FvH4_1g20420

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005658
Physical Location & Seq
Reverse (-)
12640751 .. 12642014
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20420.t1

Sequence Viewer

Length: 867 bp
ATGTTGGATAGTAACAGTCTCGCCGAACACCAACGCCATCTAACTTTGATCCGACCAAAATATTACACTTACAACCAAATCGATCAAACCCAGTTAAACCCTCTTCTTCCTTCCACCAATCCCACCATGGAAACCGGATTCTTCAGCTCCTCAATCCTAACCCAAGACGAGCTCAAGAAAATCGCGGCCTACAAGGCCGTGGATCAGCACGTCGAGTCCGGCATGATCCTCGGCCTCGGCTCCGGCTCCACCGTCAAGCACGCCGTCGACCGCATCGGCGAGCTTCTCCAACTCGGAAAGCTCCACAACATCATCGGAATCACCACCTCCCAAAACACCCACCAACAAGCCCTCTCTCTCGGCATCCCTCTCTCCGACCTCGACGTCCACCCCGTCCTCGACCTCGCCATCGACGGCGCCGACGAGGTCGACCCTCACCTCAACCTCGTCAAGGGCCGCTGTGGGTCCCTCTTAAGAGAGAAAATGGTCGAGGGCGCGTGTAAGAAGTTCGTCGTCATTGTCGACGAGTCAAAGCTCGTTGACCACCTTGGGGGGTCCGGGATGGCCATGCCAGTGGAGGTTGTGCCGTTCTGCTGGAAGTTCACGGCCAAAATGCTGCAGGATTTGTTTAGGGAATCCGGTTGCGTTGCGAAGCTGAAATGTGAGGAGGAGAGCGGGGAGGCGTTTGTGACTGATAATGGGAACTACATTGTGGATTTGTACTTCAAGAAGGATATTGGGGACTTGAGGGCTGCTAGTGAGGCCGTTTTGCGGCTCGCCGGAGTTGTGGAGCATGGGATGTTTCTAGATATGGCCACTACTGTGATCGTGGCGAGGGAGCTTGGGATAACGGTGAAGCACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

289

Amino Acids

31.59

Weight (kDa)

5.65

Isoelectric Point (pI)

27.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 106 - 280 2.5e-58 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 675
AccI GTMKAC 3 cut(s) 267, 429, 522
AccII CGCG 2 cut(s) 185, 497
AciI CCGC 5 cut(s) 185, 271, 457, 675, 772
AclWI GGATC 3 cut(s) 43, 210, 220
AcoI YGGCCR 3 cut(s) 564, 606, 813
AcuI CTGAAG 1 cut(s) 127
AcyI GRCGYC 2 cut(s) 384, 417
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 3 cut(s) 451, 550, 771
AflII CTTAAG 1 cut(s) 472
AgsI TTSAA 1 cut(s) 727
AjiI CACGTC 1 cut(s) 211
AleI CACNNNNGTG 1 cut(s) 821
AluBI AGCT 7 cut(s) 147, 172, 283, 301, 535, 655, 841
AluI AGCT 7 cut(s) 147, 172, 283, 301, 535, 655, 841
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 3 cut(s) 43, 210, 220
AoxI GGCC 8 cut(s) 186, 195, 232, 454, 564, 606, 762, 813
ApeKI GCWGC 2 cut(s) 616, 752
AspLEI GCGC 2 cut(s) 419, 497
AspS9I GGNCC 3 cut(s) 454, 465, 555
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 313, 428, 865
AvaII GGWCC 2 cut(s) 465, 555
BalI TGGCCA 2 cut(s) 566, 815
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 603, 739
BccI CCATC 3 cut(s) 45, 416, 556
BceAI ACGGC 6 cut(s) 182, 248, 430, 571, 621, 749
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 756, 806
BfmI CTRYAG 1 cut(s) 617
BfoI RGCGCY 1 cut(s) 420
BfrI CTTAAG 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 5 cut(s) 186, 457, 617, 753, 773
BlsI GCNGC 5 cut(s) 187, 458, 618, 754, 774
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 465, 555
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 454, 465, 555
BmiI GGNNCC 6 cut(s) 241, 247, 418, 466, 467, 556
BmrFI CCNGG 1 cut(s) 559
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 282, 372
BmuI ACTGGG 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 158, 766
BpuMI CCSGG 1 cut(s) 559
Bsa29I ATCGAT 1 cut(s) 81
BsaHI GRCGYC 2 cut(s) 384, 417
BsaJI CCNNGG 5 cut(s) 126, 198, 229, 235, 547
BsaWI WCCGGW 2 cut(s) 134, 638
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 550, 771
Bse1I ACTGG 2 cut(s) 91, 572
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 5 cut(s) 126, 198, 229, 235, 547
BseGI GGATG 3 cut(s) 363, 567, 804
BseLI CCNNNNNNNGG 3 cut(s) 451, 550, 771
BseNI ACTGG 2 cut(s) 91, 572
BseRI GAGGAG 3 cut(s) 139, 680, 683
BseXI GCAGC 2 cut(s) 603, 739
Bsh1236I CGCG 2 cut(s) 185, 497
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 8 cut(s) 188, 197, 234, 456, 566, 608, 764, 815
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 6 cut(s) 135, 219, 243, 558, 639, 780
BslFI GGGAC 2 cut(s) 451, 755
BslI CCNNNNNNNGG 3 cut(s) 451, 550, 771
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 451, 755
BsnI GGCC 8 cut(s) 188, 197, 234, 456, 566, 608, 764, 815
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 5 cut(s) 48, 82, 202, 225, 825
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 5 cut(s) 185, 271, 457, 675, 772
BspANI GGCC 8 cut(s) 188, 197, 234, 456, 566, 608, 764, 815
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 2 cut(s) 185, 497
BspLI GGNNCC 6 cut(s) 241, 247, 418, 466, 467, 556
BspMAI CTGCAG 1 cut(s) 621
BspPI GGATC 3 cut(s) 43, 210, 220
BspT107I GGYRCC 1 cut(s) 416
BspTI CTTAAG 1 cut(s) 472
BsrBI CCGCTC 1 cut(s) 675
BsrI ACTGG 2 cut(s) 91, 572
BssECI CCNNGG 5 cut(s) 126, 198, 229, 235, 547
BssMI GATC 5 cut(s) 48, 82, 202, 225, 825
BssNI GRCGYC 2 cut(s) 384, 417
BssT1I CCWWGG 2 cut(s) 126, 547
Bst4CI ACNGT 4 cut(s) 17, 253, 823, 853
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 2 cut(s) 384, 417
BstAFI CTTAAG 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 261, 281, 777
BstDSI CCRYGG 2 cut(s) 126, 198
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 3 cut(s) 363, 567, 804
BstFNI CGCG 2 cut(s) 185, 497
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 2 cut(s) 419, 497
BstKTI GATC 5 cut(s) 51, 85, 205, 228, 828
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 48, 82, 202, 225, 825
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 194, 761
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 617
BstUI CGCG 2 cut(s) 185, 497
BstV1I GCAGC 2 cut(s) 603, 739
BstXI CCANNNNNNTGG 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 8 cut(s) 188, 197, 234, 456, 566, 608, 764, 815
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 2 cut(s) 126, 198
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 363, 567, 804
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 261, 281, 777
CfoI GCGC 2 cut(s) 419, 497
Cfr13I GGNCC 3 cut(s) 454, 465, 555
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 721
CviAII CATG 4 cut(s) 127, 223, 568, 794
CviQI GTAC 1 cut(s) 721
DinI GGCGCC 1 cut(s) 418
DpnI GATC 5 cut(s) 50, 84, 204, 227, 827
DpnII GATC 5 cut(s) 48, 82, 202, 225, 825
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 564, 606, 813
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 126, 547
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 465, 555
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 126, 547
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
ErhI CCWWGG 2 cut(s) 126, 547
FaeI CATG 4 cut(s) 130, 226, 571, 797
FaiI YATR 5 cut(s) 128, 224, 569, 795, 812
FaqI GGGAC 2 cut(s) 451, 755
FatI CATG 4 cut(s) 126, 222, 567, 793
FauI CCCGC 1 cut(s) 668
FblI GTMKAC 3 cut(s) 267, 429, 522
Fnu4HI GCNGC 5 cut(s) 186, 457, 617, 753, 773
FokI GGATG 3 cut(s) 350, 574, 811
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 5 cut(s) 186, 457, 617, 753, 773
FspBI CTAG 2 cut(s) 756, 806
GlaI GCGC 2 cut(s) 418, 496
GluI GCNGC 5 cut(s) 186, 457, 617, 753, 773
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 8 cut(s) 188, 197, 234, 456, 566, 608, 764, 815
HapII CCGG 6 cut(s) 135, 219, 243, 558, 639, 780
HhaI GCGC 2 cut(s) 419, 497
Hin1I GRCGYC 2 cut(s) 384, 417
Hin1II CATG 4 cut(s) 130, 226, 571, 797
Hin6I GCGC 2 cut(s) 417, 495
HinP1I GCGC 2 cut(s) 417, 495
HincII GTYRAC 4 cut(s) 268, 430, 523, 541
HindII GTYRAC 4 cut(s) 268, 430, 523, 541
HinfI GANTC 5 cut(s) 138, 215, 318, 527, 635
HpaII CCGG 6 cut(s) 135, 219, 243, 558, 639, 780
HphI GGTGA 3 cut(s) 313, 428, 865
Hpy166II GTNNAC 6 cut(s) 268, 388, 430, 523, 541, 603
Hpy188I TCNGA 4 cut(s) 53, 296, 317, 376
Hpy188III TCNNGA 3 cut(s) 175, 727, 806
Hpy8I GTNNAC 6 cut(s) 268, 388, 430, 523, 541, 603
Hpy99I CGWCG 7 cut(s) 215, 269, 386, 416, 425, 515, 527
HpyAV CCTTC 2 cut(s) 120, 724
HpyCH4III ACNGT 4 cut(s) 17, 253, 823, 853
HpyCH4IV ACGT 2 cut(s) 210, 384
HpyCH4V TGCA 1 cut(s) 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 761
HpySE526I ACGT 2 cut(s) 210, 384
Hsp92I GRCGYC 2 cut(s) 384, 417
Hsp92II CATG 4 cut(s) 130, 226, 571, 797
HspAI GCGC 2 cut(s) 417, 495
KasI GGCGCC 1 cut(s) 416
KflI GGGWCCC 1 cut(s) 465
Kzo9I GATC 5 cut(s) 48, 82, 202, 225, 825
LmnI GCTCC 6 cut(s) 152, 245, 251, 306, 790, 838
Lsp1109I GCAGC 2 cut(s) 603, 739
LweI GCATC 2 cut(s) 282, 372
MaeI CTAG 2 cut(s) 756, 806
MaeII ACGT 2 cut(s) 210, 384
MaeIII GTNAC 2 cut(s) 11, 688
MalI GATC 5 cut(s) 50, 84, 204, 227, 827
MbiI CCGCTC 1 cut(s) 675
MboI GATC 5 cut(s) 48, 82, 202, 225, 825
MboII GAAGA 3 cut(s) 95, 98, 133
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 2 cut(s) 566, 815
MluNI TGGCCA 2 cut(s) 566, 815
Mly113I GGCGCC 1 cut(s) 417
MlyI GAGTC 2 cut(s) 224, 536
MmeI TCCRAC 3 cut(s) 76, 313, 399
Mox20I TGGCCA 2 cut(s) 566, 815
MscI TGGCCA 2 cut(s) 566, 815
MseI TTAA 2 cut(s) 95, 473
MslI CAYNNNNRTG 2 cut(s) 572, 821
Msp20I TGGCCA 2 cut(s) 566, 815
MspA1I CMGCKG 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 472
MspI CCGG 6 cut(s) 135, 219, 243, 558, 639, 780
MspR9I CCNGG 1 cut(s) 559
MvnI CGCG 2 cut(s) 185, 497
MwoI GCNNNNNNNGC 2 cut(s) 194, 761
NarI GGCGCC 1 cut(s) 417
NciI CCSGG 1 cut(s) 559
NcoI CCATGG 1 cut(s) 126
NdeII GATC 5 cut(s) 48, 82, 202, 225, 825
NlaIII CATG 4 cut(s) 130, 226, 571, 797
NlaIV GGNNCC 6 cut(s) 241, 247, 418, 466, 467, 556
NmeAIII GCCGAG 3 cut(s) 210, 216, 339
NmuCI GTSAC 1 cut(s) 688
OliI CACNNNNGTG 1 cut(s) 821
PcsI WCGNNNNNNNCGW 4 cut(s) 390, 417, 420, 519
PfeI GAWTC 3 cut(s) 138, 318, 635
PflFI GACNNNGTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 557
PkrI GCNGC 5 cut(s) 187, 458, 618, 754, 774
PleI GAGTC 2 cut(s) 223, 535
PluTI GGCGCC 1 cut(s) 420
PpsI GAGTC 2 cut(s) 223, 535
PpuMI RGGWCCY 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 465
PspN4I GGNNCC 6 cut(s) 241, 247, 418, 466, 467, 556
PspPI GGNCC 3 cut(s) 454, 465, 555
PspPPI RGGWCCY 1 cut(s) 465
PstI CTGCAG 1 cut(s) 621
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 2 cut(s) 572, 821
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 3 cut(s) 266, 428, 521
SaqAI TTAA 2 cut(s) 95, 473
SatI GCNGC 5 cut(s) 186, 457, 617, 753, 773
Sau3AI GATC 5 cut(s) 48, 82, 202, 225, 825
Sau96I GGNCC 3 cut(s) 454, 465, 555
SchI GAGTC 2 cut(s) 224, 536
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 2 cut(s) 282, 372
SfcI CTRYAG 1 cut(s) 617
SfiI GGCCNNNNNGGCC 1 cut(s) 194
SfoI GGCGCC 1 cut(s) 418
SinI GGWCC 2 cut(s) 465, 555
SmiMI CAYNNNNRTG 2 cut(s) 572, 821
SmlI CTYRAG 3 cut(s) 173, 472, 745
SmoI CTYRAG 3 cut(s) 173, 472, 745
SsiI CCGC 5 cut(s) 185, 271, 457, 675, 772
SspDI GGCGCC 1 cut(s) 416
SspI AATATT 1 cut(s) 62
SspMI CTAG 2 cut(s) 756, 806
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 557
StyI CCWWGG 2 cut(s) 126, 547
TaaI ACNGT 4 cut(s) 17, 253, 823, 853
TaiI ACGT 2 cut(s) 213, 387
TaqI TCGA 9 cut(s) 81, 213, 267, 381, 399, 411, 429, 489, 522
TatI WGTACW 1 cut(s) 720
TauI GCSGC 3 cut(s) 188, 459, 775
TfiI GAWTC 3 cut(s) 138, 318, 635
Tru1I TTAA 2 cut(s) 95, 473
Tru9I TTAA 2 cut(s) 95, 473
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 616, 752
Tsp45I GTSAC 1 cut(s) 688
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 465, 555
XagI CCTNNNNNAGG 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 3 cut(s) 267, 429, 522
XspI CTAG 2 cut(s) 756, 806
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.