pycom15g12400

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014101
Physical Location & Seq
Reverse (-)
8475978 .. 8477081
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12400.1

Sequence Viewer

Length: 903 bp
ATGGCCACTGCCTCACCCTTTGCCCCGGCATTGCCCCGAAGTTACCACCCTAGTGCTCGTCCTACACCTGCTGCATCTGCATCTGCCCGCCCCCTCCTCACTTCCCAGAAACCGCCGCACAGAAATGCTGCTGCTAATCCAATTCCCGTATCATCATCCGTTACTGTGGGGAATTACCATTCTACCTCTCGGGTAATCCTGACGACGAGGTGCAAGGCGATGGAGGTGTCGGTGGAGGAAGGGTCGGCGTCAGGGGGAGGAGGAGGAGACAACTGGGTGCCGGTGGTGCCGCTGGCAGCGCTGCCAAGGGGGGAGCGGCGGGTGATAATTCAGGATGGGGAGGCCATACTGTTGCTGTGGTACAAGGATCAGGTGTATGCAATAGAGAATCGGTCCCCGGCCGAAGGGGCTTACAGCGAAGGCCTTCTCAATGCCAAGCTCACCCAGGATGGGTGTATAGTTTGCCCATCAACTGATAGCACATTTGATCTGCTCACCGGCGGCATCAAGGAGTGGTATCCGAAAAACCCCGTGCTGAGAGTTCTTACACCCGCTTTGCGGACGCTTTTCGTTTACCCCGTCAAAACTGATGAAGAGAACATTTACATCAGCCTCGGCCCTGCTTCCGTTGATGCTGCCGCTGCTGCCGAGATTGTCTTCAGTGGCAAGGCTCAACCTGGTTTTACAGCCGCTGATGTCAATGTGGATGAGGTGAAAATGGTGGTGGATGAGGATCTGGACGCGGCGTTCGGCTTCACGGGGAGGAATGAAATAATAAACGGGAAGGCGGCAGTGATCGGGTTCCTGTTGTTGTTAGATTTTGAACTCTTGACTGGGAAAGGTCTTCTTAAGGGGACAGGCTTCTTGGACTTTATTTACTCTGTTTCTAATGCTTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

301

Amino Acids

31.79

Weight (kDa)

5.2

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 91 - 203 2.9e-20 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 277, 286
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 1 cut(s) 743
AclWI GGATC 2 cut(s) 375, 741
AcoI YGGCCR 2 cut(s) 3, 399
AcuI CTGAAG 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 362
AfeI AGCGCT 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 404, 450, 558
AflII CTTAAG 1 cut(s) 848
AgsI TTSAA 1 cut(s) 824
AjnI CCWGG 2 cut(s) 444, 676
AleI CACNNNNGTG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 731, 763
AluBI AGCT 1 cut(s) 439
AluI AGCT 1 cut(s) 439
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 2 cut(s) 375, 741
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 300
AoxI GGCC 5 cut(s) 3, 342, 399, 421, 616
ApeKI GCWGC 8 cut(s) 71, 128, 131, 296, 301, 635, 641, 644
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 393, 617
AsuC2I CCSGG 2 cut(s) 26, 398
AsuHPI GGTGA 5 cut(s) 6, 334, 433, 487, 724
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 393
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 277, 286
BbsI GAAGAC 2 cut(s) 649, 836
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 8 cut(s) 58, 115, 118, 288, 308, 622, 628, 631
BccI CCATC 4 cut(s) 214, 329, 443, 475
BciT130I CCWGG 2 cut(s) 446, 678
BciVI GTATCC 1 cut(s) 528
BcnI CCSGG 2 cut(s) 26, 398
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 302
BfrI CTTAAG 1 cut(s) 848
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 407
Bme1390I CCNGG 4 cut(s) 26, 398, 446, 678
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 393, 617
BmiI GGNNCC 4 cut(s) 279, 288, 395, 803
BmrFI CCNGG 4 cut(s) 26, 398, 446, 678
BmrI ACTGGG 2 cut(s) 283, 843
BmsI GCATC 4 cut(s) 83, 89, 513, 622
BmuI ACTGGG 2 cut(s) 283, 843
BpiI GAAGAC 2 cut(s) 649, 836
BpuMI CCSGG 2 cut(s) 26, 398
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 5 cut(s) 24, 305, 396, 444, 613
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 450, 558
Bse118I RCCGGY 2 cut(s) 280, 497
Bse1I ACTGG 2 cut(s) 278, 838
Bse3DI GCAATG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 2 cut(s) 446, 678
BseDI CCNNGG 5 cut(s) 24, 305, 396, 444, 613
BseGI GGATG 5 cut(s) 155, 340, 454, 712, 733
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 3 cut(s) 404, 450, 558
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 278, 838
BseRI GAGGAG 4 cut(s) 86, 273, 276, 279
BseX3I CGGCCG 1 cut(s) 399
BseXI GCAGC 8 cut(s) 58, 115, 118, 288, 308, 622, 628, 631
Bsh1236I CGCG 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 5 cut(s) 5, 344, 401, 423, 618
BshNI GGYRCC 2 cut(s) 277, 286
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 4 cut(s) 26, 281, 398, 498
BslFI GGGAC 2 cut(s) 379, 868
BslI CCNNNNNNNGG 3 cut(s) 404, 450, 558
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 379, 868
BsnI GGCC 5 cut(s) 5, 344, 401, 423, 618
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 4 cut(s) 367, 487, 733, 795
BspANI GGCC 5 cut(s) 5, 344, 401, 423, 618
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 4 cut(s) 279, 288, 395, 803
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 2 cut(s) 375, 741
BspT107I GGYRCC 2 cut(s) 277, 286
BspTI CTTAAG 1 cut(s) 848
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 2 cut(s) 280, 497
BsrI ACTGG 2 cut(s) 278, 838
BssAI RCCGGY 2 cut(s) 280, 497
BssECI CCNNGG 5 cut(s) 24, 305, 396, 444, 613
BssMI GATC 4 cut(s) 367, 487, 733, 795
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 446, 678
Bst4CI ACNGT 2 cut(s) 166, 351
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 248
BstAFI CTTAAG 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 88, 294
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 5 cut(s) 155, 340, 454, 712, 733
BstFNI CGCG 1 cut(s) 743
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 4 cut(s) 370, 490, 736, 798
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 4 cut(s) 367, 487, 733, 795
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 6 cut(s) 77, 286, 298, 407, 641, 644
BstNI CCWGG 2 cut(s) 446, 678
BstSCI CCNGG 4 cut(s) 24, 396, 444, 676
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 8 cut(s) 58, 115, 118, 288, 308, 622, 628, 631
BstV2I GAAGAC 2 cut(s) 649, 836
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
BstZI CGGCCG 1 cut(s) 399
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 5 cut(s) 5, 344, 401, 423, 618
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 5 cut(s) 155, 340, 454, 712, 733
BtsI GCAGTG 2 cut(s) 6, 798
BtsIMutI CAGTG 3 cut(s) 6, 667, 798
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 88, 294
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 2 cut(s) 280, 497
Cfr13I GGNCC 2 cut(s) 393, 617
CseI GACGC 3 cut(s) 237, 571, 749
CsiI ACCWGGT 1 cut(s) 676
Csp6I GTAC 1 cut(s) 361
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 536
DpnI GATC 4 cut(s) 369, 489, 735, 797
DpnII GATC 4 cut(s) 367, 487, 733, 795
EaeI YGGCCR 2 cut(s) 3, 399
EagI CGGCCG 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EclXI CGGCCG 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 393
Eco47III AGCGCT 1 cut(s) 300
Eco52I CGGCCG 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 444, 676
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaiI YATR 3 cut(s) 347, 378, 458
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 2 cut(s) 379, 868
FauI CCCGC 3 cut(s) 95, 312, 559
FokI GGATG 5 cut(s) 142, 347, 461, 719, 740
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 5, 344, 401, 423, 618
HapII CCGG 4 cut(s) 26, 281, 398, 498
HgaI GACGC 3 cut(s) 237, 571, 749
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 388
HpaII CCGG 4 cut(s) 26, 281, 398, 498
HphI GGTGA 5 cut(s) 6, 334, 433, 487, 724
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 4 cut(s) 199, 332, 737, 829
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 5 cut(s) 233, 398, 413, 434, 778
HpyCH4III ACNGT 2 cut(s) 166, 351
HpyCH4V TGCA 5 cut(s) 74, 80, 213, 380, 898
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 286, 298, 407, 641, 644
HpyF3I CTNAG 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 248
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 4 cut(s) 367, 487, 733, 795
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 8 cut(s) 58, 115, 118, 288, 308, 622, 628, 631
LweI GCATC 4 cut(s) 83, 89, 513, 622
MabI ACCWGGT 1 cut(s) 676
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 41, 160
MalI GATC 4 cut(s) 369, 489, 735, 797
MbiI CCGCTC 1 cut(s) 316
MboI GATC 4 cut(s) 367, 487, 733, 795
MboII GAAGA 3 cut(s) 605, 649, 836
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 141, 172, 327
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 423
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 849
MslI CAYNNNNRTG 2 cut(s) 51, 123
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 292, 641, 692
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 4 cut(s) 26, 281, 398, 498
MspR9I CCNGG 4 cut(s) 26, 398, 446, 678
MvaI CCWGG 2 cut(s) 446, 678
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 6 cut(s) 77, 286, 298, 407, 641, 644
NciI CCSGG 2 cut(s) 26, 398
NdeII GATC 4 cut(s) 367, 487, 733, 795
NlaIV GGNNCC 4 cut(s) 279, 288, 395, 803
NmeAIII GCCGAG 2 cut(s) 594, 673
OliI CACNNNNGTG 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 444, 676
PspGI CCWGG 2 cut(s) 444, 676
PspN4I GGNNCC 4 cut(s) 279, 288, 395, 803
PspPI GGNCC 2 cut(s) 393, 617
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 733
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 2 cut(s) 51, 123
SaqAI TTAA 1 cut(s) 849
Sau3AI GATC 4 cut(s) 367, 487, 733, 795
Sau96I GGNCC 2 cut(s) 393, 617
ScrFI CCNGG 4 cut(s) 26, 398, 446, 678
SduI GDGCHC 1 cut(s) 58
SetI ASST 9 cut(s) 70, 188, 212, 228, 375, 441, 679, 714, 844
SexAI ACCWGGT 1 cut(s) 676
SfaNI GCATC 4 cut(s) 83, 89, 513, 622
SgrAI CRCCGGYG 1 cut(s) 497
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 51, 123
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 3 cut(s) 141, 172, 327
SseBI AGGCCT 1 cut(s) 423
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 24, 396, 444, 676
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 166, 351
TaqII GACCGA 1 cut(s) 381
TasI AATT 3 cut(s) 141, 172, 327
TauI GCSGC 8 cut(s) 118, 292, 319, 504, 641, 692, 746, 791
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 3 cut(s) 13, 667, 798
TseI GCWGC 8 cut(s) 71, 128, 131, 296, 301, 635, 641, 644
TspDTI ATGAA 2 cut(s) 606, 783
TspGWI ACGGA 2 cut(s) 148, 616
TspRI CASTG 3 cut(s) 13, 667, 798
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.