Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002715

Physical Location & Seq

Genomic Coordinates Forward (+)

25489247 .. 25490938

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGTGTCACACCATTGATAGAGAAGCTTGAGAAGGAGAAGCTCAAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCTGATAGTGACGATGACGACGAGCGGTTCAGTCCCGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCATGCGACATGAGGAATTGCTCAAGAATTTCACACAGGCTGAGACGCTTGATGATGCTTTTAAATGGATGAATAAAATTGACAAGTTTGAGCAAAAACATTTCTGGCTTTGCCCTGAATATAGAGTCATTGGTGAATTGATGAACCGTCTAAAAGTAGCTGAGGGCAAGGATAAATTCATTCTGCAGCACAAACTAAACAGGGCTATGCGACTGGTGCAATGGAAGGATGCCTATGATCCAAATGATCCTGCCAACTATGGAGTCATTCAGGAACAACTGGAGCCCTCATTTGATCTTCTAGAAGATGCTGGATTTGAAAAAAAAAAAAATCATTCGAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

169

Amino Acids

20.17

Weight (kDa)

5.36

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71090
fragaria_vesca	FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_1g29070 FvH4_4g32170 FvH4_4g32170 FvH4_4g32170
malus_domestica	MD13G1027800.v1.1 MD16G1030900.v1.1 MD17G1281100.v1.1
prunus_persica	Prupe.1G322300_v2.0.a1 Prupe.1G322300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1 Prupe.3G151300_v2.0.a1
pyrus_communis	pycom13g02630 pycom17g25670 pycom17g27880
rosa_chinensis	RchiOBHm_Chr3g0493591 RchiOBHm_Chr4g0440881
rosa_laevigata	RLG00000006141 RLG00000022701
rosa_multiflora	Rmu_sc0000568.1_g000007 Rmu_sc0005054.1_g000009
rosa_roxburghii	Rroxscaffold_5G00381740 Rroxscaffold_6G00391430
rosa_rugosa	Rorug03G0263000 Rorug04G0329200
rosa_samantha	Rh3BG347800 Rh3CG345600 Rh3DG347900 Rh4AG380900 Rh4BG394000 Rh4CG408800 Rh4DG387400
rosa_wichuraiana	Rw3G027360 Rw4G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	66, 395, 404
AcsI	RAATTY	2 cut(s)	190, 338
AgsI	TTSAA	1 cut(s)	482
AluBI	AGCT	3 cut(s)	28, 43, 323
AluI	AGCT	3 cut(s)	28, 43, 323
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	66, 395, 404
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	2 cut(s)	190, 338
AsuHPI	GGTGA	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	81, 450
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	78, 447
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	4 cut(s)	115, 208, 382, 460
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	3 cut(s)	29, 50, 170
Bse1I	ACTGG	3 cut(s)	58, 381, 447
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	237, 397
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	195, 315
BseNI	ACTGG	3 cut(s)	58, 381, 447
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	81, 450
Bsp143I	GATC	4 cut(s)	58, 400, 409, 457
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	196, 316
BspLI	GGNNCC	2 cut(s)	78, 447
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	3 cut(s)	66, 395, 404
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	58, 381, 447
BssMI	GATC	4 cut(s)	58, 400, 409, 457
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	204, 324
BstF5I	GGATG	2 cut(s)	237, 397
BstKTI	GATC	4 cut(s)	61, 403, 412, 460
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	58, 400, 409, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	237, 397
BtsIMutI	CAGTG	1 cut(s)	51
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	166, 173
CviJI	RGCY	8 cut(s)	28, 43, 79, 203, 271, 323, 368, 448
CviKI_1	RGCY	8 cut(s)	28, 43, 79, 203, 271, 323, 368, 448
DdeI	CTNAG	2 cut(s)	204, 324
DpnI	GATC	4 cut(s)	60, 402, 411, 459
DpnII	GATC	4 cut(s)	58, 400, 409, 457
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco24I	GRGCYC	2 cut(s)	81, 450
EcoT38I	GRGCYC	2 cut(s)	81, 450
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	2 cut(s)	169, 176
FaiI	YATR	7 cut(s)	72, 167, 174, 285, 371, 399, 423
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	165, 172
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	244, 404
FriOI	GRGCYC	2 cut(s)	81, 450
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	464
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	169, 176
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	86, 288, 426
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	91, 156
Hpy188III	TCNNGA	6 cut(s)	46, 122, 133, 187, 434, 464
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	28, 382
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	349, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	204, 324
Hsp92II	CATG	2 cut(s)	169, 176
Kzo9I	GATC	4 cut(s)	58, 400, 409, 457
LmnI	GCTCC	2 cut(s)	76, 445
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	4 cut(s)	115, 208, 382, 460
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	2 cut(s)	7, 95
MalI	GATC	4 cut(s)	60, 402, 411, 459
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	58, 400, 409, 457
MboII	GAAGA	3 cut(s)	148, 452, 479
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	81, 450
MluCI	AATT	6 cut(s)	64, 179, 190, 240, 299, 338
MlyI	GAGTC	2 cut(s)	297, 435
MnlI	CCTC	7 cut(s)	67, 132, 150, 169, 319, 460, 495
MseI	TTAA	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	4 cut(s)	58, 400, 409, 457
NlaIII	CATG	2 cut(s)	169, 176
NlaIV	GGNNCC	2 cut(s)	78, 447
NmuCI	GTSAC	2 cut(s)	7, 95
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	2 cut(s)	296, 434
PpsI	GAGTC	2 cut(s)	296, 434
PspN4I	GGNNCC	2 cut(s)	78, 447
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	58, 400, 409, 457
SchI	GAGTC	2 cut(s)	297, 435
SduI	GDGCHC	2 cut(s)	81, 450
SetI	ASST	3 cut(s)	30, 45, 325
SfaNI	GCATC	4 cut(s)	115, 208, 382, 460
SfcI	CTRYAG	1 cut(s)	347
SmlI	CTYRAG	3 cut(s)	29, 44, 185
SmoI	CTYRAG	3 cut(s)	29, 44, 185
Sse9I	AATT	6 cut(s)	64, 179, 190, 240, 299, 338
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	500
TasI	AATT	6 cut(s)	64, 179, 190, 240, 299, 338
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	7, 95
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	2 cut(s)	7, 95
TspDTI	ATGAA	4 cut(s)	154, 248, 320, 331
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	2 cut(s)	190, 338
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.