MD15G1137600.v1.1

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014101
Physical Location & Seq
Reverse (-)
10100153 .. 10101636
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1137600.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGCTGACCCTTCACTTTCTCTCCCTCACCTCCACACCTCTCCTCTCCTCTCCTGCTACTCACTCTTTCCTCTACCCAAACATTACCAGTCTTCCTTCCATGGCCACTGCCTCACCCTTTTCCCCGGCATTGCCCCGAATTTACCACCCTAGTGCTCGTCCTACACCTGCTGCATCTGCATCTGCCCGCCCCCTCCTCACTTCCCAGAAACCGCCGCACAGCTTTTACCATGCTCATGCTGCTGCTAATCCAATTCCCGTATCATCATCTGTTACTGTGGGGAATTACCATCCTACCTCTCGGGTAGTCCTGACGACGAGGTGCAAGGCGATGGAGGTGTCCGTGGAGGAAGGGTCGGCGTCAGGGGGAGGAGGAGACAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCAAGGGGGGAGCGGCGGGTGATAATTCAGGATGGGGAGGCCATACTGTTGCTGTGGTACAAGGATCAGGTGTATGCAATAGAGAATCGGTCCCCTGCCGAAGGGGCTTACAGCGAAGGCCTTCTCAATGCCAAGCTCACCCAGGATGGGTGTATAGTTTGCCCATCAACTGATAGCACATTTGATCTGCGCACCGGAGGCATCAAGGAGTGGTATCCGAAAAACCCCGTGCTGAGAGTTCTTACACCTGCTTTGCGGACGCTTTTCGTTTACCCCGTCAAAACTGATGAAGAGAACATTTACATCAGCCTCGGCCCTGCTTCCGATGATGCTGCCGCTGCCGCCGAGATTGTCTTCAGTGGCAAGGCTCAACCTGGTTTTACAGCCACAGATGTCAATGTGGATGAGGTGAAAATGGTGGTGGATGAGGGTATGGAAGTGGCGTTCGGCTTCACGGGGAGGAACGAAATAATAAACGGGAAGGCGGCAGTGATTGGGTTCCTGTTGTTGTTAGATTTTGAACTCTTGACTGGGAAAGGTATTCTTAAGGGGACAGGCTTCTTGGACTTTATTTACTCTGTTTCTAATGCTTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

337

Amino Acids

35.91

Weight (kDa)

5.66

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 127 - 239 6.3e-21 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 175, 667
Acc16I TGCGCA 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 175, 667
AccB1I GGYRCC 2 cut(s) 385, 394
AccBSI CCGCTC 1 cut(s) 424
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 751
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 2 cut(s) 512, 558
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 1 cut(s) 932
AjnI CCWGG 2 cut(s) 552, 784
AleI CACNNNNGTG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 2 cut(s) 222, 547
AluI AGCT 2 cut(s) 222, 547
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 4 cut(s) 102, 450, 529, 724
ApeKI GCWGC 6 cut(s) 170, 239, 242, 409, 743, 749
ApoI RAATTY 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 2 cut(s) 409, 603
AspS9I GGNCC 2 cut(s) 501, 725
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 5 cut(s) 19, 105, 442, 541, 832
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 501
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 2 cut(s) 385, 394
BbsI GAAGAC 2 cut(s) 83, 757
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 6 cut(s) 157, 226, 229, 396, 730, 736
BccI CCATC 5 cut(s) 297, 325, 437, 551, 583
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciT130I CCWGG 2 cut(s) 554, 786
BciVI GTATCC 1 cut(s) 636
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 410
BfrI CTTAAG 1 cut(s) 956
BfuAI ACCTGC 2 cut(s) 175, 667
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 515
Bme1390I CCNGG 3 cut(s) 125, 554, 786
Bme18I GGWCC 1 cut(s) 501
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 501, 725
BmiI GGNNCC 4 cut(s) 387, 396, 503, 911
BmrFI CCNGG 3 cut(s) 125, 554, 786
BmrI ACTGGG 2 cut(s) 391, 951
BmsI GCATC 4 cut(s) 182, 188, 621, 730
BmuI ACTGGG 2 cut(s) 391, 951
BpiI GAAGAC 2 cut(s) 83, 757
BpuMI CCSGG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 6 cut(s) 99, 123, 342, 413, 552, 721
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 558
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 87, 386, 946
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 554, 786
BseDI CCNNGG 6 cut(s) 99, 123, 342, 413, 552, 721
BseGI GGATG 5 cut(s) 289, 448, 562, 820, 841
BseLI CCNNNNNNNGG 2 cut(s) 512, 558
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 3 cut(s) 87, 386, 946
BseRI GAGGAG 5 cut(s) 32, 37, 185, 384, 387
BseXI GCAGC 6 cut(s) 157, 226, 229, 396, 730, 736
BshFI GGCC 4 cut(s) 104, 452, 531, 726
BshNI GGYRCC 2 cut(s) 385, 394
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 125, 389, 606
BslFI GGGAC 2 cut(s) 487, 976
BslI CCNNNNNNNGG 2 cut(s) 512, 558
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 487, 976
BsnI GGCC 4 cut(s) 104, 452, 531, 726
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 475, 595
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 4 cut(s) 104, 452, 531, 726
BspCNI CTCAG 1 cut(s) 636
BspLI GGNNCC 4 cut(s) 387, 396, 503, 911
BspMI ACCTGC 2 cut(s) 175, 667
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 385, 394
BspTI CTTAAG 1 cut(s) 956
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 3 cut(s) 87, 386, 946
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 6 cut(s) 99, 123, 342, 413, 552, 721
BssMI GATC 2 cut(s) 475, 595
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 2 cut(s) 99, 413
Bst2UI CCWGG 2 cut(s) 554, 786
Bst4CI ACNGT 2 cut(s) 277, 459
Bst6I CTCTTC 1 cut(s) 696
BstACI GRCGYC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 956
BstC8I GCNNGC 2 cut(s) 187, 402
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 99, 342
BstENI CCTNNNNNAGG 1 cut(s) 510
BstF5I GGATG 5 cut(s) 289, 448, 562, 820, 841
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 409, 603
BstKTI GATC 2 cut(s) 478, 598
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 2 cut(s) 475, 595
BstMWI GCNNNNNNNGC 8 cut(s) 176, 239, 394, 406, 515, 609, 749, 752
BstNI CCWGG 2 cut(s) 554, 786
BstSCI CCNGG 3 cut(s) 123, 552, 784
BstV1I GCAGC 6 cut(s) 157, 226, 229, 396, 730, 736
BstV2I GAAGAC 2 cut(s) 83, 757
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 4 cut(s) 104, 452, 531, 726
BtgI CCRYGG 2 cut(s) 99, 342
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 5 cut(s) 289, 448, 562, 820, 841
BtsI GCAGTG 2 cut(s) 105, 906
BtsIMutI CAGTG 3 cut(s) 105, 775, 906
BveI ACCTGC 2 cut(s) 175, 667
Cac8I GCNNGC 2 cut(s) 187, 402
CfoI GCGC 2 cut(s) 409, 603
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 501, 725
CseI GACGC 2 cut(s) 348, 679
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 1 cut(s) 469
CviAII CATG 3 cut(s) 100, 230, 236
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 644
DpnI GATC 2 cut(s) 477, 597
DpnII GATC 2 cut(s) 475, 595
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 99, 413
Eco147I AGGCCT 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoRII CCWGG 2 cut(s) 552, 784
EcoT14I CCWWGG 2 cut(s) 99, 413
ErhI CCWWGG 2 cut(s) 99, 413
FaeI CATG 3 cut(s) 103, 233, 239
FaiI YATR 7 cut(s) 101, 231, 237, 455, 486, 566, 845
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 2 cut(s) 487, 976
FatI CATG 3 cut(s) 99, 229, 235
FauI CCCGC 2 cut(s) 194, 420
FokI GGATG 5 cut(s) 276, 455, 569, 827, 848
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 602
GlaI GCGC 2 cut(s) 408, 602
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 4 cut(s) 104, 452, 531, 726
HapII CCGG 3 cut(s) 125, 389, 606
HgaI GACGC 2 cut(s) 348, 679
HhaI GCGC 2 cut(s) 409, 603
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 103, 233, 239
Hin6I GCGC 2 cut(s) 407, 601
HinP1I GCGC 2 cut(s) 407, 601
HinfI GANTC 1 cut(s) 496
HpaII CCGG 3 cut(s) 125, 389, 606
HphI GGTGA 5 cut(s) 19, 105, 442, 541, 832
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 2 cut(s) 630, 736
Hpy188III TCNNGA 3 cut(s) 310, 440, 937
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 7 cut(s) 20, 105, 344, 506, 521, 542, 886
HpyCH4III ACNGT 2 cut(s) 277, 459
HpyCH4V TGCA 5 cut(s) 173, 179, 324, 488, 1006
HpyF10VI GCNNNNNNNGC 8 cut(s) 176, 239, 394, 406, 515, 609, 749, 752
HpyF3I CTNAG 1 cut(s) 644
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 103, 233, 239
HspAI GCGC 2 cut(s) 407, 601
Kzo9I GATC 2 cut(s) 475, 595
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 6 cut(s) 157, 226, 229, 396, 730, 736
LweI GCATC 4 cut(s) 182, 188, 621, 730
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 477, 597
MbiI CCGCTC 1 cut(s) 424
MboI GATC 2 cut(s) 475, 595
MboII GAAGA 3 cut(s) 83, 713, 757
MhlI GDGCHC 1 cut(s) 157
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 4 cut(s) 138, 252, 283, 435
MluNI TGGCCA 1 cut(s) 104
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 1 cut(s) 104
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 2 cut(s) 150, 234
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 400, 749
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 3 cut(s) 125, 389, 606
MspR9I CCNGG 3 cut(s) 125, 554, 786
MvaI CCWGG 2 cut(s) 554, 786
MwoI GCNNNNNNNGC 8 cut(s) 176, 239, 394, 406, 515, 609, 749, 752
NciI CCSGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 475, 595
NlaIII CATG 3 cut(s) 103, 233, 239
NlaIV GGNNCC 4 cut(s) 387, 396, 503, 911
NmeAIII GCCGAG 2 cut(s) 702, 781
NsbI TGCGCA 1 cut(s) 602
OliI CACNNNNGTG 1 cut(s) 150
PaqCI CACCTGC 2 cut(s) 175, 667
PceI AGGCCT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 552, 784
PspGI CCWGG 2 cut(s) 552, 784
PspN4I GGNNCC 4 cut(s) 387, 396, 503, 911
PspPI GGNCC 2 cut(s) 501, 725
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 2 cut(s) 150, 234
SaqAI TTAA 1 cut(s) 957
Sau3AI GATC 2 cut(s) 475, 595
Sau96I GGNCC 2 cut(s) 501, 725
ScrFI CCNGG 3 cut(s) 125, 554, 786
SduI GDGCHC 1 cut(s) 157
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 4 cut(s) 182, 188, 621, 730
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 150, 234
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 4 cut(s) 138, 252, 283, 435
SseBI AGGCCT 1 cut(s) 531
SspMI CTAG 1 cut(s) 150
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 123, 552, 784
StyI CCWWGG 2 cut(s) 99, 413
TaaI ACNGT 2 cut(s) 277, 459
TaqII GACCGA 1 cut(s) 489
TasI AATT 4 cut(s) 138, 252, 283, 435
TauI GCSGC 7 cut(s) 217, 400, 407, 427, 749, 755, 899
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 3 cut(s) 112, 775, 906
TseI GCWGC 6 cut(s) 170, 239, 242, 409, 743, 749
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 3 cut(s) 112, 775, 906
Vha464I CTTAAG 1 cut(s) 956
VpaK11BI GGWCC 1 cut(s) 501
XagI CCTNNNNNAGG 1 cut(s) 510
XapI RAATTY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.