Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000424.1

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Reverse (-)

70185 .. 73150

Gene Structure 2966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000424.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggaaggtgcaatcttggtctctgcgccgtcctctcctctatcttcaacttctcttctctctgtgactctaacccaagatgagctgaagaaaatcgcggcctacaaggccgtcgagtacgtcgagtccggcatggttctcggcctcggcaccggctccacggccaagcacgccgtcgatcgaatcggcgatctcctccgccaggggaagctccacaacattgtcggaatacccacctccagaaagacccacgagcaagctgtctccgtcggaatcccactcgccgacctcgactcccatcccgtcatcgatctcgccatcgacggcgccgacgaggtggacccccacctgaacctggtcaagggccgaggtgggtcgctgctgagagagaagatggtggagggtgcctgccggaaatttgtggtcattgtcgatgagtccaagcttgtgaagcatttgggtggtagtgggctggctatgccggtggaggttgtgccgttttgctggaaattcactgccaggaggctccagaacttgtttgaggattcgggttgtgttgcgaagctgaggacttcctcgggggcaaatggtgagccttatgtgacagacaatgggaactacattgtggacctgtatttcaaggaggacattggggatttgaaggccgcgagtgatgtgattttgcagcttgctggagttgtggagcatgggatgttcctggacatggccaccactgtgattgttgcaggagagatgggcataacgcttgaactcaagtcagacaaatttagccaaggggatcaaactctgggggctgtggagaaatggaatctgggagactatacaatcctcagggcctgcgagccttgcacctcaaggcgcagggcgtccttgttttggcagctaaaaggacgaagatgcaagatatttttagtggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

313

Amino Acids

33.83

Weight (kDa)

6.01

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	149, 326, 404
AccII	CGCG	2 cut(s)	98, 668
AciI	CCGC	3 cut(s)	98, 199, 666
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	2 cut(s)	162, 726
AcsI	RAATTY	3 cut(s)	416, 509, 785
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	327, 887
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	5 cut(s)	202, 355, 361, 724, 897
AgsI	TTSAA	4 cut(s)	48, 640, 661, 770
AjnI	CCWGG	4 cut(s)	201, 354, 518, 717
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	7 cut(s)	85, 211, 260, 445, 565, 688, 904
AluI	AGCT	7 cut(s)	85, 211, 260, 445, 565, 688, 904
Alw26I	GTCTC	3 cut(s)	25, 268, 831
AlwI	GGATC	1 cut(s)	807
AlwNI	CAGNNNCTG	1 cut(s)	858
Ama87I	CYCGRG	1 cut(s)	577
AoxI	GGCC	8 cut(s)	99, 108, 142, 162, 364, 663, 726, 855
ApeKI	GCWGC	3 cut(s)	379, 685, 901
ApoI	RAATTY	3 cut(s)	416, 509, 785
AspLEI	GCGC	3 cut(s)	28, 329, 882
AspS9I	GGNCC	4 cut(s)	340, 364, 628, 855
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	577
AvaII	GGWCC	2 cut(s)	340, 628
AxyI	CCTNAGG	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	3 cut(s)	149, 326, 404
BauI	CACGAG	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	366, 697, 913
BccI	CCATC	4 cut(s)	306, 326, 388, 748
BceAI	ACGGC	6 cut(s)	13, 95, 158, 177, 340, 481
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	4 cut(s)	203, 356, 520, 719
BcoDI	GTCTC	3 cut(s)	25, 268, 831
BfoI	RGCGCY	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	5 cut(s)	99, 380, 666, 686, 902
BlsI	GCNGC	5 cut(s)	100, 381, 667, 687, 903
Bme1390I	CCNGG	4 cut(s)	203, 356, 520, 719
Bme18I	GGWCC	2 cut(s)	340, 628
BmeT110I	CYCGRG	1 cut(s)	577
BmgT120I	GGNCC	4 cut(s)	340, 364, 628, 855
BmiI	GGNNCC	6 cut(s)	151, 157, 328, 342, 406, 527
BmrFI	CCNGG	4 cut(s)	203, 356, 520, 719
BmsI	GCATC	1 cut(s)	908
BpmI	CTGGAG	3 cut(s)	223, 512, 714
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	758, 859
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	2 cut(s)	327, 887
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	6 cut(s)	145, 159, 202, 367, 576, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 355, 361, 724, 897
Bse118I	RCCGGY	2 cut(s)	152, 481
Bse21I	CCTNAGG	1 cut(s)	851
BseBI	CCWGG	4 cut(s)	203, 356, 520, 719
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	6 cut(s)	145, 159, 202, 367, 576, 793
BseGI	GGATG	2 cut(s)	298, 717
BseLI	CCNNNNNNNGG	5 cut(s)	202, 355, 361, 724, 897
BseMII	CTCAG	3 cut(s)	374, 557, 865
BseRI	GAGGAG	2 cut(s)	27, 185
BseXI	GCAGC	3 cut(s)	366, 697, 913
Bsh1236I	CGCG	2 cut(s)	98, 668
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	8 cut(s)	101, 110, 144, 164, 366, 665, 728, 857
BshNI	GGYRCC	3 cut(s)	149, 326, 404
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	577
BsiSI	CCGG	4 cut(s)	129, 153, 412, 482
BslI	CCNNNNNNNGG	5 cut(s)	202, 355, 361, 724, 897
BsmAI	GTCTC	3 cut(s)	25, 268, 831
BsnI	GGCC	8 cut(s)	101, 110, 144, 164, 366, 665, 728, 857
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	178, 190, 310, 799
BspACI	CCGC	3 cut(s)	98, 199, 666
BspANI	GGCC	8 cut(s)	101, 110, 144, 164, 366, 665, 728, 857
BspCNI	CTCAG	3 cut(s)	375, 558, 864
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	98, 668
BspLI	GGNNCC	6 cut(s)	151, 157, 328, 342, 406, 527
BspPI	GGATC	1 cut(s)	807
BspT107I	GGYRCC	3 cut(s)	149, 326, 404
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	152, 481
BssAI	RCCGGY	2 cut(s)	152, 481
BssECI	CCNNGG	6 cut(s)	145, 159, 202, 367, 576, 793
BssMI	GATC	4 cut(s)	178, 190, 310, 799
BssNI	GRCGYC	2 cut(s)	327, 887
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	793
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	4 cut(s)	203, 356, 520, 719
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	2 cut(s)	327, 887
BstC8I	GCNNGC	7 cut(s)	171, 258, 409, 474, 690, 859, 863
BstDEI	CTNAG	3 cut(s)	383, 566, 851
BstDSI	CCRYGG	1 cut(s)	159
BstENI	CCTNNNNNAGG	2 cut(s)	200, 359
BstF5I	GGATG	2 cut(s)	298, 717
BstFNI	CGCG	2 cut(s)	98, 668
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	28, 329, 882
BstKTI	GATC	4 cut(s)	181, 193, 313, 802
BstMAI	GTCTC	3 cut(s)	25, 268, 831
BstMBI	GATC	4 cut(s)	178, 190, 310, 799
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 867
BstNI	CCWGG	4 cut(s)	203, 356, 520, 719
BstSCI	CCNGG	4 cut(s)	201, 354, 518, 717
BstUI	CGCG	2 cut(s)	98, 668
BstV1I	GCAGC	3 cut(s)	366, 697, 913
Bsu15I	ATCGAT	1 cut(s)	309
Bsu36I	CCTNAGG	1 cut(s)	851
BsuRI	GGCC	8 cut(s)	101, 110, 144, 164, 366, 665, 728, 857
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	298, 717
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 732
Cac8I	GCNNGC	7 cut(s)	171, 258, 409, 474, 690, 859, 863
CaiI	CAGNNNCTG	1 cut(s)	858
CfoI	GCGC	3 cut(s)	28, 329, 882
Cfr10I	RCCGGY	2 cut(s)	152, 481
Cfr13I	GGNCC	4 cut(s)	340, 364, 628, 855
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	876
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	3 cut(s)	133, 707, 724
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	383, 566, 851
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	4 cut(s)	180, 192, 312, 801
DpnII	GATC	4 cut(s)	178, 190, 310, 799
EaeI	YGGCCR	2 cut(s)	162, 726
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	340, 628
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	577
EcoNI	CCTNNNNNAGG	2 cut(s)	200, 359
EcoO109I	RGGNCCY	1 cut(s)	855
EcoRII	CCWGG	4 cut(s)	201, 354, 518, 717
EcoT14I	CCWWGG	1 cut(s)	793
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	793
FaeI	CATG	3 cut(s)	136, 710, 727
FaiI	YATR	7 cut(s)	134, 479, 600, 708, 725, 761, 843
FatI	CATG	3 cut(s)	132, 706, 723
Fnu4HI	GCNGC	5 cut(s)	99, 380, 666, 686, 902
FokI	GGATG	2 cut(s)	285, 724
Fsp4HI	GCNGC	5 cut(s)	99, 380, 666, 686, 902
GlaI	GCGC	3 cut(s)	27, 328, 881
GluI	GCNGC	5 cut(s)	99, 380, 666, 686, 902
GsuI	CTGGAG	3 cut(s)	223, 512, 714
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	8 cut(s)	101, 110, 144, 164, 366, 665, 728, 857
HapII	CCGG	4 cut(s)	129, 153, 412, 482
HgaI	GACGC	1 cut(s)	876
HhaI	GCGC	3 cut(s)	28, 329, 882
Hin1I	GRCGYC	2 cut(s)	327, 887
Hin1II	CATG	3 cut(s)	136, 710, 727
Hin6I	GCGC	3 cut(s)	26, 327, 880
HinP1I	GCGC	3 cut(s)	26, 327, 880
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	8 cut(s)	67, 125, 183, 273, 293, 437, 545, 829
HpaII	CCGG	4 cut(s)	129, 153, 412, 482
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	340, 628
Hpy188I	TCNGA	3 cut(s)	227, 272, 781
Hpy188III	TCNNGA	2 cut(s)	240, 529
Hpy8I	GTNNAC	2 cut(s)	340, 628
Hpy99I	CGWCG	6 cut(s)	116, 125, 179, 272, 326, 335
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	11, 685, 746, 870, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 867
HpyF3I	CTNAG	3 cut(s)	383, 566, 851
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	327, 887
Hsp92II	CATG	3 cut(s)	136, 710, 727
HspAI	GCGC	3 cut(s)	26, 327, 880
KasI	GGCGCC	1 cut(s)	326
Kzo9I	GATC	4 cut(s)	178, 190, 310, 799
LmnI	GCTCC	4 cut(s)	161, 216, 531, 703
Lsp1109I	GCAGC	3 cut(s)	366, 697, 913
LweI	GCATC	1 cut(s)	908
MabI	ACCWGGT	1 cut(s)	354
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	64, 601
MalI	GATC	4 cut(s)	180, 192, 312, 801
MboI	GATC	4 cut(s)	178, 190, 310, 799
MboII	GAAGA	5 cut(s)	36, 47, 100, 403, 927
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	3 cut(s)	416, 509, 785
MluNI	TGGCCA	1 cut(s)	728
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	4 cut(s)	61, 134, 287, 446
MmeI	TCCRAC	2 cut(s)	205, 250
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	1 cut(s)	940
MslI	CAYNNNNRTG	2 cut(s)	459, 734
Msp20I	TGGCCA	1 cut(s)	728
MspI	CCGG	4 cut(s)	129, 153, 412, 482
MspR9I	CCNGG	4 cut(s)	203, 356, 520, 719
MvaI	CCWGG	4 cut(s)	203, 356, 520, 719
MvnI	CGCG	2 cut(s)	98, 668
MwoI	GCNNNNNNNGC	5 cut(s)	107, 170, 451, 478, 867
NarI	GGCGCC	1 cut(s)	327
NdeII	GATC	4 cut(s)	178, 190, 310, 799
NlaIII	CATG	3 cut(s)	136, 710, 727
NlaIV	GGNNCC	6 cut(s)	151, 157, 328, 342, 406, 527
NmeAIII	GCCGAG	3 cut(s)	120, 126, 392
NmuCI	GTSAC	2 cut(s)	64, 601
OliI	CACNNNNGTG	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 288, 327, 330
PfeI	GAWTC	4 cut(s)	183, 273, 545, 829
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	100, 381, 667, 687, 903
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	4 cut(s)	61, 133, 287, 445
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	4 cut(s)	61, 133, 287, 445
Psp6I	CCWGG	4 cut(s)	201, 354, 518, 717
PspGI	CCWGG	4 cut(s)	201, 354, 518, 717
PspN4I	GGNNCC	6 cut(s)	151, 157, 328, 342, 406, 527
PspPI	GGNCC	4 cut(s)	340, 364, 628, 855
PstNI	CAGNNNCTG	1 cut(s)	858
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	459, 734
SaqAI	TTAA	1 cut(s)	940
SatI	GCNGC	5 cut(s)	99, 380, 666, 686, 902
Sau3AI	GATC	4 cut(s)	178, 190, 310, 799
Sau96I	GGNCC	4 cut(s)	340, 364, 628, 855
SchI	GAGTC	4 cut(s)	61, 134, 287, 446
ScrFI	CCNGG	4 cut(s)	203, 356, 520, 719
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	908
SfiI	GGCCNNNNNGGCC	1 cut(s)	107
SfoI	GGCGCC	1 cut(s)	328
SinI	GGWCC	2 cut(s)	340, 628
SmiMI	CAYNNNNRTG	2 cut(s)	459, 734
SmlI	CTYRAG	2 cut(s)	773, 874
SmoI	CTYRAG	2 cut(s)	773, 874
Sse9I	AATT	3 cut(s)	416, 509, 785
SsiI	CCGC	3 cut(s)	98, 199, 666
SspDI	GGCGCC	1 cut(s)	326
StyD4I	CCNGG	4 cut(s)	201, 354, 518, 717
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	1 cut(s)	736
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	8 cut(s)	114, 123, 177, 181, 291, 309, 321, 432
TasI	AATT	3 cut(s)	416, 509, 785
TauI	GCSGC	2 cut(s)	101, 668
TfiI	GAWTC	4 cut(s)	183, 273, 545, 829
Tru1I	TTAA	1 cut(s)	940
Tru9I	TTAA	1 cut(s)	940
TscAI	CASTG	2 cut(s)	520, 739
TseFI	GTSAC	2 cut(s)	64, 601
TseI	GCWGC	3 cut(s)	379, 685, 901
Tsp45I	GTSAC	2 cut(s)	64, 601
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	2 cut(s)	520, 739
VpaK11BI	GGWCC	2 cut(s)	340, 628
XagI	CCTNNNNNAGG	2 cut(s)	200, 359
XapI	RAATTY	3 cut(s)	416, 509, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.