Rroxscaffold_2G00120820

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014101
Physical Location & Seq
Reverse (-)
53196041 .. 53199133
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120820.1

Sequence Viewer

Length: 1119 bp
ATGGCCAACGCCTCACCCTTCGCCCCCTCTTTTCCCCGTAATTACCTCCTTACCCCTACCCCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCTTTACCATGCTGCTGCTCATCCCATCTCATCGTCATCGTCATCGTCATCCATTAATGCACTAGGAAAGAATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGTTGTCGTCGTCCTCTGTTGCCGAAACGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCCGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACGAAGTCTTCGCCATTGAGAATCGCTCACCGGCCGAAGGAGCTTACACTGAAGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGCACTGGTGCCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAAGACTCTTTATGTTTATCCTGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCTGGTGTCACTGCTTCGGATGTCAATATCGAGGAGGTAACTCAACAAATTCATCTTCTTGGATTGAGGGCTTTTGGTTTCACAACGAGGAATGAAATAATAAATGGGAAGGCAGCTGCGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTCTCAAATGCTCTCCATTATGGCAGTTGTTGTGATTATAATGCCGAGTTCAACAGACTTGATTACTCATACCGTATTGGTCACGTCACATATGGTGAGCGAGTGCCGATATGGGATTCTGCTACAGAAATACTCACAGATTTCACTACTCGCTTCTCCTTCACCATTTACTTCTTAAACCATATAATGTTTCTCTTTCTCCGTATGGACATGGGATTGTATTCTTCCTTTCCCCAGTTGGATATGAAATCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

372

Amino Acids

40.99

Weight (kDa)

6.0

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 84 - 196 3.1e-19 Rieske-like [2Fe-2S] domain
Lectin_legB PF00139 308 - 343 2.7e-06 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
Acc16I TGCGCA 1 cut(s) 473
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 5 cut(s) 256, 265, 479, 495, 602
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 2 cut(s) 278, 300
AciI CCGC 4 cut(s) 73, 269, 276, 295
AcoI YGGCCR 3 cut(s) 3, 273, 378
AcsI RAATTY 2 cut(s) 610, 702
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 2 cut(s) 341, 497
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 2 cut(s) 538, 913
AjiI CACGTC 2 cut(s) 198, 946
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 6 cut(s) 389, 418, 521, 623, 770, 805
AluI AGCT 6 cut(s) 389, 418, 521, 623, 770, 805
Alw21I GWGCWC 2 cut(s) 523, 807
Alw26I GTCTC 1 cut(s) 868
AoxI GGCC 5 cut(s) 3, 273, 321, 378, 400
ApeKI GCWGC 7 cut(s) 104, 107, 280, 620, 623, 767, 770
ApoI RAATTY 2 cut(s) 610, 702
ArsI GACNNNNNNTTYG 4 cut(s) 336, 338, 368, 370
AseI ATTAAT 1 cut(s) 147
Asp718I GGTACC 1 cut(s) 495
AspLEI GCGC 3 cut(s) 280, 300, 474
AsuC2I CCSGG 2 cut(s) 509, 600
AsuHPI GGTGA 4 cut(s) 6, 366, 968, 1015
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 256, 265, 479, 495, 602
BanII GRGCYC 2 cut(s) 523, 807
BbsI GAAGAC 3 cut(s) 346, 545, 815
Bbv12I GWGCWC 2 cut(s) 523, 807
BbvI GCAGC 7 cut(s) 91, 94, 267, 610, 632, 757, 779
BccI CCATC 4 cut(s) 73, 125, 422, 454
BciT130I CCWGG 1 cut(s) 657
BcnI CCSGG 2 cut(s) 509, 600
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 984
BfrI CTTAAG 1 cut(s) 827
Bme1390I CCNGG 3 cut(s) 509, 600, 657
BmgBI CACGTC 2 cut(s) 198, 946
BmiI GGNNCC 6 cut(s) 258, 267, 481, 497, 604, 782
BmrFI CCNGG 3 cut(s) 509, 600, 657
BmrI ACTGGG 2 cut(s) 262, 1090
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 2 cut(s) 262, 1090
BpiI GAAGAC 3 cut(s) 346, 545, 815
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpuMI CCSGG 2 cut(s) 509, 600
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 243, 285
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 3 cut(s) 259, 376, 529
Bse1I ACTGG 5 cut(s) 257, 481, 817, 841, 1096
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 243, 285
BseGI GGATG 4 cut(s) 112, 140, 433, 679
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 437, 506
BseNI ACTGG 5 cut(s) 257, 481, 817, 841, 1096
BseRI GAGGAG 3 cut(s) 71, 395, 701
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 7 cut(s) 91, 94, 267, 610, 632, 757, 779
Bsh1236I CGCG 2 cut(s) 278, 300
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 5 cut(s) 5, 275, 323, 380, 402
BshNI GGYRCC 5 cut(s) 256, 265, 479, 495, 602
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 523, 807
BsiSI CCGG 5 cut(s) 260, 377, 509, 530, 600
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 5 cut(s) 5, 275, 323, 380, 402
Bsp1286I GDGCHC 2 cut(s) 523, 807
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 4 cut(s) 73, 269, 276, 295
BspANI GGCC 5 cut(s) 5, 275, 323, 380, 402
BspCNI CTCAG 2 cut(s) 436, 507
BspFNI CGCG 2 cut(s) 278, 300
BspLI GGNNCC 6 cut(s) 258, 267, 481, 497, 604, 782
BspT107I GGYRCC 5 cut(s) 256, 265, 479, 495, 602
BspTI CTTAAG 1 cut(s) 827
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 259, 376, 529
BsrI ACTGG 5 cut(s) 257, 481, 817, 841, 1096
BssAI RCCGGY 3 cut(s) 259, 376, 529
BssECI CCNNGG 2 cut(s) 243, 285
BssMI GATC 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 3 cut(s) 330, 607, 935
BstACI GRCGYC 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 273, 293
BstDEI CTNAG 2 cut(s) 423, 515
BstF5I GGATG 4 cut(s) 112, 140, 433, 679
BstFNI CGCG 2 cut(s) 278, 300
BstHHI GCGC 3 cut(s) 280, 300, 474
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 265, 277, 297, 386
BstNI CCWGG 1 cut(s) 657
BstSCI CCNGG 3 cut(s) 507, 598, 655
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 2 cut(s) 278, 300
BstV1I GCAGC 7 cut(s) 91, 94, 267, 610, 632, 757, 779
BstV2I GAAGAC 3 cut(s) 346, 545, 815
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 5 cut(s) 5, 275, 323, 380, 402
BtrI CACGTC 2 cut(s) 198, 946
BtsCI GGATG 4 cut(s) 112, 140, 433, 679
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 4 cut(s) 393, 474, 646, 663
Cac8I GCNNGC 2 cut(s) 273, 293
CfoI GCGC 3 cut(s) 280, 300, 474
Cfr10I RCCGGY 3 cut(s) 259, 376, 529
CseI GACGC 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 655
Csp6I GTAC 2 cut(s) 340, 496
CviAII CATG 2 cut(s) 101, 1072
CviQI GTAC 2 cut(s) 340, 496
DdeI CTNAG 2 cut(s) 423, 515
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
EaeI YGGCCR 3 cut(s) 3, 273, 378
EagI CGGCCG 1 cut(s) 378
Ecl136II GAGCTC 2 cut(s) 521, 805
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 523, 807
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 2 cut(s) 521, 805
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 2 cut(s) 521, 805
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 523, 807
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 104, 1075
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 100, 1071
FauI CCCGC 1 cut(s) 80
FauNDI CATATG 1 cut(s) 952
FokI GGATG 4 cut(s) 99, 127, 440, 686
FriOI GRGCYC 2 cut(s) 523, 807
FspBI CTAG 1 cut(s) 155
FspI TGCGCA 1 cut(s) 473
GlaI GCGC 3 cut(s) 279, 299, 473
HaeIII GGCC 5 cut(s) 5, 275, 323, 380, 402
HapII CCGG 5 cut(s) 260, 377, 509, 530, 600
HgaI GACGC 1 cut(s) 195
HhaI GCGC 3 cut(s) 280, 300, 474
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 2 cut(s) 104, 1075
Hin6I GCGC 3 cut(s) 278, 298, 472
HinP1I GCGC 3 cut(s) 278, 298, 472
HinfI GANTC 3 cut(s) 367, 541, 977
HpaII CCGG 5 cut(s) 260, 377, 509, 530, 600
HphI GGTGA 4 cut(s) 6, 366, 968, 1015
Hpy188I TCNGA 4 cut(s) 211, 247, 616, 673
Hpy188III TCNNGA 3 cut(s) 311, 425, 808
Hpy99I CGWCG 5 cut(s) 186, 196, 199, 211, 223
HpyAV CCTTC 5 cut(s) 28, 377, 392, 757, 1030
HpyCH4III ACNGT 3 cut(s) 330, 607, 935
HpyCH4IV ACGT 3 cut(s) 197, 239, 945
HpyCH4V TGCA 3 cut(s) 152, 201, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 277, 297, 386
HpyF3I CTNAG 2 cut(s) 423, 515
HpySE526I ACGT 3 cut(s) 197, 239, 945
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 104, 1075
HspAI GCGC 3 cut(s) 278, 298, 472
KpnI GGTACC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 7 cut(s) 91, 94, 267, 610, 632, 757, 779
LweI GCATC 1 cut(s) 607
MabI ACCWGGT 1 cut(s) 655
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 197, 239, 945
MaeIII GTNAC 4 cut(s) 661, 691, 941, 946
MalI GATC 1 cut(s) 468
MbiI CCGCTC 1 cut(s) 295
MboI GATC 1 cut(s) 466
MboII GAAGA 6 cut(s) 60, 346, 550, 701, 815, 1077
MhlI GDGCHC 2 cut(s) 523, 807
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 40, 163, 610, 702
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 2 cut(s) 189, 1080
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 147, 486, 828, 1037
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 271, 623, 770
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 5 cut(s) 260, 377, 509, 530, 600
MspR9I CCNGG 3 cut(s) 509, 600, 657
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 2 cut(s) 278, 300
MwoI GCNNNNNNNGC 4 cut(s) 265, 277, 297, 386
NciI CCSGG 2 cut(s) 509, 600
NdeI CATATG 1 cut(s) 952
NdeII GATC 1 cut(s) 466
NlaIII CATG 2 cut(s) 104, 1075
NlaIV GGNNCC 6 cut(s) 258, 267, 481, 497, 604, 782
NmeAIII GCCGAG 2 cut(s) 652, 931
NmuCI GTSAC 3 cut(s) 661, 941, 946
NsbI TGCGCA 1 cut(s) 473
PceI AGGCCT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 215
PfeI GAWTC 2 cut(s) 367, 977
PflFI GACNNNGTC 1 cut(s) 350
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 2 cut(s) 523, 807
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 6 cut(s) 258, 267, 481, 497, 604, 782
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 2 cut(s) 623, 770
RsaI GTAC 2 cut(s) 341, 497
RsaNI GTAC 2 cut(s) 340, 496
SacI GAGCTC 2 cut(s) 523, 807
SaqAI TTAA 4 cut(s) 147, 486, 828, 1037
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 3 cut(s) 509, 600, 657
SduI GDGCHC 2 cut(s) 523, 807
SexAI ACCWGGT 1 cut(s) 655
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 984
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 4 cut(s) 40, 163, 610, 702
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 4 cut(s) 73, 269, 276, 295
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 2 cut(s) 523, 807
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 507, 598, 655
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 330, 607, 935
TaiI ACGT 3 cut(s) 200, 242, 948
TaqI TCGA 3 cut(s) 181, 594, 684
TasI AATT 4 cut(s) 40, 163, 610, 702
TauI GCSGC 3 cut(s) 271, 278, 298
TfiI GAWTC 2 cut(s) 367, 977
Tru1I TTAA 4 cut(s) 147, 486, 828, 1037
Tru9I TTAA 4 cut(s) 147, 486, 828, 1037
TscAI CASTG 4 cut(s) 400, 481, 646, 670
TseFI GTSAC 3 cut(s) 661, 941, 946
TseI GCWGC 7 cut(s) 104, 107, 280, 620, 623, 767, 770
Tsp45I GTSAC 3 cut(s) 661, 941, 946
TspDTI ATGAA 3 cut(s) 585, 695, 762
TspGWI ACGGA 2 cut(s) 330, 1052
TspRI CASTG 4 cut(s) 400, 481, 646, 670
Tth111I GACNNNGTC 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 827
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 2 cut(s) 610, 702
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.