Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004322.1

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

58676 .. 64497

Gene Structure 5822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004322.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgaatctggtcgtggttttggtggcgcttgtcgttggcaagttttgcatggcggatgccaatgtggtcttgattgggagcaacgtcaccctctctttcgaggacgttgaagctaattttgctccggcagttaggggttctgggcagtgtggagtgttgtatttggctgagccgattgatgcatgctcgacattgactaataaagccggaccgggcgcgaattatagctccccttttgtgttgattagaagaggagggggttgcagttttgaggagaaagttagaagagctcaagatgctgggttcaaagctgcaattgtctatgacaatgaagacgacggcgtcttggtttcaatggcaggaagttcagctggtataaaaatacatgcagtttttgtttcaaaagcttctggtgaaattctcaaaatgtacgctggactcactaacatggaggtgtggctaattgccagctttgagaactcagcatggtcaatcatggcaatctccttcatttccttgctcgccatgtctgcagtattggctacttgctttttcgttcgcagacatcgcataagacgagaaaggcctcaagcttctcgggtccgagaatttcatgggatgagcagtagattagtaaaagcaatgccaagtttgatatttactgccgttttagaggacaactgcacttcagtaacatgtgcaatatgccttgaggactacagtgttggagagaaacttaggattctgccttgttgtcacaagtttcatgctgtctgtgtggactcttggcttacttcatggagaaccttttgcccagtttgcaagcgtgatgcaagagccaacatgagtgatctaccagcttcagaatcgacaccattgctttcacccggcccatcctctgtggcctcctctgtactgtcatctaggagatcatcactggcatcatcttcagccattcagatagtaccagaatcatcaaggtctccttatgtttctcatcctcactctctttctagcacatacatccagcagtctcttaggtcctccttccgccagtccccttctatgagtgtaagccgaagctcagtagacctgcggaattcctcatcccaaaggtctcatgcttcctattttatttccccccactcctcgtactacccatctttatcaccactgaactcgagatatctgactgtacccattccaagcgcaagcaatgcttcaccaagtttcttgagttcttccagtcatcaacagcatccactacactgtagtgagtcagcagcaaccttttctccttttgcttctgctcattctcttcctgaatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

443

Amino Acids

47.75

Weight (kDa)

8.7

Isoelectric Point (pI)

72.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	1101
AccI	GTMKAC	1 cut(s)	1089
AccII	CGCG	1 cut(s)	218
AciI	CCGC	3 cut(s)	53, 1051, 1096
AcsI	RAATTY	3 cut(s)	417, 608, 1099
AcuI	CTGAAG	3 cut(s)	672, 846, 933
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	5 cut(s)	431, 915, 966, 1154, 1197
AflIII	ACRYGT	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	110, 307, 354, 402
AleI	CACNNNNGTG	1 cut(s)	1272
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	3 cut(s)	987, 1038, 1122
Ama87I	CYCGRG	2 cut(s)	597, 1180
AoxI	GGCC	3 cut(s)	584, 889, 903
ApeKI	GCWGC	2 cut(s)	311, 1283
ApoI	RAATTY	3 cut(s)	417, 608, 1099
AspLEI	GCGC	3 cut(s)	28, 218, 1211
AspS9I	GGNCC	4 cut(s)	209, 601, 890, 1041
AsuC2I	CCSGG	2 cut(s)	213, 888
AsuHPI	GGTGA	5 cut(s)	79, 425, 876, 1161, 1215
AvaI	CYCGRG	2 cut(s)	597, 1180
AvaII	GGWCC	3 cut(s)	209, 601, 1041
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	298, 1295
BccI	CCATC	2 cut(s)	901, 1168
BceAI	ACGGC	2 cut(s)	355, 650
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BcnI	CCSGG	2 cut(s)	213, 888
BcoDI	GTCTC	3 cut(s)	987, 1038, 1122
BfaI	CTAG	2 cut(s)	924, 1014
BfmI	CTRYAG	3 cut(s)	531, 718, 1270
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	1101
BisI	GCNGC	2 cut(s)	312, 1284
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	313, 1285
Bme1390I	CCNGG	2 cut(s)	213, 888
Bme18I	GGWCC	3 cut(s)	209, 601, 1041
BmeT110I	CYCGRG	2 cut(s)	597, 1180
BmgT120I	GGNCC	4 cut(s)	209, 601, 890, 1041
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	213, 888
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	6 cut(s)	46, 169, 286, 820, 950, 1267
BmuI	ACTGGG	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	4 cut(s)	276, 573, 731, 1255
BpuMI	CCSGG	2 cut(s)	213, 888
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	2 cut(s)	987, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	1279, 1309
Bse1I	ACTGG	4 cut(s)	815, 942, 1054, 1245
Bse3DI	GCAATG	3 cut(s)	648, 875, 1222
BseGI	GGATG	7 cut(s)	61, 624, 893, 997, 1023, 1106, 1258
BseMI	GCAATG	3 cut(s)	648, 875, 1222
BseMII	CTCAG	3 cut(s)	159, 495, 1098
BseNI	ACTGG	4 cut(s)	815, 942, 1054, 1245
BseRI	GAGGAG	4 cut(s)	267, 287, 898, 1138
BseXI	GCAGC	2 cut(s)	298, 1295
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	586, 891, 905
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	597, 1180
BsiSI	CCGG	4 cut(s)	125, 207, 212, 888
BslFI	GGGAC	1 cut(s)	1042
BsmAI	GTCTC	3 cut(s)	987, 1038, 1122
BsmFI	GGGAC	1 cut(s)	1042
BsmI	GAATGC	1 cut(s)	1331
BsnI	GGCC	3 cut(s)	586, 891, 905
Bso31I	GGTCTC	2 cut(s)	987, 1122
BsoBI	CYCGRG	2 cut(s)	597, 1180
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	850, 929
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	53, 1051, 1096
BspANI	GGCC	3 cut(s)	586, 891, 905
BspCNI	CTCAG	3 cut(s)	160, 494, 1097
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	1101
BspQI	GCTCTTC	1 cut(s)	280
BspTNI	GGTCTC	2 cut(s)	987, 1122
BsrDI	GCAATG	3 cut(s)	648, 875, 1222
BsrI	ACTGG	4 cut(s)	815, 942, 1054, 1245
BssMI	GATC	2 cut(s)	850, 929
BssNI	GRCGYC	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	722, 918, 1195, 1271
Bst6I	CTCTTC	3 cut(s)	244, 280, 1323
BstACI	GRCGYC	1 cut(s)	342
BstAPI	GCANNNNNTGC	2 cut(s)	45, 1217
BstC8I	GCNNGC	5 cut(s)	184, 469, 522, 824, 1213
BstDEI	CTNAG	5 cut(s)	168, 481, 737, 1037, 1084
BstF5I	GGATG	7 cut(s)	61, 624, 893, 997, 1023, 1106, 1258
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 218, 1211
BstKTI	GATC	2 cut(s)	853, 932
BstMAI	GTCTC	3 cut(s)	987, 1038, 1122
BstMBI	GATC	2 cut(s)	850, 929
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 119, 296, 530, 539, 567, 819, 1217
BstNSI	RCATGY	3 cut(s)	186, 389, 699
BstSCI	CCNGG	2 cut(s)	211, 886
BstSFI	CTRYAG	3 cut(s)	531, 718, 1270
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	298, 1295
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	586, 891, 905
BtgZI	GCGATG	1 cut(s)	551
BtsCI	GGATG	7 cut(s)	61, 624, 893, 997, 1023, 1106, 1258
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	5 cut(s)	152, 727, 935, 1172, 1267
BveI	ACCTGC	1 cut(s)	1101
Cac8I	GCNNGC	5 cut(s)	184, 469, 522, 824, 1213
CfoI	GCGC	3 cut(s)	28, 218, 1211
Cfr13I	GGNCC	4 cut(s)	209, 601, 890, 1041
CpoI	CGGWCCG	1 cut(s)	209
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	5 cut(s)	430, 914, 965, 1153, 1196
CspI	CGGWCCG	1 cut(s)	209
CviQI	GTAC	5 cut(s)	430, 914, 965, 1153, 1196
DdeI	CTNAG	5 cut(s)	168, 481, 737, 1037, 1084
DpnI	GATC	2 cut(s)	852, 931
DpnII	GATC	2 cut(s)	850, 929
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	244, 280, 1323
EarI	CTCTTC	3 cut(s)	244, 280, 1323
EciI	GGCGGA	2 cut(s)	68, 1040
Ecl136II	GAGCTC	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	987, 1122
Eco32I	GATATC	1 cut(s)	1187
Eco47I	GGWCC	3 cut(s)	209, 601, 1041
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	3 cut(s)	672, 846, 933
Eco88I	CYCGRG	2 cut(s)	597, 1180
EcoICRI	GAGCTC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	1041
EcoRI	GAATTC	1 cut(s)	1099
EcoRV	GATATC	1 cut(s)	1187
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	292
FalI	AAGNNNNNCTT	4 cut(s)	970, 1002, 1204, 1236
FaqI	GGGAC	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	2 cut(s)	312, 1284
FokI	GGATG	7 cut(s)	68, 631, 880, 984, 1010, 1093, 1245
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	312, 1284
FspBI	CTAG	2 cut(s)	924, 1014
GlaI	GCGC	3 cut(s)	27, 217, 1210
GluI	GCNGC	2 cut(s)	312, 1284
GsaI	CCCAGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	586, 891, 905
HapII	CCGG	4 cut(s)	125, 207, 212, 888
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	3 cut(s)	28, 218, 1211
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	3 cut(s)	26, 216, 1209
HinP1I	GCGC	3 cut(s)	26, 216, 1209
HindIII	AAGCTT	2 cut(s)	405, 591
HinfI	GANTC	7 cut(s)	4, 438, 742, 782, 866, 971, 1277
HpaII	CCGG	4 cut(s)	125, 207, 212, 888
HphI	GGTGA	5 cut(s)	79, 425, 876, 1161, 1215
Hpy166II	GTNNAC	2 cut(s)	781, 1090
Hpy188I	TCNGA	4 cut(s)	605, 865, 960, 1191
Hpy188III	TCNNGA	5 cut(s)	70, 293, 1182, 1234, 1322
Hpy8I	GTNNAC	2 cut(s)	781, 1090
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	517, 1057, 1071
HpyCH4III	ACNGT	4 cut(s)	722, 918, 1195, 1271
HpyCH4IV	ACGT	2 cut(s)	84, 105
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 119, 296, 530, 539, 567, 819, 1217
HpyF3I	CTNAG	5 cut(s)	168, 481, 737, 1037, 1084
HpySE526I	ACGT	2 cut(s)	84, 105
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	3 cut(s)	26, 216, 1209
Kzo9I	GATC	2 cut(s)	850, 929
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	78, 127, 233
Lsp1109I	GCAGC	2 cut(s)	298, 1295
LweI	GCATC	6 cut(s)	46, 169, 286, 820, 950, 1267
MaeI	CTAG	2 cut(s)	924, 1014
MaeII	ACGT	2 cut(s)	84, 105
MaeIII	GTNAC	3 cut(s)	85, 691, 755
MalI	GATC	2 cut(s)	852, 931
MboI	GATC	2 cut(s)	850, 929
MboII	GAAGA	6 cut(s)	261, 297, 344, 939, 1233, 1310
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	7 cut(s)	115, 220, 315, 417, 462, 608, 1099
MlyI	GAGTC	3 cut(s)	432, 776, 1286
MmeI	TCCRAC	1 cut(s)	706
Mph1103I	ATGCAT	1 cut(s)	184
MslI	CAYNNNNRTG	3 cut(s)	446, 452, 1272
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	125, 207, 212, 888
MspR9I	CCNGG	2 cut(s)	213, 888
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	1331
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	8 cut(s)	45, 119, 296, 530, 539, 567, 819, 1217
NciI	CCSGG	2 cut(s)	213, 888
NdeII	GATC	2 cut(s)	850, 929
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	2 cut(s)	85, 755
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	3 cut(s)	186, 389, 699
OliI	CACNNNNGTG	1 cut(s)	1272
PaeI	GCATGC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	1180
PceI	AGGCCT	1 cut(s)	586
PciI	ACATGT	1 cut(s)	695
PciSI	GCTCTTC	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PctI	GAATGC	1 cut(s)	1331
PfeI	GAWTC	4 cut(s)	4, 742, 866, 971
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	313, 1285
PleI	GAGTC	3 cut(s)	432, 776, 1285
PpsI	GAGTC	3 cut(s)	432, 776, 1285
PpuMI	RGGWCCY	1 cut(s)	1041
PscI	ACATGT	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	1041
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	4 cut(s)	209, 601, 890, 1041
PspPPI	RGGWCCY	1 cut(s)	1041
PstI	CTGCAG	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	5 cut(s)	431, 915, 966, 1154, 1197
RsaNI	GTAC	5 cut(s)	430, 914, 965, 1153, 1196
RseI	CAYNNNNRTG	3 cut(s)	446, 452, 1272
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	312, 1284
Sau3AI	GATC	2 cut(s)	850, 929
Sau96I	GGNCC	4 cut(s)	209, 601, 890, 1041
SchI	GAGTC	3 cut(s)	432, 776, 1286
ScrFI	CCNGG	2 cut(s)	213, 888
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	6 cut(s)	46, 169, 286, 820, 950, 1267
SfcI	CTRYAG	3 cut(s)	531, 718, 1270
Sfr274I	CTCGAG	1 cut(s)	1180
SinI	GGWCC	3 cut(s)	209, 601, 1041
SlaI	CTCGAG	1 cut(s)	1180
SmiMI	CAYNNNNRTG	3 cut(s)	446, 452, 1272
SmlI	CTYRAG	5 cut(s)	291, 588, 710, 1180, 1234
SmoI	CTYRAG	5 cut(s)	291, 588, 710, 1180, 1234
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	7 cut(s)	115, 220, 315, 417, 462, 608, 1099
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	3 cut(s)	53, 1051, 1096
SspMI	CTAG	2 cut(s)	924, 1014
SstI	GAGCTC	1 cut(s)	292
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	211, 886
TaaI	ACNGT	4 cut(s)	722, 918, 1195, 1271
TaiI	ACGT	2 cut(s)	87, 108
TaqI	TCGA	4 cut(s)	99, 188, 869, 1181
TasI	AATT	7 cut(s)	115, 220, 315, 417, 462, 608, 1099
TatI	WGTACW	1 cut(s)	913
TfiI	GAWTC	4 cut(s)	4, 742, 866, 971
TscAI	CASTG	5 cut(s)	152, 727, 942, 1179, 1274
TseFI	GTSAC	2 cut(s)	85, 755
TseI	GCWGC	2 cut(s)	311, 1283
Tsp45I	GTSAC	2 cut(s)	85, 755
TspDTI	ATGAA	6 cut(s)	17, 345, 499, 602, 755, 786
TspRI	CASTG	5 cut(s)	152, 727, 942, 1179, 1274
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	209, 601, 1041
XapI	RAATTY	3 cut(s)	417, 608, 1099
XceI	RCATGY	3 cut(s)	186, 389, 699
XhoI	CTCGAG	1 cut(s)	1180
XmiI	GTMKAC	1 cut(s)	1089
XspI	CTAG	2 cut(s)	924, 1014
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.