Rw0G013110

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00587
OG0014101
Physical Location & Seq
Reverse (-)
11070 .. 12729
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013110.1

Sequence Viewer

Length: 882 bp
ATGGCCAACGCCTCACCCTTAGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCCTTCCATCTTCCCGCCCTCTCCTCCCCCACCCTCTTTACCATGCTGCTGCTGCTCATCCCATCTCATCGTCATCGTCATCCGTTATTGCACTAGGAAAGAATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGGTGTCGTCGTCCTCTGTTGCCGAAGCGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACCAAGTCTTCGCCATTGAGAATCGCTCCCCGGCCGAAGGAGCTTACAGTGAGGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGGACTGGTACCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCCGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCTGGTGTCACTGCTTCTGATGTCAATATCGAGGAGGTGAAAATGGTGGTTGATGAGGGCTTAGAAGGAGGGGCTTTTGGTTTCACAACGAGGAATGAAATAATAAATGGGAAGGCAGCTACGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTCTCAAATGCTCTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

293

Amino Acids

31.38

Weight (kDa)

5.66

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 83 - 195 2.5e-20 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 476, 492
AccB1I GGYRCC 5 cut(s) 253, 262, 476, 492, 599
AccBSI CCGCTC 1 cut(s) 292
AccII CGCG 1 cut(s) 297
AciI CCGC 6 cut(s) 73, 266, 272, 292, 469, 555
AcoI YGGCCR 2 cut(s) 3, 375
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 3 cut(s) 338, 478, 494
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 827
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 6 cut(s) 386, 415, 518, 620, 770, 805
AluI AGCT 6 cut(s) 386, 415, 518, 620, 770, 805
Alw21I GWGCWC 2 cut(s) 520, 807
Alw26I GTCTC 1 cut(s) 868
AoxI GGCC 4 cut(s) 3, 318, 375, 397
ApeKI GCWGC 7 cut(s) 104, 107, 110, 277, 617, 620, 767
ApoI RAATTY 1 cut(s) 607
ArsI GACNNNNNNTTYG 4 cut(s) 333, 335, 365, 367
Asp718I GGTACC 2 cut(s) 476, 492
AspLEI GCGC 2 cut(s) 277, 297
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 3 cut(s) 374, 506, 597
AsuHPI GGTGA 2 cut(s) 6, 700
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 253, 262, 476, 492, 599
BanII GRGCYC 2 cut(s) 520, 807
BbsI GAAGAC 2 cut(s) 343, 815
Bbv12I GWGCWC 2 cut(s) 520, 807
BbvI GCAGC 7 cut(s) 91, 94, 97, 264, 607, 629, 779
BccI CCATC 4 cut(s) 73, 128, 419, 451
BciT130I CCWGG 1 cut(s) 654
BcnI CCSGG 3 cut(s) 374, 506, 597
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 278
BfrI CTTAAG 1 cut(s) 827
Bme1390I CCNGG 4 cut(s) 374, 506, 597, 654
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 6 cut(s) 255, 264, 478, 494, 601, 782
BmrFI CCNGG 4 cut(s) 374, 506, 597, 654
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 343, 815
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 19
BpuMI CCSGG 3 cut(s) 374, 506, 597
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 240, 282, 372
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 2 cut(s) 256, 526
Bse1I ACTGG 5 cut(s) 254, 478, 817, 841, 877
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 240, 282, 372
BseGI GGATG 3 cut(s) 115, 137, 430
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 434, 503
BseNI ACTGG 5 cut(s) 254, 478, 817, 841, 877
BseRI GAGGAG 3 cut(s) 71, 392, 698
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 7 cut(s) 91, 94, 97, 264, 607, 629, 779
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 4 cut(s) 5, 320, 377, 399
BshNI GGYRCC 5 cut(s) 253, 262, 476, 492, 599
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 520, 807
BsiSI CCGG 5 cut(s) 257, 374, 506, 527, 597
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 4 cut(s) 5, 320, 377, 399
Bsp1286I GDGCHC 2 cut(s) 520, 807
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 6 cut(s) 73, 266, 272, 292, 469, 555
BspANI GGCC 4 cut(s) 5, 320, 377, 399
BspCNI CTCAG 2 cut(s) 433, 504
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 6 cut(s) 255, 264, 478, 494, 601, 782
BspT107I GGYRCC 5 cut(s) 253, 262, 476, 492, 599
BspTI CTTAAG 1 cut(s) 827
BsrBI CCGCTC 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 256, 526
BsrI ACTGG 5 cut(s) 254, 478, 817, 841, 877
BssAI RCCGGY 2 cut(s) 256, 526
BssECI CCNNGG 3 cut(s) 240, 282, 372
BssMI GATC 1 cut(s) 463
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 327, 392, 604
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 270, 290
BstDEI CTNAG 4 cut(s) 19, 420, 512, 712
BstF5I GGATG 3 cut(s) 115, 137, 430
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 2 cut(s) 277, 297
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 1 cut(s) 463
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 110, 262, 274, 294, 383
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 4 cut(s) 372, 504, 595, 652
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 7 cut(s) 91, 94, 97, 264, 607, 629, 779
BstV2I GAAGAC 2 cut(s) 343, 815
BstZI CGGCCG 1 cut(s) 375
BsuRI GGCC 4 cut(s) 5, 320, 377, 399
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 115, 137, 430
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 397, 643, 660
Cac8I GCNNGC 2 cut(s) 270, 290
CfoI GCGC 2 cut(s) 277, 297
Cfr10I RCCGGY 2 cut(s) 256, 526
Cfr13I GGNCC 1 cut(s) 397
CseI GACGC 2 cut(s) 192, 225
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 3 cut(s) 337, 477, 493
CviAII CATG 1 cut(s) 101
CviQI GTAC 3 cut(s) 337, 477, 493
DdeI CTNAG 4 cut(s) 19, 420, 512, 712
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 3, 375
EagI CGGCCG 1 cut(s) 375
Ecl136II GAGCTC 2 cut(s) 518, 805
EclXI CGGCCG 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 520, 807
Eco52I CGGCCG 1 cut(s) 375
Eco53kI GAGCTC 2 cut(s) 518, 805
EcoICRI GAGCTC 2 cut(s) 518, 805
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 520, 807
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 323, 434, 546
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 100
FauI CCCGC 2 cut(s) 80, 562
FokI GGATG 3 cut(s) 102, 124, 437
FriOI GRGCYC 2 cut(s) 520, 807
FspBI CTAG 1 cut(s) 152
GlaI GCGC 2 cut(s) 276, 296
GsuI CTGGAG 1 cut(s) 860
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 4 cut(s) 5, 320, 377, 399
HapII CCGG 5 cut(s) 257, 374, 506, 527, 597
HgaI GACGC 2 cut(s) 192, 225
HhaI GCGC 2 cut(s) 277, 297
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 275, 295
HinP1I GCGC 2 cut(s) 275, 295
HinfI GANTC 2 cut(s) 364, 538
HpaII CCGG 5 cut(s) 257, 374, 506, 527, 597
HphI GGTGA 2 cut(s) 6, 700
Hpy188I TCNGA 4 cut(s) 208, 244, 613, 670
Hpy188III TCNNGA 3 cut(s) 308, 422, 808
Hpy99I CGWCG 5 cut(s) 183, 193, 196, 208, 220
HpyAV CCTTC 4 cut(s) 71, 374, 710, 757
HpyCH4III ACNGT 3 cut(s) 327, 392, 604
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 149, 198, 617
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 262, 274, 294, 383
HpyF3I CTNAG 4 cut(s) 19, 420, 512, 712
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 275, 295
KpnI GGTACC 2 cut(s) 480, 496
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 374, 383
Lsp1109I GCAGC 7 cut(s) 91, 94, 97, 264, 607, 629, 779
LweI GCATC 1 cut(s) 604
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 658
MalI GATC 1 cut(s) 465
MbiI CCGCTC 1 cut(s) 292
MboI GATC 1 cut(s) 463
MboII GAAGA 3 cut(s) 60, 343, 815
MhlI GDGCHC 2 cut(s) 520, 807
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 40, 160, 607
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 483, 828
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 268, 620
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 5 cut(s) 257, 374, 506, 527, 597
MspR9I CCNGG 4 cut(s) 374, 506, 597, 654
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 110, 262, 274, 294, 383
NciI CCSGG 3 cut(s) 374, 506, 597
NdeII GATC 1 cut(s) 463
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 6 cut(s) 255, 264, 478, 494, 601, 782
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 212
PfeI GAWTC 1 cut(s) 364
PflFI GACNNNGTC 1 cut(s) 347
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp124BI GAGCTC 2 cut(s) 520, 807
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 6 cut(s) 255, 264, 478, 494, 601, 782
PspPI GGNCC 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 338, 478, 494
RsaNI GTAC 3 cut(s) 337, 477, 493
SacI GAGCTC 2 cut(s) 520, 807
SaqAI TTAA 2 cut(s) 483, 828
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 4 cut(s) 374, 506, 597, 654
SduI GDGCHC 2 cut(s) 520, 807
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 3 cut(s) 40, 160, 607
SsiI CCGC 6 cut(s) 73, 266, 272, 292, 469, 555
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 2 cut(s) 520, 807
StyD4I CCNGG 4 cut(s) 372, 504, 595, 652
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 327, 392, 604
TaiI ACGT 1 cut(s) 197
TaqI TCGA 3 cut(s) 178, 591, 681
TasI AATT 3 cut(s) 40, 160, 607
TauI GCSGC 3 cut(s) 268, 275, 295
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 483, 828
Tru9I TTAA 2 cut(s) 483, 828
TscAI CASTG 3 cut(s) 397, 643, 667
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 7 cut(s) 104, 107, 110, 277, 617, 620, 767
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 2 cut(s) 582, 762
TspGWI ACGGA 2 cut(s) 130, 327
TspRI CASTG 3 cut(s) 397, 643, 667
Tth111I GACNNNGTC 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 827
XapI RAATTY 1 cut(s) 607
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.