Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

27097703 .. 27100202

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAATCGTGCTTTGGTCCTACTTTTATATGTTTGTACTGTTTCTTGTTTAGCTTCAAGCAAAGTTATTTTGATGAGGAATAACATCACTCTCTCTTTTGATGACATCGAAGCTAACTTCGCTCCGTCAGTGAAGGGTACAGGTGAAATTGGAGTGGTTTATGTGGCTGAGCCTCTTGACGCTTGTCAAAATCTTATGAATAAACCAGAACAGAGCTCCAATGAAACTTCTCCTTTTGTGTTGATTGTTAGAGGAGGCTGTAGTTTTGAAGAGAAAGTTAGAAAAGCTCAGAGAGCTGGTTTCAAAGCTGCTATTATCTATGACAATGAAGACCGTGGAACATTGATAGCAATGGCAGGTAACTCTGGAGGTATAAGGATTCATGCGGTCTTTGTTACGAAAGAAACGGGAGAAGTTTTAAAGGAGTATGCGGGTTTCCCCGATACGAAAGTTTGGTTGATCCCAAGTTTTGAGAACTCGGCGTGGTCTATTATGGCGGTTTCGTTTATCTCGCTGCTTGCAATGTCGGCTGTTCTCGCTACTTGTTTCTTTGTGCGTAGGCATCGAATAAGAAGGCGGACATCTCGGTCCTCTCGAGTGCGTGAGTTTCACGGTATGAGCCGCCGCTTGGTGAAAGCAATGCCGAGTCTTATATTCAGTTCGTTTCATGAAGATAACACTACTGCATTCACTTGTGCTATTTGCCTTGAAGACTACACTGTTGGAGACAAGCTCAGGCTCTTACCTTGCTGTCACAAGTTTCATGCTGCGTGTGTTGACTCATGGTTAACCTCTTGGAGAACTTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAGCACGGGAGAGCCTCCAGCTTCAGAGAGCACGCCATTGCTCTCATCTGCTGCATCGTCTTTCACTTCTTCCTCTCTGCACTCTTCAGTCAGATCATCTGCACTATTGATTGGTCCTTCCTTGGGCTCATTACCAACTTCAATCTCTTTCTCTCCCGCATACGCAAGCTCATCCTATATTAGACAATCATTCCAGTCTTCCTCTAACCGTCGATCACCTCCAATAAGCGTAAGTCGAAGCTCAGTGGATCTCAGACAACAAGCAGCTTCTCCATCTCCATCACCATCACAGAGATCATACATTTCCCATATGGCTTCTCCACAGTCACTAGGTTACCCAACTATCTCCCCTTTCAACACGAGGTACATGTCACCGTATAGACCTAGCCCGAGCAATGCATCACCTGCAATGGCTGGATCATCGAATTATCCGTTGAATCCACTGCGTTACAGTGAATCAGCTGGAACTTTCTCTCCATACGCCTCTGCAAACTCGCTTCCAGACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

448

Amino Acids

48.81

Weight (kDa)

9.29

Isoelectric Point (pI)

76.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	52 - 140	8.1e-14	PA domain
zf-RING_2	PF13639	231 - 274	2.9e-12	Ring finger domain
zf-RING_11	PF17123	232 - 259	1.8e-10	RING-like zinc finger
zf-C3HC4	PF00097	232 - 273	3.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1249
AasI	GACNNNNNNGTC	1 cut(s)	586
Acc36I	ACCTGC	2 cut(s)	347, 1249
AciI	CCGC	7 cut(s)	386, 431, 497, 577, 622, 625, 993
AclWI	GGATC	3 cut(s)	454, 1092, 1261
AcuI	CTGAAG	2 cut(s)	843, 906
AfaI	GTAC	3 cut(s)	37, 139, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	628, 959
AflIII	ACRYGT	1 cut(s)	1203
AgsI	TTSAA	7 cut(s)	57, 269, 304, 710, 978, 1192, 1273
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	4 cut(s)	793, 825, 1294, 1326
Alw21I	GWGCWC	3 cut(s)	218, 842, 869
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	3 cut(s)	454, 1092, 1261
Ama87I	CYCGRG	2 cut(s)	594, 1225
ApeKI	GCWGC	5 cut(s)	308, 514, 767, 887, 1100
AspS9I	GGNCC	3 cut(s)	16, 588, 950
AsuHPI	GGTGA	6 cut(s)	155, 643, 1044, 1110, 1200, 1230
AvaI	CYCGRG	2 cut(s)	594, 1225
AvaII	GGWCC	3 cut(s)	16, 588, 950
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanII	GRGCYC	2 cut(s)	218, 965
BauI	CACGAG	1 cut(s)	1195
BbsI	GAAGAC	3 cut(s)	336, 717, 1026
Bbv12I	GWGCWC	3 cut(s)	218, 842, 869
BbvI	GCAGC	5 cut(s)	295, 501, 754, 874, 1112
BccI	CCATC	3 cut(s)	1117, 1123, 1129
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	1166, 1221
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	2 cut(s)	347, 1249
BisI	GCNGC	7 cut(s)	309, 515, 622, 625, 768, 888, 1101
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	7 cut(s)	310, 516, 623, 626, 769, 889, 1102
Bme18I	GGWCC	3 cut(s)	16, 588, 950
BmeT110I	CYCGRG	2 cut(s)	594, 1225
BmgT120I	GGNCC	3 cut(s)	16, 588, 950
BmsI	GCATC	4 cut(s)	571, 817, 899, 1244
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	3 cut(s)	336, 717, 1026
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
BpmI	CTGGAG	2 cut(s)	387, 837
Bpu10I	CCTNAGC	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	334, 957
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	1294, 1324
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 959
Bse1I	ACTGG	1 cut(s)	1030
Bse3DI	GCAATG	6 cut(s)	357, 528, 645, 872, 1237, 1251
BseDI	CCNNGG	2 cut(s)	334, 957
BseGI	GGATG	1 cut(s)	1007
BseLI	CCNNNNNNNGG	2 cut(s)	628, 959
BseMI	GCAATG	6 cut(s)	357, 528, 645, 872, 1237, 1251
BseMII	CTCAG	5 cut(s)	159, 302, 748, 1092, 1102
BseNI	ACTGG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	5 cut(s)	295, 501, 754, 874, 1112
BsgI	GTGCAG	2 cut(s)	899, 921
BsiHKAI	GWGCWC	3 cut(s)	218, 842, 869
BsiHKCI	CYCGRG	2 cut(s)	594, 1225
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	2 cut(s)	628, 959
BsmAI	GTCTC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	686
BsoBI	CYCGRG	2 cut(s)	594, 1225
Bsp1286I	GDGCHC	4 cut(s)	218, 842, 869, 965
Bsp143I	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	7 cut(s)	386, 431, 497, 577, 622, 625, 993
BspCNI	CTCAG	5 cut(s)	160, 301, 747, 1091, 1101
BspHI	TCATGA	1 cut(s)	667
BspMI	ACCTGC	2 cut(s)	347, 1249
BspPI	GGATC	3 cut(s)	454, 1092, 1261
BsrDI	GCAATG	6 cut(s)	357, 528, 645, 872, 1237, 1251
BsrI	ACTGG	1 cut(s)	1030
BssECI	CCNNGG	2 cut(s)	334, 957
BssMI	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
BssSI	CACGAG	1 cut(s)	1195
BssT1I	CCWWGG	1 cut(s)	957
Bst2BI	CACGAG	1 cut(s)	1195
Bst4CI	ACNGT	9 cut(s)	40, 335, 614, 721, 1046, 1161, 1212, 1289, 1343
Bst6I	CTCTTC	2 cut(s)	264, 925
BstAPI	GCANNNNNTGC	1 cut(s)	1241
BstC8I	GCNNGC	3 cut(s)	519, 869, 1003
BstDEI	CTNAG	5 cut(s)	168, 288, 734, 1078, 1088
BstDSI	CCRYGG	1 cut(s)	334
BstEII	GGTNACC	1 cut(s)	1169
BstF5I	GGATG	1 cut(s)	1007
BstKTI	GATC	6 cut(s)	462, 932, 1052, 1087, 1133, 1256
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 293, 527, 536, 1241
BstNSI	RCATGY	1 cut(s)	1207
BstPAI	GACNNNNGTC	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	1169
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	5 cut(s)	295, 501, 754, 874, 1112
BstV2I	GAAGAC	3 cut(s)	336, 717, 1026
BstX2I	RGATCY	1 cut(s)	1084
BstYI	RGATCY	1 cut(s)	1084
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	1007
BtsI	GCAGTG	1 cut(s)	1277
BtsIMutI	CAGTG	5 cut(s)	135, 717, 1086, 1277, 1294
BveI	ACCTGC	2 cut(s)	347, 1249
Cac8I	GCNNGC	3 cut(s)	519, 869, 1003
CciI	TCATGA	1 cut(s)	667
Cfr13I	GGNCC	3 cut(s)	16, 588, 950
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	36, 138, 1201
CviAII	CATG	5 cut(s)	383, 668, 764, 783, 1204
CviQI	GTAC	3 cut(s)	36, 138, 1201
DdeI	CTNAG	5 cut(s)	168, 288, 734, 1078, 1088
DpnI	GATC	6 cut(s)	461, 931, 1051, 1086, 1132, 1255
DpnII	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
DraI	TTTAAA	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	586
DseDI	GACNNNNNNGTC	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	264, 925
EarI	CTCTTC	2 cut(s)	264, 925
EciI	GGCGGA	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	957
Eco24I	GRGCYC	2 cut(s)	218, 965
Eco47I	GGWCC	3 cut(s)	16, 588, 950
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	843, 906
Eco88I	CYCGRG	2 cut(s)	594, 1225
Eco91I	GGTNACC	1 cut(s)	1169
EcoICRI	GAGCTC	1 cut(s)	216
EcoO65I	GGTNACC	1 cut(s)	1169
EcoT14I	CCWWGG	1 cut(s)	957
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	2 cut(s)	218, 965
ErhI	CCWWGG	1 cut(s)	957
FaeI	CATG	5 cut(s)	386, 671, 767, 786, 1207
FatI	CATG	5 cut(s)	382, 667, 763, 782, 1203
FauI	CCCGC	2 cut(s)	424, 1000
FauNDI	CATATG	1 cut(s)	1146
Fnu4HI	GCNGC	7 cut(s)	309, 515, 622, 625, 768, 888, 1101
FokI	GGATG	1 cut(s)	994
FriOI	GRGCYC	2 cut(s)	218, 965
Fsp4HI	GCNGC	7 cut(s)	309, 515, 622, 625, 768, 888, 1101
FspBI	CTAG	2 cut(s)	1166, 1221
GluI	GCNGC	7 cut(s)	309, 515, 622, 625, 768, 888, 1101
GsuI	CTGGAG	2 cut(s)	387, 837
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	5 cut(s)	386, 671, 767, 786, 1207
HincII	GTYRAC	2 cut(s)	778, 789
HindII	GTYRAC	2 cut(s)	778, 789
HinfI	GANTC	6 cut(s)	4, 379, 646, 779, 1273, 1292
HpaI	GTTAAC	1 cut(s)	789
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	6 cut(s)	155, 643, 1044, 1110, 1200, 1230
Hpy166II	GTNNAC	2 cut(s)	778, 789
Hpy188I	TCNGA	4 cut(s)	291, 862, 929, 1091
Hpy188III	TCNNGA	5 cut(s)	176, 366, 594, 668, 1337
Hpy8I	GTNNAC	2 cut(s)	778, 789
Hpy99I	CGWCG	1 cut(s)	1050
HpyAV	CCTTC	3 cut(s)	127, 567, 963
HpyCH4III	ACNGT	9 cut(s)	40, 335, 614, 721, 1046, 1161, 1212, 1289, 1343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 293, 527, 536, 1241
HpyF3I	CTNAG	5 cut(s)	168, 288, 734, 1078, 1088
Hsp92II	CATG	5 cut(s)	386, 671, 767, 786, 1207
KspAI	GTTAAC	1 cut(s)	789
Kzo9I	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
LmnI	GCTCC	2 cut(s)	127, 221
Lsp1109I	GCAGC	5 cut(s)	295, 501, 754, 874, 1112
LweI	GCATC	4 cut(s)	571, 817, 899, 1244
MaeI	CTAG	2 cut(s)	1166, 1221
MaeIII	GTNAC	7 cut(s)	359, 394, 752, 1161, 1169, 1206, 1283
MalI	GATC	6 cut(s)	461, 931, 1051, 1086, 1132, 1255
MboI	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
MboII	GAAGA	7 cut(s)	281, 341, 683, 722, 897, 912, 1026
MflI	RGATCY	1 cut(s)	1084
MhlI	GDGCHC	4 cut(s)	218, 842, 869, 965
MluCI	AATT	2 cut(s)	147, 1261
MlyI	GAGTC	2 cut(s)	655, 773
MmeI	TCCRAC	1 cut(s)	703
Mph1103I	ATGCAT	1 cut(s)	1237
MseI	TTAA	2 cut(s)	419, 788
MspA1I	CMGCKG	1 cut(s)	1298
MspI	CCGG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	686
MwoI	GCNNNNNNNGC	5 cut(s)	119, 293, 527, 536, 1241
NdeI	CATATG	1 cut(s)	1146
NdeII	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
NlaIII	CATG	5 cut(s)	386, 671, 767, 786, 1207
NmeAIII	GCCGAG	2 cut(s)	458, 669
NmuCI	GTSAC	3 cut(s)	752, 1161, 1206
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	1 cut(s)	1207
PaeR7I	CTCGAG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	1249
PciI	ACATGT	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	2 cut(s)	592, 1265
PctI	GAATGC	1 cut(s)	686
PfeI	GAWTC	4 cut(s)	4, 379, 1273, 1292
PkrI	GCNGC	7 cut(s)	310, 516, 623, 626, 769, 889, 1102
PleI	GAGTC	2 cut(s)	654, 773
PpsI	GAGTC	2 cut(s)	654, 773
PscI	ACATGT	1 cut(s)	1203
PshAI	GACNNNNGTC	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	1169
PspPI	GGNCC	3 cut(s)	16, 588, 950
PsuI	RGATCY	1 cut(s)	1084
PvuII	CAGCTG	1 cut(s)	1298
RsaI	GTAC	3 cut(s)	37, 139, 1202
RsaNI	GTAC	3 cut(s)	36, 138, 1201
SacI	GAGCTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	419, 788
SatI	GCNGC	7 cut(s)	309, 515, 622, 625, 768, 888, 1101
Sau3AI	GATC	6 cut(s)	459, 929, 1049, 1084, 1130, 1253
Sau96I	GGNCC	3 cut(s)	16, 588, 950
SchI	GAGTC	2 cut(s)	655, 773
SduI	GDGCHC	4 cut(s)	218, 842, 869, 965
SfaNI	GCATC	4 cut(s)	571, 817, 899, 1244
SfcI	CTRYAG	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	594
SinI	GGWCC	3 cut(s)	16, 588, 950
SlaI	CTCGAG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	2 cut(s)	147, 1261
SsiI	CCGC	7 cut(s)	386, 431, 497, 577, 622, 625, 993
SspMI	CTAG	2 cut(s)	1166, 1221
SstI	GAGCTC	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	9 cut(s)	40, 335, 614, 721, 1046, 1161, 1212, 1289, 1343
TaqI	TCGA	6 cut(s)	108, 565, 595, 1048, 1072, 1259
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	2 cut(s)	147, 1261
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	2 cut(s)	624, 627
TfiI	GAWTC	4 cut(s)	4, 379, 1273, 1292
Tru1I	TTAA	2 cut(s)	419, 788
Tru9I	TTAA	2 cut(s)	419, 788
TscAI	CASTG	5 cut(s)	135, 724, 1086, 1284, 1294
TseFI	GTSAC	3 cut(s)	752, 1161, 1206
TseI	GCWGC	5 cut(s)	308, 514, 767, 887, 1100
Tsp45I	GTSAC	3 cut(s)	752, 1161, 1206
TspDTI	ATGAA	8 cut(s)	17, 212, 237, 342, 371, 656, 684, 752
TspGWI	ACGGA	2 cut(s)	114, 1257
TspRI	CASTG	5 cut(s)	135, 724, 1086, 1284, 1294
VpaK11BI	GGWCC	3 cut(s)	16, 588, 950
XceI	RCATGY	1 cut(s)	1207
XhoI	CTCGAG	1 cut(s)	594
XspI	CTAG	2 cut(s)	1166, 1221
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.