Rh2DG327400

Rieske-like [2Fe-2S] domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014101
Physical Location & Seq
Forward (+)
41344827 .. 41346855
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG327400.1

Sequence Viewer

Length: 876 bp
ATGGCCAACGCCTCACCCTTCGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCCCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCTTTACCATGCTCATCCCATCTCATCGTCATCATCATCCGTTAATAATGCACTAGGAAAGAATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGGTGTCGTCGTCCTCTGTTGCCGAAGCGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACCAAGTCTTCGCCATTGAGAATCGCTCACCGGCCGAAGGAGCTTACAGTGAGGGCCTCCTCAATGCGAAGCTCACTCAGGATGGGTGTATAGTGTGTCCATCAACTGATAGCACATTTGATCTGCGGACTGGTACCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCCGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCTGGTGTCACTGCTTCGGATGTCAATATCGAGGAGGTGAAAATGGTGGTTGATGAGGGCTTAGAAGGAGGGGCTTTTGGTTTCACAACGAGGAATGAAATAATAAATGGGAAGGCAGCTACGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTCTCAAATGCTCTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rieske_2

Protein Analysis

291

Amino Acids

31.31

Weight (kDa)

5.66

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske_2 PF13806 81 - 193 2.5e-20 Rieske-like [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71500
fragaria_vesca FvH4_1g25280 FvH4_1g25280
malus_domestica MD15G1137600.v1.1
prunus_persica Prupe.1G128000_v2.0.a1
pyrus_communis pycom15g12400
rosa_chinensis RchiOBHm_Chr2g0123251
rosa_laevigata RLG00000018744
rosa_multiflora Rmu_sc0011914.1_g000003
rosa_roxburghii Rroxscaffold_2G00120820
rosa_rugosa Rorug02G0244200
rosa_samantha Rh2AG303400 Rh2BG311300 Rh2CG290000 Rh2DG327400
rosa_wichuraiana Rw0G013110 Rw2G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 470, 486
AccB1I GGYRCC 5 cut(s) 247, 256, 470, 486, 593
AccBSI CCGCTC 1 cut(s) 286
AccII CGCG 1 cut(s) 291
AciI CCGC 6 cut(s) 73, 260, 266, 286, 463, 549
AcoI YGGCCR 2 cut(s) 3, 369
AcsI RAATTY 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 3 cut(s) 332, 472, 488
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 1 cut(s) 821
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 6 cut(s) 380, 409, 512, 614, 764, 799
AluI AGCT 6 cut(s) 380, 409, 512, 614, 764, 799
Alw21I GWGCWC 2 cut(s) 514, 801
Alw26I GTCTC 1 cut(s) 862
AoxI GGCC 4 cut(s) 3, 312, 369, 391
ApeKI GCWGC 4 cut(s) 271, 611, 614, 761
ApoI RAATTY 1 cut(s) 601
ArsI GACNNNNNNTTYG 4 cut(s) 327, 329, 359, 361
Asp718I GGTACC 2 cut(s) 470, 486
AspLEI GCGC 2 cut(s) 271, 291
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 500, 591
AsuHPI GGTGA 3 cut(s) 6, 357, 694
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 5 cut(s) 247, 256, 470, 486, 593
BanII GRGCYC 2 cut(s) 514, 801
BbsI GAAGAC 2 cut(s) 337, 809
Bbv12I GWGCWC 2 cut(s) 514, 801
BbvI GCAGC 4 cut(s) 258, 601, 623, 773
BccI CCATC 4 cut(s) 73, 119, 413, 445
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 2 cut(s) 500, 591
BcoDI GTCTC 1 cut(s) 862
BfaI CTAG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 821
BisI GCNGC 7 cut(s) 260, 267, 272, 287, 612, 615, 762
BlsI GCNGC 7 cut(s) 261, 268, 273, 288, 613, 616, 763
Bme1390I CCNGG 3 cut(s) 500, 591, 648
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 6 cut(s) 249, 258, 472, 488, 595, 776
BmrFI CCNGG 3 cut(s) 500, 591, 648
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 337, 809
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 854
BpuMI CCSGG 2 cut(s) 500, 591
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 234, 276
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 3 cut(s) 250, 367, 520
Bse1I ACTGG 5 cut(s) 248, 472, 811, 835, 871
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 234, 276
BseGI GGATG 4 cut(s) 106, 128, 424, 670
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 428, 497
BseNI ACTGG 5 cut(s) 248, 472, 811, 835, 871
BseRI GAGGAG 3 cut(s) 71, 386, 692
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 258, 601, 623, 773
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 4 cut(s) 5, 314, 371, 393
BshNI GGYRCC 5 cut(s) 247, 256, 470, 486, 593
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 514, 801
BsiSI CCGG 5 cut(s) 251, 368, 500, 521, 591
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 862
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 4 cut(s) 5, 314, 371, 393
Bsp1286I GDGCHC 2 cut(s) 514, 801
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 6 cut(s) 73, 260, 266, 286, 463, 549
BspANI GGCC 4 cut(s) 5, 314, 371, 393
BspCNI CTCAG 2 cut(s) 427, 498
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 6 cut(s) 249, 258, 472, 488, 595, 776
BspT107I GGYRCC 5 cut(s) 247, 256, 470, 486, 593
BspTI CTTAAG 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 286
BsrFI RCCGGY 3 cut(s) 250, 367, 520
BsrI ACTGG 5 cut(s) 248, 472, 811, 835, 871
BssAI RCCGGY 3 cut(s) 250, 367, 520
BssECI CCNNGG 2 cut(s) 234, 276
BssMI GATC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 321, 386, 598
BstACI GRCGYC 1 cut(s) 197
BstAFI CTTAAG 1 cut(s) 821
BstC8I GCNNGC 2 cut(s) 264, 284
BstDEI CTNAG 3 cut(s) 414, 506, 706
BstF5I GGATG 4 cut(s) 106, 128, 424, 670
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 271, 291
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 1 cut(s) 862
BstMBI GATC 1 cut(s) 457
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 256, 268, 288, 377
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 498, 589, 646
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 258, 601, 623, 773
BstV2I GAAGAC 2 cut(s) 337, 809
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 4 cut(s) 5, 314, 371, 393
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 4 cut(s) 106, 128, 424, 670
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 3 cut(s) 391, 637, 654
Cac8I GCNNGC 2 cut(s) 264, 284
CfoI GCGC 2 cut(s) 271, 291
Cfr10I RCCGGY 3 cut(s) 250, 367, 520
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 2 cut(s) 186, 219
CsiI ACCWGGT 1 cut(s) 646
Csp6I GTAC 3 cut(s) 331, 471, 487
CviAII CATG 1 cut(s) 101
CviQI GTAC 3 cut(s) 331, 471, 487
DdeI CTNAG 3 cut(s) 414, 506, 706
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
EaeI YGGCCR 2 cut(s) 3, 369
EagI CGGCCG 1 cut(s) 369
Ecl136II GAGCTC 2 cut(s) 512, 799
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 514, 801
Eco52I CGGCCG 1 cut(s) 369
Eco53kI GAGCTC 2 cut(s) 512, 799
EcoICRI GAGCTC 2 cut(s) 512, 799
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 514, 801
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 317, 428, 540
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 100
FauI CCCGC 2 cut(s) 80, 556
Fnu4HI GCNGC 7 cut(s) 260, 267, 272, 287, 612, 615, 762
FokI GGATG 4 cut(s) 93, 115, 431, 677
FriOI GRGCYC 2 cut(s) 514, 801
Fsp4HI GCNGC 7 cut(s) 260, 267, 272, 287, 612, 615, 762
FspBI CTAG 1 cut(s) 146
GlaI GCGC 2 cut(s) 270, 290
GluI GCNGC 7 cut(s) 260, 267, 272, 287, 612, 615, 762
GsuI CTGGAG 1 cut(s) 854
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 4 cut(s) 5, 314, 371, 393
HapII CCGG 5 cut(s) 251, 368, 500, 521, 591
HgaI GACGC 2 cut(s) 186, 219
HhaI GCGC 2 cut(s) 271, 291
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 269, 289
HinP1I GCGC 2 cut(s) 269, 289
HinfI GANTC 2 cut(s) 358, 532
HpaII CCGG 5 cut(s) 251, 368, 500, 521, 591
HphI GGTGA 3 cut(s) 6, 357, 694
Hpy188I TCNGA 4 cut(s) 202, 238, 607, 664
Hpy188III TCNNGA 3 cut(s) 302, 416, 802
Hpy99I CGWCG 5 cut(s) 177, 187, 190, 202, 214
HpyAV CCTTC 4 cut(s) 28, 368, 704, 751
HpyCH4III ACNGT 3 cut(s) 321, 386, 598
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 143, 192, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 268, 288, 377
HpyF3I CTNAG 3 cut(s) 414, 506, 706
HpySE526I ACGT 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 269, 289
KpnI GGTACC 2 cut(s) 474, 490
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 4 cut(s) 258, 601, 623, 773
LweI GCATC 1 cut(s) 598
MabI ACCWGGT 1 cut(s) 646
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 652
MalI GATC 1 cut(s) 459
MbiI CCGCTC 1 cut(s) 286
MboI GATC 1 cut(s) 457
MboII GAAGA 3 cut(s) 60, 337, 809
MhlI GDGCHC 2 cut(s) 514, 801
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 40, 154, 601
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 135, 477, 822
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 262, 614
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 5 cut(s) 251, 368, 500, 521, 591
MspR9I CCNGG 3 cut(s) 500, 591, 648
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 256, 268, 288, 377
NciI CCSGG 2 cut(s) 500, 591
NdeII GATC 1 cut(s) 457
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 6 cut(s) 249, 258, 472, 488, 595, 776
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 1 cut(s) 652
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 206
PfeI GAWTC 1 cut(s) 358
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 7 cut(s) 261, 268, 273, 288, 613, 616, 763
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp124BI GAGCTC 2 cut(s) 514, 801
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 6 cut(s) 249, 258, 472, 488, 595, 776
PspPI GGNCC 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 332, 472, 488
RsaNI GTAC 3 cut(s) 331, 471, 487
SacI GAGCTC 2 cut(s) 514, 801
SaqAI TTAA 3 cut(s) 135, 477, 822
SatI GCNGC 7 cut(s) 260, 267, 272, 287, 612, 615, 762
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 500, 591, 648
SduI GDGCHC 2 cut(s) 514, 801
SexAI ACCWGGT 1 cut(s) 646
SfaNI GCATC 1 cut(s) 598
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 3 cut(s) 40, 154, 601
SsiI CCGC 6 cut(s) 73, 260, 266, 286, 463, 549
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 2 cut(s) 514, 801
StyD4I CCNGG 3 cut(s) 498, 589, 646
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 321, 386, 598
TaiI ACGT 1 cut(s) 191
TaqI TCGA 3 cut(s) 172, 585, 675
TasI AATT 3 cut(s) 40, 154, 601
TauI GCSGC 3 cut(s) 262, 269, 289
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 3 cut(s) 135, 477, 822
Tru9I TTAA 3 cut(s) 135, 477, 822
TscAI CASTG 3 cut(s) 391, 637, 661
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 4 cut(s) 271, 611, 614, 761
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 576, 756
TspGWI ACGGA 2 cut(s) 121, 321
TspRI CASTG 3 cut(s) 391, 637, 661
Tth111I GACNNNGTC 1 cut(s) 341
Vha464I CTTAAG 1 cut(s) 821
XapI RAATTY 1 cut(s) 601
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.