Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Reverse (-)

21684455 .. 21687096

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTCTACCGGAAACCCACGCTCCGCCGCCGAATCACTTGGCCGACCGTTCGCCACTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCCGTGGAAGTGAACGACCGAACGAGTAGCGACTCTGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTCGTACACGAGTTCTTCGTCCCAGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCAATCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGTGAAGTCTGGAAAACTTAACCAGCCTCAGGCACTAGGGATATCTGCTGAATTGAAATCAAAGGGATATGCACTTCTCTGTGTGGGTTTTCCATCATCTGATCTTGAAGTAGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCAATTGAAAGAGATGATTATGCATTGGAGTTGGCATTGGGTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

187

Amino Acids

21.25

Weight (kDa)

6.38

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	77 - 144	4.4e-14	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	1 cut(s)	222
AciI	CCGC	4 cut(s)	58, 61, 112, 222
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	3 cut(s)	109, 122, 225
AfaI	GTAC	4 cut(s)	231, 260, 325, 339
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	397, 449, 488, 521
AhlI	ACTAGT	1 cut(s)	326
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	4, 512
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	4, 512
AxyI	CCTNAGG	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	442
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	2 cut(s)	327, 377
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	3 cut(s)	61, 112, 223
BlsI	GCNGC	3 cut(s)	62, 113, 224
Bme18I	GGWCC	2 cut(s)	4, 512
BmgT120I	GGNCC	2 cut(s)	4, 512
BmiI	GGNNCC	2 cut(s)	110, 513
Bpu10I	CCTNAGC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	341
BsaHI	GRCGYC	3 cut(s)	109, 122, 225
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	267, 383
BseNI	ACTGG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	2 cut(s)	81, 160
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	108
BsiEI	CGRYCG	2 cut(s)	81, 160
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	43, 310
BslFI	GGGAC	2 cut(s)	170, 230
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	170, 230
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	253, 442
BspACI	CCGC	4 cut(s)	58, 61, 112, 222
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	268, 382
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	110, 513
BspPI	GGATC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	253, 442
BssNAI	GTATAC	1 cut(s)	478
BssNI	GRCGYC	3 cut(s)	109, 122, 225
BssSI	CACGAG	1 cut(s)	233
Bst1107I	GTATAC	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	82, 205, 317
BstACI	GRCGYC	3 cut(s)	109, 122, 225
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	307, 311
BstDEI	CTNAG	2 cut(s)	276, 369
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	256, 445
BstMBI	GATC	2 cut(s)	253, 442
BstMCI	CGRYCG	2 cut(s)	81, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 139
BstUI	CGCG	1 cut(s)	222
BstZ17I	GTATAC	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	307, 311
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	4, 512
CseI	GACGC	2 cut(s)	199, 214
Csp6I	GTAC	4 cut(s)	230, 259, 324, 338
CviJI	RGCY	4 cut(s)	76, 133, 367, 484
CviKI_1	RGCY	4 cut(s)	76, 133, 367, 484
CviQI	GTAC	4 cut(s)	230, 259, 324, 338
DdeI	CTNAG	2 cut(s)	276, 369
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	2 cut(s)	255, 444
DpnII	GATC	2 cut(s)	253, 442
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	4, 512
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
FaiI	YATR	4 cut(s)	263, 411, 478, 534
FaqI	GGGAC	2 cut(s)	170, 230
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	61, 112, 223
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	61, 112, 223
FspBI	CTAG	2 cut(s)	327, 377
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	61, 112, 223
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	43, 310
HgaI	GACGC	2 cut(s)	199, 214
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	3 cut(s)	109, 122, 225
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	66, 173
HpaII	CCGG	2 cut(s)	43, 310
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	4 cut(s)	154, 208, 232, 478
Hpy188I	TCNGA	2 cut(s)	130, 442
Hpy188III	TCNNGA	4 cut(s)	187, 351, 446, 493
Hpy8I	GTNNAC	4 cut(s)	154, 208, 232, 478
Hpy99I	CGWCG	5 cut(s)	124, 127, 130, 193, 230
HpyCH4III	ACNGT	3 cut(s)	82, 205, 317
HpyCH4IV	ACGT	2 cut(s)	122, 340
HpyCH4V	TGCA	6 cut(s)	21, 30, 268, 413, 506, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 139
HpyF3I	CTNAG	2 cut(s)	276, 369
HpySE526I	ACGT	2 cut(s)	122, 340
Hsp92I	GRCGYC	3 cut(s)	109, 122, 225
HspAI	GCGC	1 cut(s)	109
KasI	GGCGCC	1 cut(s)	108
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	253, 442
LmnI	GCTCC	3 cut(s)	60, 130, 138
LpnPI	CCDG	9 cut(s)	31, 40, 56, 261, 323, 336, 356, 377, 466
MaeI	CTAG	2 cut(s)	327, 377
MaeII	ACGT	2 cut(s)	122, 340
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	255, 444
MboI	GATC	2 cut(s)	253, 442
MboII	GAAGA	2 cut(s)	232, 287
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	392, 488, 516
Mly113I	GGCGCC	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	45, 244, 271, 378, 460, 466
Mph1103I	ATGCAT	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	309
MseI	TTAA	1 cut(s)	360
MspI	CCGG	2 cut(s)	43, 310
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	27, 139
NaeI	GCCGGC	1 cut(s)	311
NarI	GGCGCC	1 cut(s)	109
NdeII	GATC	2 cut(s)	253, 442
NgoMIV	GCCGGC	1 cut(s)	309
NlaIV	GGNNCC	2 cut(s)	110, 513
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	30
PdiI	GCCGGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	62, 113, 224
PleI	GAGTC	1 cut(s)	167
PluTI	GGCGCC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	110, 513
PspPI	GGNCC	2 cut(s)	4, 512
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	4 cut(s)	231, 260, 325, 339
RsaNI	GTAC	4 cut(s)	230, 259, 324, 338
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	61, 112, 223
Sau3AI	GATC	2 cut(s)	253, 442
Sau96I	GGNCC	2 cut(s)	4, 512
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	4 cut(s)	125, 135, 343, 477
SfoI	GGCGCC	1 cut(s)	110
SinI	GGWCC	2 cut(s)	4, 512
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	3 cut(s)	392, 488, 516
SsiI	CCGC	4 cut(s)	58, 61, 112, 222
SspDI	GGCGCC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	327, 377
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	82, 205, 317
TaiI	ACGT	2 cut(s)	125, 343
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	392, 488, 516
TatI	WGTACW	2 cut(s)	258, 323
TauI	GCSGC	3 cut(s)	63, 114, 225
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	4, 512
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	2 cut(s)	327, 377
ZraI	GACGTC	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.