RchiOBHm_Chr2g0123251

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014101
Physical Location & Seq
Forward (+)
36390109 .. 36392345
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49556

Sequence Viewer

Length: 873 bp
ATGGCCAACGCCTCACCCTTCGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCCCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCTTTACCATGCTCATCCCATCTCATCGTCATCGTCATCCGTTAATGCACTAGGAAAGAATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGGTGTCGTCGTCCTCTGTTGCCGAAGCGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACCAAGTCTTCGCCATTGAGAATCGCTCCCCGGCCGAAGGAGCTTACAGTGAGGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGGACTGGTACCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCTGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCTGGTGTCACTGCTTCTGATGTCAATATCGAGGAGGTGAAAATGGTGGTTGATGAGGGCTTAGAAGGAGGGGCTTTTGGTTTCACAACGAGGAATGAAATAATAAATGGGAAGGCAGCTACGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTCTCAAATGCTCTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

290

Amino Acids

31.19

Weight (kDa)

5.66

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 80 - 192 2.5e-20 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 467, 483
AccB1I GGYRCC 5 cut(s) 244, 253, 467, 483, 590
AccBSI CCGCTC 1 cut(s) 283
AccII CGCG 1 cut(s) 288
AciI CCGC 5 cut(s) 73, 257, 263, 283, 460
AcoI YGGCCR 2 cut(s) 3, 366
AcsI RAATTY 1 cut(s) 598
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 3 cut(s) 329, 469, 485
AfiI CCNNNNNNNGG 1 cut(s) 371
AflII CTTAAG 1 cut(s) 818
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 6 cut(s) 377, 406, 509, 611, 761, 796
AluI AGCT 6 cut(s) 377, 406, 509, 611, 761, 796
Alw21I GWGCWC 2 cut(s) 511, 798
Alw26I GTCTC 1 cut(s) 859
AoxI GGCC 4 cut(s) 3, 309, 366, 388
ApeKI GCWGC 4 cut(s) 268, 608, 611, 758
ApoI RAATTY 1 cut(s) 598
ArsI GACNNNNNNTTYG 4 cut(s) 324, 326, 356, 358
Asp718I GGTACC 2 cut(s) 467, 483
AspLEI GCGC 2 cut(s) 268, 288
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 3 cut(s) 365, 497, 588
AsuHPI GGTGA 2 cut(s) 6, 691
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BanII GRGCYC 2 cut(s) 511, 798
BbsI GAAGAC 2 cut(s) 334, 806
Bbv12I GWGCWC 2 cut(s) 511, 798
BbvI GCAGC 4 cut(s) 255, 598, 620, 770
BccI CCATC 4 cut(s) 73, 119, 410, 442
BciT130I CCWGG 1 cut(s) 645
BcnI CCSGG 3 cut(s) 365, 497, 588
BcoDI GTCTC 1 cut(s) 859
BfaI CTAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 7 cut(s) 257, 264, 269, 284, 609, 612, 759
BlsI GCNGC 7 cut(s) 258, 265, 270, 285, 610, 613, 760
Bme1390I CCNGG 4 cut(s) 365, 497, 588, 645
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 6 cut(s) 246, 255, 469, 485, 592, 773
BmrFI CCNGG 4 cut(s) 365, 497, 588, 645
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 2 cut(s) 334, 806
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 1 cut(s) 851
BpuMI CCSGG 3 cut(s) 365, 497, 588
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 231, 273, 363
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 2 cut(s) 247, 517
Bse1I ACTGG 5 cut(s) 245, 469, 808, 832, 868
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 3 cut(s) 231, 273, 363
BseGI GGATG 3 cut(s) 106, 128, 421
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 425, 494
BseNI ACTGG 5 cut(s) 245, 469, 808, 832, 868
BseRI GAGGAG 3 cut(s) 71, 383, 689
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 4 cut(s) 255, 598, 620, 770
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 4 cut(s) 5, 311, 368, 390
BshNI GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 511, 798
BsiSI CCGG 5 cut(s) 248, 365, 497, 518, 588
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 859
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 4 cut(s) 5, 311, 368, 390
Bsp1286I GDGCHC 2 cut(s) 511, 798
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 5 cut(s) 73, 257, 263, 283, 460
BspANI GGCC 4 cut(s) 5, 311, 368, 390
BspCNI CTCAG 2 cut(s) 424, 495
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 6 cut(s) 246, 255, 469, 485, 592, 773
BspT107I GGYRCC 5 cut(s) 244, 253, 467, 483, 590
BspTI CTTAAG 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 283
BsrFI RCCGGY 2 cut(s) 247, 517
BsrI ACTGG 5 cut(s) 245, 469, 808, 832, 868
BssAI RCCGGY 2 cut(s) 247, 517
BssECI CCNNGG 3 cut(s) 231, 273, 363
BssMI GATC 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 318, 383, 595
BstACI GRCGYC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 2 cut(s) 261, 281
BstDEI CTNAG 3 cut(s) 411, 503, 703
BstF5I GGATG 3 cut(s) 106, 128, 421
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 268, 288
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 859
BstMBI GATC 1 cut(s) 454
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 4 cut(s) 363, 495, 586, 643
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 255, 598, 620, 770
BstV2I GAAGAC 2 cut(s) 334, 806
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 4 cut(s) 5, 311, 368, 390
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 106, 128, 421
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 3 cut(s) 388, 634, 651
Cac8I GCNNGC 2 cut(s) 261, 281
CfoI GCGC 2 cut(s) 268, 288
Cfr10I RCCGGY 2 cut(s) 247, 517
Cfr13I GGNCC 1 cut(s) 388
CseI GACGC 2 cut(s) 183, 216
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 3 cut(s) 328, 468, 484
CviAII CATG 1 cut(s) 101
CviQI GTAC 3 cut(s) 328, 468, 484
DdeI CTNAG 3 cut(s) 411, 503, 703
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 3, 366
EagI CGGCCG 1 cut(s) 366
Ecl136II GAGCTC 2 cut(s) 509, 796
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 511, 798
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 2 cut(s) 509, 796
EcoICRI GAGCTC 2 cut(s) 509, 796
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 2 cut(s) 511, 798
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 314, 425, 537
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 100
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 7 cut(s) 257, 264, 269, 284, 609, 612, 759
FokI GGATG 3 cut(s) 93, 115, 428
FriOI GRGCYC 2 cut(s) 511, 798
Fsp4HI GCNGC 7 cut(s) 257, 264, 269, 284, 609, 612, 759
FspBI CTAG 1 cut(s) 143
GlaI GCGC 2 cut(s) 267, 287
GluI GCNGC 7 cut(s) 257, 264, 269, 284, 609, 612, 759
GsuI CTGGAG 1 cut(s) 851
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 4 cut(s) 5, 311, 368, 390
HapII CCGG 5 cut(s) 248, 365, 497, 518, 588
HgaI GACGC 2 cut(s) 183, 216
HhaI GCGC 2 cut(s) 268, 288
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 266, 286
HinP1I GCGC 2 cut(s) 266, 286
HinfI GANTC 2 cut(s) 355, 529
HpaII CCGG 5 cut(s) 248, 365, 497, 518, 588
HphI GGTGA 2 cut(s) 6, 691
Hpy188I TCNGA 4 cut(s) 199, 235, 604, 661
Hpy188III TCNNGA 3 cut(s) 299, 413, 799
Hpy99I CGWCG 5 cut(s) 174, 184, 187, 199, 211
HpyAV CCTTC 4 cut(s) 28, 365, 701, 748
HpyCH4III ACNGT 3 cut(s) 318, 383, 595
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 140, 189, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
HpyF3I CTNAG 3 cut(s) 411, 503, 703
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 266, 286
KpnI GGTACC 2 cut(s) 471, 487
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 2 cut(s) 365, 374
Lsp1109I GCAGC 4 cut(s) 255, 598, 620, 770
LweI GCATC 1 cut(s) 595
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 649
MalI GATC 1 cut(s) 456
MbiI CCGCTC 1 cut(s) 283
MboI GATC 1 cut(s) 454
MboII GAAGA 3 cut(s) 60, 334, 806
MhlI GDGCHC 2 cut(s) 511, 798
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 40, 151, 598
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 135, 474, 819
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 259, 611
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 5 cut(s) 248, 365, 497, 518, 588
MspR9I CCNGG 4 cut(s) 365, 497, 588, 645
MvaI CCWGG 1 cut(s) 645
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 253, 265, 285, 374
NciI CCSGG 3 cut(s) 365, 497, 588
NdeII GATC 1 cut(s) 454
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 6 cut(s) 246, 255, 469, 485, 592, 773
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 2 cut(s) 191, 203
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 7 cut(s) 258, 265, 270, 285, 610, 613, 760
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp124BI GAGCTC 2 cut(s) 511, 798
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 6 cut(s) 246, 255, 469, 485, 592, 773
PspPI GGNCC 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 3 cut(s) 329, 469, 485
RsaNI GTAC 3 cut(s) 328, 468, 484
SacI GAGCTC 2 cut(s) 511, 798
SaqAI TTAA 3 cut(s) 135, 474, 819
SatI GCNGC 7 cut(s) 257, 264, 269, 284, 609, 612, 759
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 4 cut(s) 365, 497, 588, 645
SduI GDGCHC 2 cut(s) 511, 798
SexAI ACCWGGT 1 cut(s) 643
SfaNI GCATC 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 3 cut(s) 40, 151, 598
SsiI CCGC 5 cut(s) 73, 257, 263, 283, 460
SspMI CTAG 1 cut(s) 143
SstI GAGCTC 2 cut(s) 511, 798
StyD4I CCNGG 4 cut(s) 363, 495, 586, 643
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 318, 383, 595
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 169, 582, 672
TasI AATT 3 cut(s) 40, 151, 598
TauI GCSGC 3 cut(s) 259, 266, 286
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 135, 474, 819
Tru9I TTAA 3 cut(s) 135, 474, 819
TscAI CASTG 3 cut(s) 388, 634, 658
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 268, 608, 611, 758
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 573, 753
TspGWI ACGGA 2 cut(s) 121, 318
TspRI CASTG 3 cut(s) 388, 634, 658
Tth111I GACNNNGTC 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 818
XapI RAATTY 1 cut(s) 598
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.