AT1G71500

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014101
Physical Location & Seq
Forward (+)
26935982 .. 26937607
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71500.1

Sequence Viewer

Length: 864 bp
ATGGCGACCACCGCATCTTCATCTCTCCCCCGTAATTACTCCTTCACAACTCCGCGACCTTCATCATTCATCCGAGGACCGCCATTAGCTAGAACGCTGCCTCTCTATCTCCGCCGTAACCGTCGAGTAGCTCTCACTTACCGATTGGACCAGAATTCGAAGCAGAGAAGTGGTGGAAACGTAAGATGCGAGGCGACGGAGGTATCTTCTTCTTCTTCTGTATCCACACCTGGAAGGAATTGGGTGCCGGTGGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTTATTCAAGACGATGAGACGATATTGTTGCTTTGGTATAAGAACGATGTTTTTGCAATTGAGAATCGTTCACCAGCTGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGTGTGTCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCCGAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTATACCCTGTCAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGCGGGAAAACAGAGGCAGCTGCTGAGATCGTCTTCAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGTAGACGAGGTGAGAATGATTGTGGACGAGGGTTCTGAAGGATTTGGTTTCACGAAGAAGAACGAAGTGATAAACGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTCGAGCTATTGACAGGTAAAGGTCTATTGAAAGGAACAGGGTTCTTGGACTTCCTTTACTCTGCTTCAGATGCTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

287

Amino Acids

31.73

Weight (kDa)

8.88

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 80 - 192 4.4e-21 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 3 cut(s) 244, 253, 483
AccI GTMKAC 2 cut(s) 540, 669
AccII CGCG 1 cut(s) 55
AciI CCGC 6 cut(s) 12, 53, 80, 112, 591, 749
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 4 cut(s) 390, 607, 723, 831
AfaI GTAC 2 cut(s) 448, 485
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 299, 811, 859
AjnI CCWGG 2 cut(s) 229, 640
AluBI AGCT 7 cut(s) 89, 131, 368, 377, 608, 635, 787
AluI AGCT 7 cut(s) 89, 131, 368, 377, 608, 635, 787
Alw26I GTCTC 2 cut(s) 302, 579
AlwI GGATC 1 cut(s) 466
AlwNI CAGNNNCTG 1 cut(s) 611
ApeKI GCWGC 4 cut(s) 97, 605, 608, 769
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 390
Asp718I GGTACC 1 cut(s) 483
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 2 cut(s) 77, 148
AsuC2I CCSGG 2 cut(s) 476, 497
AsuHPI GGTGA 3 cut(s) 290, 354, 688
AsuII TTCGAA 1 cut(s) 158
AvaII GGWCC 2 cut(s) 77, 148
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BanI GGYRCC 3 cut(s) 244, 253, 483
BanII GRGCYC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 613
BbvI GCAGC 4 cut(s) 84, 595, 617, 756
BccI CCATC 2 cut(s) 410, 442
BceAI ACGGC 3 cut(s) 99, 241, 299
BcgI CGANNNNNNTGC 4 cut(s) 301, 326, 335, 360
BciT130I CCWGG 2 cut(s) 231, 642
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 2 cut(s) 476, 497
BcoDI GTCTC 2 cut(s) 302, 579
BfaI CTAG 2 cut(s) 90, 402
BfoI RGCGCY 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 5 cut(s) 98, 606, 609, 750, 770
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 5 cut(s) 99, 607, 610, 751, 771
Bme1390I CCNGG 4 cut(s) 231, 476, 497, 642
Bme18I GGWCC 2 cut(s) 77, 148
BmgT120I GGNCC 2 cut(s) 77, 148
BmiI GGNNCC 3 cut(s) 246, 255, 485
BmrFI CCNGG 4 cut(s) 231, 476, 497, 642
BmsI GCATC 3 cut(s) 23, 176, 841
BpiI GAAGAC 1 cut(s) 613
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 476, 497
BsaJI CCNNGG 2 cut(s) 73, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 469
BseBI CCWGG 2 cut(s) 231, 642
BseDI CCNNGG 2 cut(s) 73, 641
BseGI GGATG 2 cut(s) 69, 421
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 5 cut(s) 425, 515, 517, 603, 650
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 4 cut(s) 84, 595, 617, 756
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 55
BshNI GGYRCC 3 cut(s) 244, 253, 483
BsiSI CCGG 3 cut(s) 248, 475, 497
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 302, 579
BsmBI CGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 3 cut(s) 454, 471, 615
Bsp1720I GCTNAGC 1 cut(s) 636
BspACI CCGC 6 cut(s) 12, 53, 80, 112, 591, 749
BspCNI CTCAG 5 cut(s) 424, 516, 516, 604, 649
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 246, 255, 485
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 158
BspT107I GGYRCC 3 cut(s) 244, 253, 483
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 73, 641
BssMI GATC 3 cut(s) 454, 471, 615
BssNAI GTATAC 1 cut(s) 541
Bst1107I GTATAC 1 cut(s) 541
Bst2UI CCWGG 2 cut(s) 231, 642
Bst4CI ACNGT 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 158
BstDEI CTNAG 6 cut(s) 411, 458, 503, 524, 612, 636
BstF5I GGATG 2 cut(s) 69, 421
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 457, 474, 618
BstMAI GTCTC 2 cut(s) 302, 579
BstMBI GATC 3 cut(s) 454, 471, 615
BstMWI GCNNNNNNNGC 4 cut(s) 11, 253, 374, 851
BstNI CCWGG 2 cut(s) 231, 642
BstSCI CCNGG 4 cut(s) 229, 474, 495, 640
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 84, 595, 617, 756
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BstZ17I GTATAC 1 cut(s) 541
BsuI GTATCC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 69, 421
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 3 cut(s) 521, 631, 759
BveI ACCTGC 1 cut(s) 526
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 77, 148
Csp6I GTAC 2 cut(s) 447, 484
CviQI GTAC 2 cut(s) 447, 484
DdeI CTNAG 6 cut(s) 411, 458, 503, 524, 612, 636
DpnI GATC 3 cut(s) 456, 473, 617
DpnII GATC 3 cut(s) 454, 471, 615
EciI GGCGGA 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 77, 148
Eco57I CTGAAG 4 cut(s) 390, 607, 723, 831
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 229, 640
EcoT38I GRGCYC 1 cut(s) 648
Esp3I CGTCTC 1 cut(s) 302
FaiI YATR 5 cut(s) 330, 381, 541, 555, 573
FauI CCCGC 1 cut(s) 584
FblI GTMKAC 2 cut(s) 540, 669
Fnu4HI GCNGC 5 cut(s) 98, 606, 609, 750, 770
FokI GGATG 2 cut(s) 56, 428
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 5 cut(s) 98, 606, 609, 750, 770
FspBI CTAG 2 cut(s) 90, 402
GlaI GCGC 1 cut(s) 267
GluI GCNGC 5 cut(s) 98, 606, 609, 750, 770
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 269
HapII CCGG 3 cut(s) 248, 475, 497
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 3 cut(s) 355, 507, 762
HpaII CCGG 3 cut(s) 248, 475, 497
HphI GGTGA 3 cut(s) 290, 354, 688
Hpy166II GTNNAC 5 cut(s) 281, 362, 541, 670, 691
Hpy188I TCNGA 5 cut(s) 74, 273, 506, 703, 850
Hpy188III TCNNGA 4 cut(s) 299, 413, 511, 718
Hpy8I GTNNAC 5 cut(s) 281, 362, 541, 670, 691
Hpy99I CGWCG 3 cut(s) 126, 199, 442
HpyAV CCTTC 7 cut(s) 52, 69, 228, 365, 380, 698, 739
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 3 cut(s) 180, 449, 660
HpyCH4V TGCA 3 cut(s) 347, 423, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 253, 374, 851
HpyF3I CTNAG 6 cut(s) 411, 458, 503, 524, 612, 636
HpySE526I ACGT 3 cut(s) 180, 449, 660
HspAI GCGC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 454, 471, 615
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 4 cut(s) 84, 595, 617, 756
LweI GCATC 3 cut(s) 23, 176, 841
MaeI CTAG 2 cut(s) 90, 402
MaeII ACGT 3 cut(s) 180, 449, 660
MaeIII GTNAC 1 cut(s) 116
MalI GATC 3 cut(s) 456, 473, 617
MboI GATC 3 cut(s) 454, 471, 615
MboII GAAGA 8 cut(s) 9, 198, 201, 204, 207, 613, 733, 736
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 4 cut(s) 34, 154, 238, 348
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 9 cut(s) 68, 111, 184, 193, 519, 553, 595, 667, 688
MroXI GAANNNNTTC 1 cut(s) 390
MspA1I CMGCKG 3 cut(s) 368, 591, 608
MspI CCGG 3 cut(s) 248, 475, 497
MspR9I CCNGG 4 cut(s) 231, 476, 497, 642
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 2 cut(s) 231, 642
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 11, 253, 374, 851
NciI CCSGG 2 cut(s) 476, 497
NdeII GATC 3 cut(s) 454, 471, 615
NlaIV GGNNCC 3 cut(s) 246, 255, 485
NspV TTCGAA 1 cut(s) 158
PaqCI CACCTGC 1 cut(s) 526
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 269, 446
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 355, 762
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 5 cut(s) 99, 607, 610, 751, 771
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 229, 640
PspGI CCWGG 2 cut(s) 229, 640
PspN4I GGNNCC 3 cut(s) 246, 255, 485
PspPI GGNCC 2 cut(s) 77, 148
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 471
PvuII CAGCTG 2 cut(s) 368, 608
RsaI GTAC 2 cut(s) 448, 485
RsaNI GTAC 2 cut(s) 447, 484
SatI GCNGC 5 cut(s) 98, 606, 609, 750, 770
Sau3AI GATC 3 cut(s) 454, 471, 615
Sau96I GGNCC 2 cut(s) 77, 148
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 4 cut(s) 231, 476, 497, 642
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 3 cut(s) 23, 176, 841
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 2 cut(s) 77, 148
Sse9I AATT 4 cut(s) 34, 154, 238, 348
SsiI CCGC 6 cut(s) 12, 53, 80, 112, 591, 749
SspMI CTAG 2 cut(s) 90, 402
StyD4I CCNGG 4 cut(s) 229, 474, 495, 640
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 3 cut(s) 183, 452, 663
TaqI TCGA 4 cut(s) 124, 158, 437, 783
TasI AATT 4 cut(s) 34, 154, 238, 348
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 2 cut(s) 355, 762
TscAI CASTG 3 cut(s) 528, 631, 759
TseI GCWGC 4 cut(s) 97, 605, 608, 769
TspDTI ATGAA 3 cut(s) 9, 51, 58
TspGWI ACGGA 2 cut(s) 212, 455
TspRI CASTG 3 cut(s) 528, 631, 759
VpaK11BI GGWCC 2 cut(s) 77, 148
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 2 cut(s) 540, 669
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 2 cut(s) 90, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.