGGA 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 1076, 1222
Eco57I CTGAAG 3 cut(s) 257, 884, 1290
Eco88I CYCGRG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 1 cut(s) 679
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 3 cut(s) 370, 1033, 1331
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 366, 1029, 1327
FauI CCCGC 1 cut(s) 347
FauNDI CATATG 2 cut(s) 475, 531
Fnu4HI GCNGC 4 cut(s) 298, 656, 1232, 1325
FokI GGATG 4 cut(s) 802, 889, 904, 955
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 4 cut(s) 298, 656, 1232, 1325
FspBI CTAG 3 cut(s) 140, 744, 843
FspI TGCGCA 1 cut(s) 301
GlaI GCGC 2 cut(s) 301, 321
GluI GCNGC 4 cut(s) 298, 656, 1232, 1325
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 6 cut(s) 222, 334, 655, 679, 795, 1028
HapII CCGG 2 cut(s) 266, 1200
HhaI GCGC 2 cut(s) 302, 322
Hin1II CATG 3 cut(s) 370, 1033, 1331
Hin6I GCGC 2 cut(s) 300, 320
HinP1I GCGC 2 cut(s) 300, 320
HindIII AAGCTT 1 cut(s) 1276
HinfI GANTC 4 cut(s) 354, 559, 732, 1085
HpaII CCGG 2 cut(s) 266, 1200
HphI GGTGA 3 cut(s) 202, 349, 605
Hpy166II GTNNAC 4 cut(s) 514, 526, 1239, 1369
Hpy188III TCNNGA 2 cut(s) 367, 782
Hpy8I GTNNAC 4 cut(s) 514, 526, 1239, 1369
HpyAV CCTTC 2 cut(s) 584, 1047
HpyCH4III ACNGT 1 cut(s) 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 319, 1321
HpyF3I CTNAG 7 cut(s) 62, 112, 167, 281, 647, 702, 1009
Hsp92II CATG 3 cut(s) 370, 1033, 1331
HspAI GCGC 2 cut(s) 300, 320
Kzo9I GATC 5 cut(s) 204, 553, 619, 863, 1204
LguI GCTCTTC 1 cut(s) 1322
LmnI GCTCC 4 cut(s) 538, 755, 838, 1265
Lsp1109I GCAGC 3 cut(s) 284, 1218, 1336
LweI GCATC 2 cut(s) 926, 970
MaeI CTAG 3 cut(s) 140, 744, 843
MaeIII GTNAC 2 cut(s) 409, 455
MalI GATC 5 cut(s) 206, 555, 621, 865, 1206
MboI GATC 5 cut(s) 204, 553, 619, 863, 1204
MfeI CAATTG 3 cut(s) 405, 912, 963
MhlI GDGCHC 2 cut(s) 543, 708
MlyI GAGTC 2 cut(s) 568, 726
MmeI TCCRAC 1 cut(s) 843
MseI TTAA 2 cut(s) 738, 1296
MslI CAYNNNNRTG 3 cut(s) 365, 941, 1364
MspI CCGG 2 cut(s) 266, 1200
MspR9I CCNGG 1 cut(s) 681
MunI CAATTG 3 cut(s) 405, 912, 963
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 319, 1321
NcoI CCATGG 1 cut(s) 1029
NdeI CATATG 2 cut(s) 475, 531
NdeII GATC 5 cut(s) 204, 553, 619, 863, 1204
NlaIII CATG 3 cut(s) 370, 1033, 1331
NlaIV GGNNCC 5 cut(s) 540, 840, 948, 1035, 1267
NmeAIII GCCGAG 1 cut(s) 198
NsbI TGCGCA 1 cut(s) 301
NspI RCATGY 1 cut(s) 1331
NspV TTCGAA 1 cut(s) 1102
PagI TCATGA 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 1322
PctI GAATGC 1 cut(s) 1068
PfeI GAWTC 2 cut(s) 354, 1085
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 4 cut(s) 299, 657, 1233, 1326
PleI GAGTC 2 cut(s) 567, 726
PpsI GAGTC 2 cut(s) 567, 726
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 5 cut(s) 540, 840, 948, 1035, 1267
PspPI GGNCC 3 cut(s) 221, 1076, 1222
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstI CTGCAG 1 cut(s) 1236
PstNI CAGNNNCTG 1 cut(s) 562
RsaI GTAC 3 cut(s) 286, 1238, 1370
RsaNI GTAC 3 cut(s) 285, 1237, 1369
RseI CAYNNNNRTG 3 cut(s) 365, 941, 1364
SapI GCTCTTC 1 cut(s) 1322
SaqAI TTAA 2 cut(s) 738, 1296
SatI GCNGC 4 cut(s) 298, 656, 1232, 1325
Sau3AI GATC 5 cut(s) 204, 553, 619, 863, 1204
Sau96I GGNCC 3 cut(s) 221, 1076, 1222
SchI GAGTC 2 cut(s) 568, 726
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 2 cut(s) 543, 708
SetI ASST 9 cut(s) 154, 177, 215, 391, 416, 595, 752, 1010, 1280
SfaNI GCATC 2 cut(s) 926, 970
SfcI CTRYAG 2 cut(s) 1107, 1232
SfuI TTCGAA 1 cut(s) 1102
SinI GGWCC 2 cut(s) 1076, 1222
SmiMI CAYNNNNRTG 3 cut(s) 365, 941, 1364
SmlI CTYRAG 2 cut(s) 1071, 1279
SmoI CTYRAG 2 cut(s) 1071, 1279
SpeI ACTAGT 1 cut(s) 139
SsiI CCGC 4 cut(s) 288, 340, 656, 836
SspI AATATT 1 cut(s) 1189
SspMI CTAG 3 cut(s) 140, 744, 843
StyD4I CCNGG 1 cut(s) 679
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 1 cut(s) 1111
TaqI TCGA 3 cut(s) 352, 760, 1102
TatI WGTACW 2 cut(s) 1236, 1368
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 2 cut(s) 354, 1085
Tru1I TTAA 2 cut(s) 738, 1296
Tru9I TTAA 2 cut(s) 738, 1296
TscAI CASTG 2 cut(s) 713, 1317
TseI GCWGC 3 cut(s) 297, 1231, 1324
TspRI CASTG 2 cut(s) 713, 1317
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 1076, 1222
XapI RAATTY 2 cut(s) 1014, 1098
XceI RCATGY 1 cut(s) 1331
XspI CTAG 3 cut(s) 140, 744, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.