Rh2CG290000

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014101
Physical Location & Seq
Forward (+)
32719479 .. 32721708
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG290000.1

Sequence Viewer

Length: 708 bp
ATGGCCAACGCCTCACCCTTCGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCCCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCCTTACCATGCTCATCCCATCTCATCGTCATCGTCATCCGTTAATGCACTAGGAAAGAATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGGTGTCGTCGTCCTCTGTTGCCGAAGCGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACCAGGTCTTCGCCATTGAGAATCGCTCACCGGCCGAAGGAGCGTACAGTGAGGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGGACTGGTACCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCTGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCCGGTGTCACTGCTTCTGATGTCAATATCGAGGAGGTAACTCAACAAATTCATCTTCTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

235

Amino Acids

25.36

Weight (kDa)

6.21

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 80 - 192 1.5e-20 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 467, 483
AccB1I GGYRCC 5 cut(s) 244, 253, 467, 483, 590
AccBSI CCGCTC 1 cut(s) 283
AccII CGCG 1 cut(s) 288
AciI CCGC 5 cut(s) 73, 257, 263, 283, 460
AcoI YGGCCR 2 cut(s) 3, 366
AcsI RAATTY 2 cut(s) 598, 690
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 4 cut(s) 329, 380, 469, 485
AfiI CCNNNNNNNGG 1 cut(s) 371
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 3 cut(s) 406, 509, 611
AluI AGCT 3 cut(s) 406, 509, 611
Alw21I GWGCWC 1 cut(s) 511
AoxI GGCC 4 cut(s) 3, 309, 366, 388
ApeKI GCWGC 3 cut(s) 268, 608, 611
ApoI RAATTY 2 cut(s) 598, 690
ArsI GACNNNNNNTTYG 4 cut(s) 324, 326, 356, 358
Asp718I GGTACC 2 cut(s) 467, 483
AspLEI GCGC 2 cut(s) 268, 288
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 3 cut(s) 497, 588, 645
AsuHPI GGTGA 2 cut(s) 6, 354
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 3 cut(s) 255, 598, 620
BccI CCATC 4 cut(s) 73, 119, 410, 442
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 3 cut(s) 497, 588, 645
BfaI CTAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 6 cut(s) 257, 264, 269, 284, 609, 612
BlsI GCNGC 6 cut(s) 258, 265, 270, 285, 610, 613
Bme1390I CCNGG 4 cut(s) 338, 497, 588, 645
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 5 cut(s) 246, 255, 469, 485, 592
BmrFI CCNGG 4 cut(s) 338, 497, 588, 645
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuMI CCSGG 3 cut(s) 497, 588, 645
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 231, 273
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 3 cut(s) 247, 364, 517
Bse1I ACTGG 2 cut(s) 245, 469
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 231, 273
BseGI GGATG 3 cut(s) 106, 128, 421
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 425, 494
BseNI ACTGG 2 cut(s) 245, 469
BseRI GAGGAG 3 cut(s) 71, 383, 689
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 3 cut(s) 255, 598, 620
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 4 cut(s) 5, 311, 368, 390
BshNI GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 6 cut(s) 248, 365, 497, 518, 588, 645
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 4 cut(s) 5, 311, 368, 390
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 5 cut(s) 73, 257, 263, 283, 460
BspANI GGCC 4 cut(s) 5, 311, 368, 390
BspCNI CTCAG 2 cut(s) 424, 495
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 5 cut(s) 246, 255, 469, 485, 592
BspT107I GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BsrBI CCGCTC 1 cut(s) 283
BsrFI RCCGGY 3 cut(s) 247, 364, 517
BsrI ACTGG 2 cut(s) 245, 469
BssAI RCCGGY 3 cut(s) 247, 364, 517
BssECI CCNNGG 2 cut(s) 231, 273
BssMI GATC 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 318, 383, 595
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 261, 281
BstDEI CTNAG 2 cut(s) 411, 503
BstF5I GGATG 3 cut(s) 106, 128, 421
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 268, 288
BstKTI GATC 1 cut(s) 457
BstMBI GATC 1 cut(s) 454
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 4 cut(s) 336, 495, 586, 643
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 255, 598, 620
BstV2I GAAGAC 1 cut(s) 334
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 4 cut(s) 5, 311, 368, 390
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 106, 128, 421
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 3 cut(s) 388, 634, 651
Cac8I GCNNGC 2 cut(s) 261, 281
CfoI GCGC 2 cut(s) 268, 288
Cfr10I RCCGGY 3 cut(s) 247, 364, 517
Cfr13I GGNCC 1 cut(s) 388
CseI GACGC 2 cut(s) 183, 216
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 4 cut(s) 328, 379, 468, 484
CviAII CATG 1 cut(s) 101
CviQI GTAC 4 cut(s) 328, 379, 468, 484
DdeI CTNAG 2 cut(s) 411, 503
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 3, 366
EagI CGGCCG 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 509
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 511
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 314, 425, 537
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 100
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 6 cut(s) 257, 264, 269, 284, 609, 612
FokI GGATG 3 cut(s) 93, 115, 428
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 6 cut(s) 257, 264, 269, 284, 609, 612
FspBI CTAG 1 cut(s) 143
GlaI GCGC 2 cut(s) 267, 287
GluI GCNGC 6 cut(s) 257, 264, 269, 284, 609, 612
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 4 cut(s) 5, 311, 368, 390
HapII CCGG 6 cut(s) 248, 365, 497, 518, 588, 645
HgaI GACGC 2 cut(s) 183, 216
HhaI GCGC 2 cut(s) 268, 288
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 266, 286
HinP1I GCGC 2 cut(s) 266, 286
HinfI GANTC 2 cut(s) 355, 529
HpaII CCGG 6 cut(s) 248, 365, 497, 518, 588, 645
HphI GGTGA 2 cut(s) 6, 354
Hpy188I TCNGA 4 cut(s) 199, 235, 604, 661
Hpy188III TCNNGA 2 cut(s) 299, 413
Hpy99I CGWCG 5 cut(s) 174, 184, 187, 199, 211
HpyAV CCTTC 2 cut(s) 28, 365
HpyCH4III ACNGT 3 cut(s) 318, 383, 595
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 140, 189, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
HpyF3I CTNAG 2 cut(s) 411, 503
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 266, 286
KpnI GGTACC 2 cut(s) 471, 487
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 3 cut(s) 255, 598, 620
LweI GCATC 1 cut(s) 595
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 649, 679
MalI GATC 1 cut(s) 456
MbiI CCGCTC 1 cut(s) 283
MboI GATC 1 cut(s) 454
MboII GAAGA 3 cut(s) 60, 334, 689
MhlI GDGCHC 1 cut(s) 511
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 40, 151, 598, 690
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 135, 474
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 259, 611
MspI CCGG 6 cut(s) 248, 365, 497, 518, 588, 645
MspR9I CCNGG 4 cut(s) 338, 497, 588, 645
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
NciI CCSGG 3 cut(s) 497, 588, 645
NdeII GATC 1 cut(s) 454
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 5 cut(s) 246, 255, 469, 485, 592
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 2 cut(s) 191, 203
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 6 cut(s) 258, 265, 270, 285, 610, 613
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 5 cut(s) 246, 255, 469, 485, 592
PspPI GGNCC 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 4 cut(s) 329, 380, 469, 485
RsaNI GTAC 4 cut(s) 328, 379, 468, 484
SacI GAGCTC 1 cut(s) 511
SaqAI TTAA 2 cut(s) 135, 474
SatI GCNGC 6 cut(s) 257, 264, 269, 284, 609, 612
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 4 cut(s) 338, 497, 588, 645
SduI GDGCHC 1 cut(s) 511
SetI ASST 8 cut(s) 48, 188, 204, 342, 408, 511, 613, 681
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 1 cut(s) 595
Sse9I AATT 4 cut(s) 40, 151, 598, 690
SsiI CCGC 5 cut(s) 73, 257, 263, 283, 460
SspMI CTAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 511
StyD4I CCNGG 4 cut(s) 336, 495, 586, 643
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 318, 383, 595
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 169, 582, 672
TasI AATT 4 cut(s) 40, 151, 598, 690
TauI GCSGC 3 cut(s) 259, 266, 286
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 135, 474
Tru9I TTAA 2 cut(s) 135, 474
TscAI CASTG 3 cut(s) 388, 634, 658
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 268, 608, 611
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 573, 683
TspGWI ACGGA 2 cut(s) 121, 318
TspRI CASTG 3 cut(s) 388, 634, 658
Tth111I GACNNNGTC 1 cut(s) 338
XapI RAATTY 2 cut(s) 598, 690
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.