Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Reverse (-)

30825157 .. 30827499

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G322300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCTCGGTATCTTATGGAATTGTACCGAGATAATTTGGAGTATAGTGGGGATGTGATGAGTGCAATAGTACCTTTGATGAAACTTTTGTCACTCACGGTCATTGGACTGGTTCTTTCACACCCAAAATCTCAAATGATTCCAAGAGCTACTTTTAAGCTACTCAGCAAGCTTGTTTTTGCCTTGTTCTTGCCATGTCTAATCTTTACTGAACTAGGCGAATCCATTACACTCAAAAACTTTGTTCAGTGGTGGTTTATCCCAGTTAATGTGCTAGTGAGTACACTTATTGGTTGTTTGCTTGGGTACTTAGTGGTGATCATATGTCGTCCGCCCGCAGAGTTAAACAGATTTACCATTATCATGACTGCATTTGGGAATACTGGAAATCTCCCACTTGCCGTTGTTGGATCTGTCTGTCATACTCCGAAGAACCCATTTGGACCCCATTGTCACTCTAGAGGGGTGGCTTATGTTTCTTTCGCCCAATGGGTTGCTGTAATTCTTGTTTATACCCTTGTTTACCACATGATGGAACCCCCATTGGAGTATTATGAGATTGTTGAAGAAGGGGTTGAGATTGACGAAACACAAACTAACGATATGAGTAGGCCTCTACTTGTAGAAGCTGAATGGCCTGGTATTGAAGAAAAAGAAACTGAGCATTCCAAGACACCCTTTATTGCTAGAGTTTTCAAAAGCATCTCAAGTGTTTCGCAGAGCACTTTGCAAGATGCTGATCTCTCAGGAGAAGGTGGTGGAAACAGTCCCAGGTCGATTAGGTGTTTGGCTGAACCTAGGGTGGTCAGGAGGATGAGAATTGTTGCTGAACAAACTCCAATACGGCACATACTGCAACCCCCAACAATTGCTTCTCTATTTGCCATCATTATTGGGACAGTGCCTCTGTTAAAGGCTTTTTTCTTCGGAGATGATGCTCCACTATCCTTCCTCACAGACAGCTTAGAGATTTTAGCTGGTGCAATGGTGCCTTCTGTAATGCTTATTCTTGGGGGTATGCTTGCAGAGGGGCCAAATGATTCTACTCTAGGGCTCCGAACTACTATTGGTATAACTGTGGCAAGGCTTTTATTGCTTCCTATGTTGGGCATTGGTATTGTGGCGTTGGCTGATAAGCTCAATTTTCTGGTTGATGGCGATGCAATGTACAGGTTTGTGCTTTTGATGCAGTACACGACACCAAGCGCAATTTTATTGGGAGCAATTGCGAGCTTGAGGGGTTATGCAGTAAGCGAGGCCTCAGCACTTCTCTTCTGGCAGCATGTGTTTGCCCTCTTCTCCCTTTCTTTGTATATTGTTATCTACTTTAAATTAGTAACATATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0022622 GO:0022857 GO:0023051 GO:0031224 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

450

Amino Acids

49.57

Weight (kDa)

5.8

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	988
AccB7I	CCANNNNNTGG	1 cut(s)	532
AciI	CCGC	2 cut(s)	332, 336
AclWI	GGATC	1 cut(s)	418
AfaI	GTAC	6 cut(s)	26, 72, 283, 308, 1169, 1193
AfiI	CCNNNNNNNGG	2 cut(s)	532, 1106
AgsI	TTSAA	3 cut(s)	566, 647, 697
AjnI	CCWGG	2 cut(s)	637, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	856, 888
AluBI	AGCT	8 cut(s)	149, 160, 172, 629, 963, 977, 1138, 1233
AluI	AGCT	8 cut(s)	149, 160, 172, 629, 963, 977, 1138, 1233
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	4 cut(s)	611, 635, 1031, 1257
ApeKI	GCWGC	1 cut(s)	1279
AspA2I	CCTAGG	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	1208
AspS9I	GGNCC	2 cut(s)	443, 1031
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	988
BanII	GRGCYC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	725
BbvCI	CCTCAGC	1 cut(s)	1261
BbvI	GCAGC	1 cut(s)	1291
BccI	CCATC	3 cut(s)	526, 893, 1148
BceAI	ACGGC	2 cut(s)	386, 860
BciT130I	CCWGG	2 cut(s)	639, 772
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	6 cut(s)	215, 275, 459, 687, 798, 1049
BisI	GCNGC	1 cut(s)	1280
BlnI	CCTAGG	1 cut(s)	797
BlsI	GCNGC	1 cut(s)	1281
Bme1390I	CCNGG	2 cut(s)	639, 772
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	443, 1031
BmiI	GGNNCC	5 cut(s)	445, 537, 990, 1032, 1055
BmrFI	CCNGG	2 cut(s)	639, 772
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	5 cut(s)	711, 724, 925, 1150, 1176
BmuI	ACTGGG	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
Bpu10I	CCTNAGC	1 cut(s)	1261
BpuEI	CTTGAG	2 cut(s)	691, 1255
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	770, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 1106
Bse1I	ACTGG	3 cut(s)	114, 263, 388
Bse3DI	GCAATG	2 cut(s)	990, 1170
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	639, 772
BseDI	CCNNGG	2 cut(s)	770, 797
BseGI	GGATG	2 cut(s)	58, 819
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	532, 1106
BseMI	GCAATG	2 cut(s)	990, 1170
BseMII	CTCAG	4 cut(s)	178, 651, 759, 1275
BseNI	ACTGG	3 cut(s)	114, 263, 388
BseXI	GCAGC	1 cut(s)	1291
BshFI	GGCC	4 cut(s)	613, 637, 1033, 1259
BshNI	GGYRCC	1 cut(s)	988
BsiHKAI	GWGCWC	1 cut(s)	725
BslFI	GGGAC	2 cut(s)	753, 910
BslI	CCNNNNNNNGG	2 cut(s)	532, 1106
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	753, 910
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	613, 637, 1033, 1259
Bsp1286I	GDGCHC	2 cut(s)	725, 1056
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	3 cut(s)	318, 410, 739
BspACI	CCGC	2 cut(s)	332, 336
BspANI	GGCC	4 cut(s)	613, 637, 1033, 1259
BspCNI	CTCAG	4 cut(s)	177, 652, 758, 1274
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	5 cut(s)	445, 537, 990, 1032, 1055
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	988
BsrDI	GCAATG	2 cut(s)	990, 1170
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	3 cut(s)	114, 263, 388
BssECI	CCNNGG	2 cut(s)	770, 797
BssMI	GATC	3 cut(s)	318, 410, 739
BssT1I	CCWWGG	1 cut(s)	797
Bst2UI	CCWGG	2 cut(s)	639, 772
Bst4CI	ACNGT	4 cut(s)	100, 767, 901, 1078
Bst6I	CTCTTC	2 cut(s)	1277, 1301
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstAUI	TGTACA	1 cut(s)	1167
BstC8I	GCNNGC	4 cut(s)	170, 336, 1023, 1231
BstDEI	CTNAG	6 cut(s)	164, 310, 660, 745, 964, 1261
BstF5I	GGATG	2 cut(s)	58, 819
BstHHI	GCGC	1 cut(s)	1208
BstKTI	GATC	3 cut(s)	321, 413, 742
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	318, 410, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
BstNI	CCWGG	2 cut(s)	639, 772
BstNSI	RCATGY	1 cut(s)	1286
BstSCI	CCNGG	2 cut(s)	637, 770
BstV1I	GCAGC	1 cut(s)	1291
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	613, 637, 1033, 1259
BtgZI	GCGATG	1 cut(s)	1173
BtsCI	GGATG	2 cut(s)	58, 819
BtsIMutI	CAGTG	2 cut(s)	254, 906
Cac8I	GCNNGC	4 cut(s)	170, 336, 1023, 1231
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	1208
Cfr13I	GGNCC	2 cut(s)	443, 1031
Csp6I	GTAC	6 cut(s)	25, 71, 282, 307, 1168, 1192
CviAII	CATG	4 cut(s)	195, 364, 529, 1283
CviQI	GTAC	6 cut(s)	25, 71, 282, 307, 1168, 1192
DdeI	CTNAG	6 cut(s)	164, 310, 660, 745, 964, 1261
DpnI	GATC	3 cut(s)	320, 412, 741
DpnII	GATC	3 cut(s)	318, 410, 739
DraI	TTTAAA	1 cut(s)	1330
DrdI	GACNNNNNNGTC	1 cut(s)	450
DseDI	GACNNNNNNGTC	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	1277, 1301
EarI	CTCTTC	2 cut(s)	1277, 1301
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	797
Eco147I	AGGCCT	2 cut(s)	613, 1259
Eco24I	GRGCYC	1 cut(s)	1056
Eco47I	GGWCC	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	637, 770
EcoT14I	CCWWGG	1 cut(s)	797
EcoT38I	GRGCYC	1 cut(s)	1056
ErhI	CCWWGG	1 cut(s)	797
FaeI	CATG	4 cut(s)	198, 367, 532, 1286
FalI	AAGNNNNNCTT	4 cut(s)	136, 168, 662, 694
FaqI	GGGAC	2 cut(s)	753, 910
FatI	CATG	4 cut(s)	194, 363, 528, 1282
FauI	CCCGC	1 cut(s)	343
FauNDI	CATATG	2 cut(s)	323, 1342
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	1280
FokI	GGATG	2 cut(s)	65, 826
FriOI	GRGCYC	1 cut(s)	1056
Fsp4HI	GCNGC	1 cut(s)	1280
FspBI	CTAG	6 cut(s)	215, 275, 459, 687, 798, 1049
GlaI	GCGC	1 cut(s)	1207
GluI	GCNGC	1 cut(s)	1280
HaeIII	GGCC	4 cut(s)	613, 637, 1033, 1259
HhaI	GCGC	1 cut(s)	1208
Hin1II	CATG	4 cut(s)	198, 367, 532, 1286
Hin6I	GCGC	1 cut(s)	1206
HinP1I	GCGC	1 cut(s)	1206
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	139, 221, 1040
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	284, 523, 1194
Hpy188I	TCNGA	4 cut(s)	429, 929, 1058, 1349
Hpy188III	TCNNGA	4 cut(s)	364, 459, 747, 808
Hpy8I	GTNNAC	3 cut(s)	284, 523, 1194
HpyAV	CCTTC	4 cut(s)	563, 746, 958, 1002
HpyCH4III	ACNGT	4 cut(s)	100, 767, 901, 1078
HpyCH4V	TGCA	9 cut(s)	65, 371, 730, 856, 983, 1025, 1163, 1189, 1247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
HpyF3I	CTNAG	6 cut(s)	164, 310, 660, 745, 964, 1261
Hsp92II	CATG	4 cut(s)	198, 367, 532, 1286
HspAI	GCGC	1 cut(s)	1206
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	318, 410, 739
LmnI	GCTCC	3 cut(s)	943, 1059, 1220
Lsp1109I	GCAGC	1 cut(s)	1291
LweI	GCATC	5 cut(s)	711, 724, 925, 1150, 1176
MaeI	CTAG	6 cut(s)	215, 275, 459, 687, 798, 1049
MaeIII	GTNAC	3 cut(s)	90, 452, 1336
MalI	GATC	3 cut(s)	320, 412, 741
MboI	GATC	3 cut(s)	318, 410, 739
MboII	GAAGA	6 cut(s)	442, 578, 659, 916, 1264, 1288
MfeI	CAATTG	2 cut(s)	867, 1224
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	725, 1056
MluCI	AATT	9 cut(s)	20, 34, 501, 819, 867, 1141, 1209, 1224, 1331
MmeI	TCCRAC	1 cut(s)	388
MseI	TTAA	5 cut(s)	156, 267, 344, 911, 1329
MslI	CAYNNNNRTG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	639, 772
MunI	CAATTG	2 cut(s)	867, 1224
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	2 cut(s)	639, 772
MwoI	GCNNNNNNNGC	3 cut(s)	853, 1093, 1186
NdeI	CATATG	2 cut(s)	323, 1342
NdeII	GATC	3 cut(s)	318, 410, 739
NlaIII	CATG	4 cut(s)	198, 367, 532, 1286
NlaIV	GGNNCC	5 cut(s)	445, 537, 990, 1032, 1055
NmuCI	GTSAC	2 cut(s)	90, 452
NspI	RCATGY	1 cut(s)	1286
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	2 cut(s)	613, 1259
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	139, 221, 1040
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	1281
Psp6I	CCWGG	2 cut(s)	637, 770
PspGI	CCWGG	2 cut(s)	637, 770
PspN4I	GGNNCC	5 cut(s)	445, 537, 990, 1032, 1055
PspPI	GGNCC	2 cut(s)	443, 1031
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	6 cut(s)	26, 72, 283, 308, 1169, 1193
RsaNI	GTAC	6 cut(s)	25, 71, 282, 307, 1168, 1192
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	5 cut(s)	156, 267, 344, 911, 1329
SatI	GCNGC	1 cut(s)	1280
Sau3AI	GATC	3 cut(s)	318, 410, 739
Sau96I	GGNCC	2 cut(s)	443, 1031
ScrFI	CCNGG	2 cut(s)	639, 772
SduI	GDGCHC	2 cut(s)	725, 1056
SfaNI	GCATC	5 cut(s)	711, 724, 925, 1150, 1176
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	706, 1234
SmoI	CTYRAG	2 cut(s)	706, 1234
Sse9I	AATT	9 cut(s)	20, 34, 501, 819, 867, 1141, 1209, 1224, 1331
SseBI	AGGCCT	2 cut(s)	613, 1259
SsiI	CCGC	2 cut(s)	332, 336
SspMI	CTAG	6 cut(s)	215, 275, 459, 687, 798, 1049
StuI	AGGCCT	2 cut(s)	613, 1259
StyD4I	CCNGG	2 cut(s)	637, 770
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	4 cut(s)	100, 767, 901, 1078
TaqI	TCGA	1 cut(s)	776
TasI	AATT	9 cut(s)	20, 34, 501, 819, 867, 1141, 1209, 1224, 1331
TatI	WGTACW	3 cut(s)	281, 1167, 1191
TfiI	GAWTC	3 cut(s)	139, 221, 1040
Tru1I	TTAA	5 cut(s)	156, 267, 344, 911, 1329
Tru9I	TTAA	5 cut(s)	156, 267, 344, 911, 1329
TscAI	CASTG	2 cut(s)	254, 906
TseFI	GTSAC	2 cut(s)	90, 452
TseI	GCWGC	1 cut(s)	1279
Tsp45I	GTSAC	2 cut(s)	90, 452
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	254, 906
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	1286
XmaJI	CCTAGG	1 cut(s)	797
XspI	CTAG	6 cut(s)	215, 275, 459, 687, 798, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.