RLG00000018744

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014101
Physical Location & Seq
Forward (+)
35005330 .. 35008386
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018744

Sequence Viewer

Length: 1272 bp
ATGGCCAACGCCTCACCCTTCGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCTCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCTTTACCATGCTGCTGCTGCTCATCCCATCTCATCGTCATCGGCATCCGTTAATGCACTAGGTAAGAATTACCATTCTATCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGTTGTCGTCGTCGTCCTCTGTTGCCGAAACGTCCTCGGAGAACTGGGTGCCGGTGGTGCCACTGGCGGCGCTGCCCAAGGGCGAGCGGCGAGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACGAAGTCTTCGCCATTGAGAATCGCTCACCGGCCGAAGGAGCTTACAGTGAAGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGGACTGGTGCCATTAAGGACTGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCTGCCAAGAATGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCATAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCCGGTGTCACTGCTTCGGATGTCAATATCGAGGAGGTGAAAATGGTGGTTGATGAGGGCTTAGAAGGAGGGGCTTTTGGTTTCACAACGAGGAATGAAATAATAAATGGGAAGGCAGCTACGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTTTGCAGTTGTTGTGATTATAATGCCGAGTTCAACAGACTTGATTACTCATACCGTATTGGTCACGTCACATATGGTGAGCGGGTGCCGATATGGGACTCTGCTACAGAAACACTCACAGATTTCACTACTCGCTTCTCCTTCACCATTTACTTCTTAAACCATATAATGTCTCTTTCTCTGAACTTTAGGCTAAATGTCGCTTGTGCAAGCATAGAGACAGATGTTTTGAGGTTTGGGATGGTTTCATTAGAAATTGCTACTGGAAAGACGGCAGTTAACAGTTTCAAAGAAAAATATCTGCTAGAGTGGCTTCTCTCAGCTGTTGATGAAAGATTGTATATGGCTTTTGACAAGGAACAGGTAGCGTTTGATGATTGTTGGCATGTGGTGCGCTCATCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

424

Amino Acids

46.48

Weight (kDa)

5.24

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 84 - 196 1.5e-19 Rieske-like [2Fe-2S] domain
Lectin_legB PF00139 303 - 339 5.4e-07 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 6 cut(s) 256, 265, 479, 495, 602, 949
AccBSI CCGCTC 2 cut(s) 295, 946
AciI CCGC 5 cut(s) 73, 275, 295, 472, 946
AcoI YGGCCR 2 cut(s) 3, 378
AcsI RAATTY 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 2 cut(s) 341, 497
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 830
AgsI TTSAA 2 cut(s) 898, 1153
AjiI CACGTC 2 cut(s) 195, 931
AluBI AGCT 7 cut(s) 389, 418, 521, 623, 773, 808, 1187
AluI AGCT 7 cut(s) 389, 418, 521, 623, 773, 808, 1187
Alw21I GWGCWC 2 cut(s) 523, 810
Alw26I GTCTC 2 cut(s) 1041, 1076
AoxI GGCC 4 cut(s) 3, 321, 378, 400
ApeKI GCWGC 7 cut(s) 104, 107, 110, 280, 620, 623, 770
ApoI RAATTY 1 cut(s) 610
ArsI GACNNNNNNTTYG 6 cut(s) 336, 338, 368, 370, 1075, 1107
Asp718I GGTACC 1 cut(s) 495
AspLEI GCGC 2 cut(s) 280, 1260
AsuC2I CCSGG 3 cut(s) 509, 600, 657
AsuHPI GGTGA 5 cut(s) 6, 366, 703, 953, 1000
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 6 cut(s) 256, 265, 479, 495, 602, 949
BanII GRGCYC 2 cut(s) 523, 810
BbsI GAAGAC 2 cut(s) 346, 818
Bbv12I GWGCWC 2 cut(s) 523, 810
BbvI GCAGC 7 cut(s) 91, 94, 97, 267, 610, 632, 782
BccI CCATC 5 cut(s) 73, 128, 422, 454, 1099
BceAI ACGGC 1 cut(s) 1152
BcnI CCSGG 3 cut(s) 509, 600, 657
BcoDI GTCTC 2 cut(s) 1041, 1076
BfaI CTAG 2 cut(s) 152, 1169
BfmI CTRYAG 1 cut(s) 969
BfoI RGCGCY 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 830
BisI GCNGC 9 cut(s) 105, 108, 111, 276, 281, 296, 621, 624, 771
BlsI GCNGC 9 cut(s) 106, 109, 112, 277, 282, 297, 622, 625, 772
Bme1390I CCNGG 3 cut(s) 509, 600, 657
BmgBI CACGTC 2 cut(s) 195, 931
BmiI GGNNCC 7 cut(s) 258, 267, 481, 497, 604, 785, 951
BmrFI CCNGG 3 cut(s) 509, 600, 657
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 146, 607
BmuI ACTGGG 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 346, 818
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpuMI CCSGG 3 cut(s) 509, 600, 657
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 243, 285
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 3 cut(s) 259, 376, 529
Bse1I ACTGG 7 cut(s) 257, 276, 481, 497, 820, 844, 1132
BseDI CCNNGG 2 cut(s) 243, 285
BseGI GGATG 5 cut(s) 115, 137, 433, 679, 1110
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 3 cut(s) 437, 506, 1197
BseNI ACTGG 7 cut(s) 257, 276, 481, 497, 820, 844, 1132
BseRI GAGGAG 3 cut(s) 71, 395, 701
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 7 cut(s) 91, 94, 97, 267, 610, 632, 782
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 4 cut(s) 5, 323, 380, 402
BshNI GGYRCC 6 cut(s) 256, 265, 479, 495, 602, 949
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 523, 810
BsiSI CCGG 6 cut(s) 260, 377, 509, 530, 600, 657
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 1041, 1076
BsmFI GGGAC 1 cut(s) 974
BsnI GGCC 4 cut(s) 5, 323, 380, 402
Bsp1286I GDGCHC 2 cut(s) 523, 810
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 5 cut(s) 73, 275, 295, 472, 946
BspANI GGCC 4 cut(s) 5, 323, 380, 402
BspCNI CTCAG 3 cut(s) 436, 507, 1196
BspLI GGNNCC 7 cut(s) 258, 267, 481, 497, 604, 785, 951
BspT107I GGYRCC 6 cut(s) 256, 265, 479, 495, 602, 949
BspTI CTTAAG 1 cut(s) 830
BsrBI CCGCTC 2 cut(s) 295, 946
BsrFI RCCGGY 3 cut(s) 259, 376, 529
BsrI ACTGG 7 cut(s) 257, 276, 481, 497, 820, 844, 1132
BssAI RCCGGY 3 cut(s) 259, 376, 529
BssECI CCNNGG 2 cut(s) 243, 285
BssMI GATC 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 4 cut(s) 330, 395, 920, 1148
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 830
BstAPI GCANNNNNTGC 1 cut(s) 1255
BstC8I GCNNGC 2 cut(s) 293, 1075
BstDEI CTNAG 4 cut(s) 423, 515, 715, 1183
BstF5I GGATG 5 cut(s) 115, 137, 433, 679, 1110
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 1260
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 2 cut(s) 1041, 1076
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 5 cut(s) 110, 265, 386, 1174, 1255
BstNSI RCATGY 1 cut(s) 1253
BstSCI CCNGG 3 cut(s) 507, 598, 655
BstSFI CTRYAG 1 cut(s) 969
BstV1I GCAGC 7 cut(s) 91, 94, 97, 267, 610, 632, 782
BstV2I GAAGAC 2 cut(s) 346, 818
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 4 cut(s) 5, 323, 380, 402
BtrI CACGTC 2 cut(s) 195, 931
BtsCI GGATG 5 cut(s) 115, 137, 433, 679, 1110
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 4 cut(s) 269, 400, 646, 663
Cac8I GCNNGC 2 cut(s) 293, 1075
CfoI GCGC 2 cut(s) 280, 1260
Cfr10I RCCGGY 3 cut(s) 259, 376, 529
CseI GACGC 1 cut(s) 192
Csp6I GTAC 2 cut(s) 340, 496
CviAII CATG 2 cut(s) 101, 1250
CviQI GTAC 2 cut(s) 340, 496
DdeI CTNAG 4 cut(s) 423, 515, 715, 1183
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 3, 378
EagI CGGCCG 1 cut(s) 378
Ecl136II GAGCTC 2 cut(s) 521, 808
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 523, 810
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 2 cut(s) 521, 808
EcoICRI GAGCTC 2 cut(s) 521, 808
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 523, 810
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 104, 1253
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 1 cut(s) 974
FatI CATG 2 cut(s) 100, 1249
FauI CCCGC 2 cut(s) 80, 939
FauNDI CATATG 1 cut(s) 937
Fnu4HI GCNGC 9 cut(s) 105, 108, 111, 276, 281, 296, 621, 624, 771
FokI GGATG 5 cut(s) 102, 124, 440, 686, 1117
FriOI GRGCYC 2 cut(s) 523, 810
Fsp4HI GCNGC 9 cut(s) 105, 108, 111, 276, 281, 296, 621, 624, 771
FspBI CTAG 2 cut(s) 152, 1169
GlaI GCGC 2 cut(s) 279, 1259
GluI GCNGC 9 cut(s) 105, 108, 111, 276, 281, 296, 621, 624, 771
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 4 cut(s) 5, 323, 380, 402
HapII CCGG 6 cut(s) 260, 377, 509, 530, 600, 657
HgaI GACGC 1 cut(s) 192
HhaI GCGC 2 cut(s) 280, 1260
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 2 cut(s) 104, 1253
Hin6I GCGC 2 cut(s) 278, 1258
HinP1I GCGC 2 cut(s) 278, 1258
HincII GTYRAC 1 cut(s) 1144
HindII GTYRAC 1 cut(s) 1144
HinfI GANTC 3 cut(s) 367, 541, 962
HpaI GTTAAC 1 cut(s) 1144
HpaII CCGG 6 cut(s) 260, 377, 509, 530, 600, 657
HphI GGTGA 5 cut(s) 6, 366, 703, 953, 1000
Hpy166II GTNNAC 1 cut(s) 1144
Hpy188I TCNGA 5 cut(s) 208, 247, 616, 673, 1047
Hpy188III TCNNGA 4 cut(s) 311, 425, 811, 1266
Hpy8I GTNNAC 1 cut(s) 1144
Hpy99I CGWCG 6 cut(s) 183, 193, 196, 208, 220, 223
HpyAV CCTTC 6 cut(s) 28, 377, 392, 713, 760, 1015
HpyCH4III ACNGT 4 cut(s) 330, 395, 920, 1148
HpyCH4IV ACGT 3 cut(s) 194, 239, 930
HpyCH4V TGCA 5 cut(s) 149, 198, 620, 870, 1073
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 265, 386, 1174, 1255
HpyF3I CTNAG 4 cut(s) 423, 515, 715, 1183
HpySE526I ACGT 3 cut(s) 194, 239, 930
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 104, 1253
HspAI GCGC 2 cut(s) 278, 1258
KpnI GGTACC 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 1144
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 7 cut(s) 91, 94, 97, 267, 610, 632, 782
LweI GCATC 2 cut(s) 146, 607
MaeI CTAG 2 cut(s) 152, 1169
MaeII ACGT 3 cut(s) 194, 239, 930
MaeIII GTNAC 3 cut(s) 661, 926, 931
MalI GATC 1 cut(s) 468
MbiI CCGCTC 2 cut(s) 295, 946
MboI GATC 1 cut(s) 466
MboII GAAGA 3 cut(s) 60, 346, 818
MhlI GDGCHC 2 cut(s) 523, 810
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 40, 160, 610, 1119
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 535, 956
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 144, 486, 831, 1022, 1143
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 623, 1187
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 6 cut(s) 260, 377, 509, 530, 600, 657
MspR9I CCNGG 3 cut(s) 509, 600, 657
MwoI GCNNNNNNNGC 5 cut(s) 110, 265, 386, 1174, 1255
NciI CCSGG 3 cut(s) 509, 600, 657
NdeI CATATG 1 cut(s) 937
NdeII GATC 1 cut(s) 466
NlaIII CATG 2 cut(s) 104, 1253
NlaIV GGNNCC 7 cut(s) 258, 267, 481, 497, 604, 785, 951
NmeAIII GCCGAG 2 cut(s) 652, 916
NmuCI GTSAC 3 cut(s) 661, 926, 931
NspI RCATGY 1 cut(s) 1253
PceI AGGCCT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 212
PfeI GAWTC 1 cut(s) 367
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 9 cut(s) 106, 109, 112, 277, 282, 297, 622, 625, 772
PleI GAGTC 2 cut(s) 535, 956
PpsI GAGTC 2 cut(s) 535, 956
PsiI TTATAA 1 cut(s) 885
Psp124BI GAGCTC 2 cut(s) 523, 810
PspN4I GGNNCC 7 cut(s) 258, 267, 481, 497, 604, 785, 951
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 2 cut(s) 623, 1187
RsaI GTAC 2 cut(s) 341, 497
RsaNI GTAC 2 cut(s) 340, 496
SacI GAGCTC 2 cut(s) 523, 810
SaqAI TTAA 5 cut(s) 144, 486, 831, 1022, 1143
SatI GCNGC 9 cut(s) 105, 108, 111, 276, 281, 296, 621, 624, 771
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 2 cut(s) 535, 956
ScrFI CCNGG 3 cut(s) 509, 600, 657
SduI GDGCHC 2 cut(s) 523, 810
SfaNI GCATC 2 cut(s) 146, 607
SfcI CTRYAG 1 cut(s) 969
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 4 cut(s) 40, 160, 610, 1119
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 5 cut(s) 73, 275, 295, 472, 946
SspMI CTAG 2 cut(s) 152, 1169
SstI GAGCTC 2 cut(s) 523, 810
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 507, 598, 655
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 4 cut(s) 330, 395, 920, 1148
TaiI ACGT 3 cut(s) 197, 242, 933
TaqI TCGA 3 cut(s) 178, 594, 684
TasI AATT 4 cut(s) 40, 160, 610, 1119
TauI GCSGC 2 cut(s) 278, 298
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 5 cut(s) 144, 486, 831, 1022, 1143
Tru9I TTAA 5 cut(s) 144, 486, 831, 1022, 1143
TscAI CASTG 4 cut(s) 276, 400, 646, 670
TseFI GTSAC 3 cut(s) 661, 926, 931
TseI GCWGC 7 cut(s) 104, 107, 110, 280, 620, 623, 770
Tsp45I GTSAC 3 cut(s) 661, 926, 931
TspDTI ATGAA 4 cut(s) 585, 765, 1101, 1209
TspGWI ACGGA 2 cut(s) 130, 330
TspRI CASTG 4 cut(s) 276, 400, 646, 670
Tth111I GACNNNGTC 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 830
XapI RAATTY 1 cut(s) 610
XceI RCATGY 1 cut(s) 1253
XspI CTAG 2 cut(s) 152, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.