Rmu_sc0011914.1_g000003

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011914.1
OG0014101
Physical Location & Seq
Forward (+)
5877 .. 6643
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011914.1_g000003.1.cds

Sequence Viewer

Length: 633 bp
atggccaacgcctcacccttcgccccctcatttccccgtaattacctccttacccctacccctccatcttcccgccctctcctcccccacactctttaccatgctcatcccatctcatcgtcatcgtcatcgtcatccgttaatgcactaggaaagaattaccattctgtccctcgacgagcaacgacgacgtgcaaggcgtcggaggtgtcgtcgtcctctgttgccgaagcgtcctcggagaactgggtgccggtggtgccgctggcggcgctgcccaagggcgagcggcgcgtgatagttcaggacggagaggccatactgttgctctggtacaaagaccaagtcttcgccattgagaatcgctcaccggccgaaggagcttacagtgagggcctcctcaatgccaagctcactcaggatgggtgtatagtgtgtccatcaactgatagcacatttgatctgcggactggtaccattaaggaatggtaccccaaaaacccggtgctgagagctctcacaccggctttgaggactctttatgtttatcccgccaagactgatgaaaagaacatctacattagcctcgaacccggcaccgtaaattctgatgcagctgccgagattgtgttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

211

Amino Acids

22.88

Weight (kDa)

6.9

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 473, 489
AccB1I GGYRCC 5 cut(s) 250, 259, 473, 489, 596
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 294
AciI CCGC 6 cut(s) 73, 263, 269, 289, 466, 552
AcoI YGGCCR 2 cut(s) 3, 372
AcsI RAATTY 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 3 cut(s) 335, 475, 491
AfiI CCNNNNNNNGG 1 cut(s) 377
AjiI CACGTC 1 cut(s) 192
AluBI AGCT 4 cut(s) 383, 412, 515, 617
AluI AGCT 4 cut(s) 383, 412, 515, 617
Alw21I GWGCWC 1 cut(s) 517
AoxI GGCC 4 cut(s) 3, 315, 372, 394
ApeKI GCWGC 3 cut(s) 274, 614, 617
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 4 cut(s) 330, 332, 362, 364
Asp718I GGTACC 2 cut(s) 473, 489
AspLEI GCGC 2 cut(s) 274, 294
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 503, 594
AsuHPI GGTGA 2 cut(s) 6, 360
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 250, 259, 473, 489, 596
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 261, 604, 626
BccI CCATC 4 cut(s) 73, 119, 416, 448
BcnI CCSGG 2 cut(s) 503, 594
BfaI CTAG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 6 cut(s) 263, 270, 275, 290, 615, 618
BlsI GCNGC 6 cut(s) 264, 271, 276, 291, 616, 619
Bme1390I CCNGG 2 cut(s) 503, 594
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 5 cut(s) 252, 261, 475, 491, 598
BmrFI CCNGG 2 cut(s) 503, 594
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuMI CCSGG 2 cut(s) 503, 594
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 237, 279
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 3 cut(s) 253, 370, 523
Bse1I ACTGG 2 cut(s) 251, 475
BseDI CCNNGG 2 cut(s) 237, 279
BseGI GGATG 3 cut(s) 106, 134, 427
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 431, 500
BseNI ACTGG 2 cut(s) 251, 475
BseRI GAGGAG 2 cut(s) 71, 389
BseX3I CGGCCG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 261, 604, 626
Bsh1236I CGCG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 4 cut(s) 5, 317, 374, 396
BshNI GGYRCC 5 cut(s) 250, 259, 473, 489, 596
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 5 cut(s) 254, 371, 503, 524, 594
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 4 cut(s) 5, 317, 374, 396
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 6 cut(s) 73, 263, 269, 289, 466, 552
BspANI GGCC 4 cut(s) 5, 317, 374, 396
BspCNI CTCAG 2 cut(s) 430, 501
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 5 cut(s) 252, 261, 475, 491, 598
BspT107I GGYRCC 5 cut(s) 250, 259, 473, 489, 596
BsrBI CCGCTC 1 cut(s) 289
BsrFI RCCGGY 3 cut(s) 253, 370, 523
BsrI ACTGG 2 cut(s) 251, 475
BssAI RCCGGY 3 cut(s) 253, 370, 523
BssECI CCNNGG 2 cut(s) 237, 279
BssMI GATC 1 cut(s) 460
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 324, 389, 601
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 267, 287
BstDEI CTNAG 2 cut(s) 417, 509
BstF5I GGATG 3 cut(s) 106, 134, 427
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 274, 294
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 4 cut(s) 259, 271, 291, 380
BstSCI CCNGG 2 cut(s) 501, 592
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 261, 604, 626
BstV2I GAAGAC 1 cut(s) 340
BstZI CGGCCG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 5, 317, 374, 396
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 106, 134, 427
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 267, 287
CfoI GCGC 2 cut(s) 274, 294
Cfr10I RCCGGY 3 cut(s) 253, 370, 523
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 2 cut(s) 189, 222
Csp6I GTAC 3 cut(s) 334, 474, 490
CviAII CATG 1 cut(s) 101
CviQI GTAC 3 cut(s) 334, 474, 490
DdeI CTNAG 2 cut(s) 417, 509
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
EaeI YGGCCR 2 cut(s) 3, 372
EagI CGGCCG 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 517
Eco52I CGGCCG 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 320, 431, 543
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 100
FauI CCCGC 2 cut(s) 80, 559
Fnu4HI GCNGC 6 cut(s) 263, 270, 275, 290, 615, 618
FokI GGATG 3 cut(s) 93, 121, 434
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 6 cut(s) 263, 270, 275, 290, 615, 618
FspBI CTAG 1 cut(s) 149
GlaI GCGC 2 cut(s) 273, 293
GluI GCNGC 6 cut(s) 263, 270, 275, 290, 615, 618
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 4 cut(s) 5, 317, 374, 396
HapII CCGG 5 cut(s) 254, 371, 503, 524, 594
HgaI GACGC 2 cut(s) 189, 222
HhaI GCGC 2 cut(s) 274, 294
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 272, 292
HinP1I GCGC 2 cut(s) 272, 292
HinfI GANTC 2 cut(s) 361, 535
HpaII CCGG 5 cut(s) 254, 371, 503, 524, 594
HphI GGTGA 2 cut(s) 6, 360
Hpy188I TCNGA 3 cut(s) 205, 241, 610
Hpy188III TCNNGA 2 cut(s) 305, 419
Hpy99I CGWCG 5 cut(s) 180, 190, 193, 205, 217
HpyAV CCTTC 2 cut(s) 28, 371
HpyCH4III ACNGT 3 cut(s) 324, 389, 601
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 146, 195, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 259, 271, 291, 380
HpyF3I CTNAG 2 cut(s) 417, 509
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 272, 292
KpnI GGTACC 2 cut(s) 477, 493
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 3 cut(s) 261, 604, 626
LweI GCATC 1 cut(s) 601
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 462
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 460
MboII GAAGA 2 cut(s) 60, 340
MhlI GDGCHC 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 40, 157, 604
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 480
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 265, 617
MspI CCGG 5 cut(s) 254, 371, 503, 524, 594
MspR9I CCNGG 2 cut(s) 503, 594
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 259, 271, 291, 380
NciI CCSGG 2 cut(s) 503, 594
NdeII GATC 1 cut(s) 460
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 5 cut(s) 252, 261, 475, 491, 598
PcsI WCGNNNNNNNCGW 2 cut(s) 197, 209
PfeI GAWTC 1 cut(s) 361
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 6 cut(s) 264, 271, 276, 291, 616, 619
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
Psp124BI GAGCTC 1 cut(s) 517
PspN4I GGNNCC 5 cut(s) 252, 261, 475, 491, 598
PspPI GGNCC 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 3 cut(s) 335, 475, 491
RsaNI GTAC 3 cut(s) 334, 474, 490
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 2 cut(s) 141, 480
SatI GCNGC 6 cut(s) 263, 270, 275, 290, 615, 618
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 2 cut(s) 503, 594
SduI GDGCHC 1 cut(s) 517
SetI ASST 7 cut(s) 48, 194, 210, 385, 414, 517, 619
SfaNI GCATC 1 cut(s) 601
Sse9I AATT 3 cut(s) 40, 157, 604
SsiI CCGC 6 cut(s) 73, 263, 269, 289, 466, 552
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 501, 592
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 324, 389, 601
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 175, 588
TasI AATT 3 cut(s) 40, 157, 604
TauI GCSGC 3 cut(s) 265, 272, 292
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 141, 480
Tru9I TTAA 2 cut(s) 141, 480
TscAI CASTG 1 cut(s) 394
TseI GCWGC 3 cut(s) 274, 614, 617
TspDTI ATGAA 1 cut(s) 579
TspGWI ACGGA 2 cut(s) 127, 324
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 344
XapI RAATTY 1 cut(s) 604
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.