Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Reverse (-)

21696415 .. 21697645

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0236500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTACCAGAAGTCCTCCATTTTCGTTATGTTTCTGACCTTGCTTGCCTTGGCTACCACCTTCCCCAGCTCGGTGCAAAGCCAAAGCACCCGAGTTGGATTCTATTCCAGTTCATGTCCTAAGGCAGAGTCCATTGTCACACAAACAGTTCAGAAGCATTTCACATCCACTCCTTCCATTGCTCCTGGCTTATTGAGGATGCACTTTCATGACTGCTTTGTCCAAGGTTGTGACGCTTCTGTCCTCCTCAACGGCGCAAACACTGAAAAAACCGCTGGCCCAAACCTCGGATTGAGAGGTTGGGAAGTCATTGACGATGCAAAGACTCAGCTTGAAGCCGCATGCCCTGGTGTTGTTTCCTGTGCAGACATTCTCGCCTTAGCAGCTCGCGATTCTGTCGTCTTGACAAAGGGAATTAACTGGGACGTGCCTACCGGAAGGTTAGACGGACGAGTATCATTGGCATCTGAGGCTAAAAATATGCCTGGCCCTAGGGATTCTATTGACGTACAAAAGACCAAGTTTCAAATTTTTGGTCTCAACACTCAAGATCTTGTCACGCTTGTTGGTGGACACACTATTGGCACTTCAGCTTGCCAGTTCTTCAAGTACAGGCTTTACAACTTCACTACAACTGGAAACGGCGCAGATCCTACCATCAACCCTTCATTTCTTCCTCAACTACGAACACTTTGCCCCCAAGATGGTGATGCAGCAAAGCGTGTCGATTTGGACACAGGCAGTGCAGCTTTATTTGATGCAACATTCTTCAAAAACTTAGAAAATGGTCGCGGGATACTTGAGTCTGATCAAAAATTATGGACTGATGCCTCCACAAAAAGCTTTGTTCAACAGTTCTTGGGTGTGAGAGGCTTGCAGGCATTGAACTTCAACATAGAGTTCGGAAGGTCCATGGTGAAGATGAGTAATATCGGTTTGAAGTCTGCAGCAAATGGTGAAATCCGCCGCATTTGTTCTGCCATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

329

Amino Acids

35.55

Weight (kDa)

8.39

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 286	1.8e-83	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 239
AccII	CGCG	2 cut(s)	390, 792
AciI	CCGC	5 cut(s)	273, 339, 792, 964, 967
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	3 cut(s)	5, 510, 611
AfiI	CCNNNNNNNGG	3 cut(s)	70, 287, 704
AgsI	TTSAA	8 cut(s)	335, 527, 607, 772, 851, 886, 892, 940
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	184, 346, 484
AluBI	AGCT	6 cut(s)	69, 331, 386, 593, 749, 843
AluI	AGCT	6 cut(s)	69, 331, 386, 593, 749, 843
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	277, 487
ApeKI	GCWGC	4 cut(s)	383, 713, 746, 947
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
Asp700I	GAANNNNTTC	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	257, 647
AspS9I	GGNCC	3 cut(s)	278, 488, 909
AsuHPI	GGTGA	3 cut(s)	719, 928, 968
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	909
AvrII	CCTAGG	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	120
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BbvI	GCAGC	4 cut(s)	395, 725, 758, 959
BccI	CCATC	2 cut(s)	665, 698
BceAI	ACGGC	2 cut(s)	268, 658
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	3 cut(s)	186, 348, 486
BciVI	GTATCC	1 cut(s)	789
BclI	TGATCA	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	789
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	6 cut(s)	339, 384, 714, 747, 948, 967
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	6 cut(s)	340, 385, 715, 748, 949, 968
Bme1390I	CCNGG	3 cut(s)	186, 348, 486
Bme18I	GGWCC	1 cut(s)	909
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	278, 488, 909
BmrFI	CCNGG	3 cut(s)	186, 348, 486
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	6 cut(s)	189, 307, 473, 700, 748, 817
BmuI	ACTGGG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	379
BpuEI	CTTGAG	2 cut(s)	531, 821
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	6 cut(s)	48, 223, 286, 346, 491, 912
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 287, 704
Bse1I	ACTGG	4 cut(s)	108, 425, 598, 640
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	186, 348, 486
BseDI	CCNNGG	6 cut(s)	48, 223, 286, 346, 491, 912
BseGI	GGATG	2 cut(s)	164, 204
BseLI	CCNNNNNNNGG	3 cut(s)	70, 287, 704
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	341, 459
BseNI	ACTGG	4 cut(s)	108, 425, 598, 640
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	395, 725, 758, 959
BseYI	CCCAGC	1 cut(s)	65
BsgI	GTGCAG	2 cut(s)	384, 765
Bsh1236I	CGCG	2 cut(s)	390, 792
BshFI	GGCC	2 cut(s)	279, 489
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	70, 287, 704
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	279, 489
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	550, 649, 808
Bsp19I	CCATGG	1 cut(s)	912
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	5 cut(s)	273, 339, 792, 964, 967
BspANI	GGCC	2 cut(s)	279, 489
BspCNI	CTCAG	2 cut(s)	340, 460
BspFNI	CGCG	2 cut(s)	390, 792
BspHI	TCATGA	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	4 cut(s)	108, 425, 598, 640
BssECI	CCNNGG	6 cut(s)	48, 223, 286, 346, 491, 912
BssMI	GATC	3 cut(s)	550, 649, 808
BssT1I	CCWWGG	4 cut(s)	48, 223, 491, 912
Bst2UI	CCWGG	3 cut(s)	186, 348, 486
Bst4CI	ACNGT	2 cut(s)	148, 855
BstC8I	GCNNGC	7 cut(s)	45, 277, 343, 388, 595, 875, 879
BstDEI	CTNAG	5 cut(s)	120, 327, 379, 468, 778
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	2 cut(s)	164, 204
BstFNI	CGCG	2 cut(s)	390, 792
BstHHI	GCGC	2 cut(s)	257, 647
BstKTI	GATC	3 cut(s)	553, 652, 811
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	3 cut(s)	550, 649, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 470
BstNI	CCWGG	3 cut(s)	186, 348, 486
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	184, 346, 484
BstSFI	CTRYAG	1 cut(s)	945
BstUI	CGCG	2 cut(s)	390, 792
BstV1I	GCAGC	4 cut(s)	395, 725, 758, 959
BstX2I	RGATCY	2 cut(s)	550, 649
BstYI	RGATCY	2 cut(s)	550, 649
Bsu36I	CCTNAGG	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	789
BsuRI	GGCC	2 cut(s)	279, 489
BtgI	CCRYGG	1 cut(s)	912
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	164, 204
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	261, 748
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	7 cut(s)	45, 277, 343, 388, 595, 875, 879
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	257, 647
Cfr13I	GGNCC	3 cut(s)	278, 488, 909
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	4, 509, 610
CviAII	CATG	4 cut(s)	114, 209, 342, 913
CviQI	GTAC	3 cut(s)	4, 509, 610
DdeI	CTNAG	5 cut(s)	120, 327, 379, 468, 778
DpnI	GATC	3 cut(s)	552, 651, 810
DpnII	GATC	3 cut(s)	550, 649, 808
DrdI	GACNNNNNNGTC	2 cut(s)	218, 239
DseDI	GACNNNNNNGTC	2 cut(s)	218, 239
EciI	GGCGGA	1 cut(s)	953
Eco130I	CCWWGG	4 cut(s)	48, 223, 491, 912
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	909
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	3 cut(s)	184, 346, 484
EcoT14I	CCWWGG	4 cut(s)	48, 223, 491, 912
ErhI	CCWWGG	4 cut(s)	48, 223, 491, 912
FaeI	CATG	4 cut(s)	117, 212, 345, 916
FaiI	YATR	8 cut(s)	29, 115, 210, 343, 482, 820, 896, 914
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	113, 208, 341, 912
FauI	CCCGC	1 cut(s)	785
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	6 cut(s)	339, 384, 714, 747, 948, 967
FokI	GGATG	2 cut(s)	151, 211
Fsp4HI	GCNGC	6 cut(s)	339, 384, 714, 747, 948, 967
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	2 cut(s)	256, 646
GluI	GCNGC	6 cut(s)	339, 384, 714, 747, 948, 967
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	279, 489
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	2 cut(s)	257, 647
Hin1II	CATG	4 cut(s)	117, 212, 345, 916
Hin6I	GCGC	2 cut(s)	255, 645
HinP1I	GCGC	2 cut(s)	255, 645
HindIII	AAGCTT	1 cut(s)	841
HinfI	GANTC	6 cut(s)	99, 128, 325, 392, 497, 803
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	3 cut(s)	719, 928, 968
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	6 cut(s)	36, 153, 290, 469, 808, 905
Hpy188III	TCNNGA	4 cut(s)	209, 389, 403, 548
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	5 cut(s)	70, 183, 432, 675, 900
HpyCH4III	ACNGT	2 cut(s)	148, 855
HpyCH4IV	ACGT	2 cut(s)	426, 507
HpyCH4V	TGCA	9 cut(s)	76, 202, 320, 365, 713, 746, 761, 877, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 470
HpyF3I	CTNAG	5 cut(s)	120, 327, 379, 468, 778
HpySE526I	ACGT	2 cut(s)	426, 507
Hsp92II	CATG	4 cut(s)	117, 212, 345, 916
HspAI	GCGC	2 cut(s)	255, 645
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	550, 649, 808
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	395, 725, 758, 959
LweI	GCATC	6 cut(s)	189, 307, 473, 700, 748, 817
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	2 cut(s)	426, 507
MaeIII	GTNAC	3 cut(s)	136, 230, 556
MalI	GATC	3 cut(s)	552, 651, 810
MboI	GATC	3 cut(s)	550, 649, 808
MboII	GAAGA	4 cut(s)	595, 665, 760, 931
MflI	RGATCY	2 cut(s)	550, 649
MluCI	AATT	3 cut(s)	414, 528, 815
MlyI	GAGTC	3 cut(s)	137, 319, 812
MmeI	TCCRAC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	417, 984
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	3 cut(s)	186, 348, 486
MvaI	CCWGG	3 cut(s)	186, 348, 486
MvnI	CGCG	2 cut(s)	390, 792
MwoI	GCNNNNNNNGC	2 cut(s)	383, 470
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	3 cut(s)	550, 649, 808
NlaIII	CATG	4 cut(s)	117, 212, 345, 916
NmuCI	GTSAC	3 cut(s)	136, 230, 556
NruI	TCGCGA	1 cut(s)	390
NspI	RCATGY	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	345
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	99, 392, 497
PkrI	GCNGC	6 cut(s)	340, 385, 715, 748, 949, 968
PleI	GAGTC	3 cut(s)	136, 319, 811
PpsI	GAGTC	3 cut(s)	136, 319, 811
Psp6I	CCWGG	3 cut(s)	184, 346, 484
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	184, 346, 484
PspPI	GGNCC	3 cut(s)	278, 488, 909
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	2 cut(s)	550, 649
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	3 cut(s)	5, 510, 611
RsaNI	GTAC	3 cut(s)	4, 509, 610
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	417, 984
SatI	GCNGC	6 cut(s)	339, 384, 714, 747, 948, 967
Sau3AI	GATC	3 cut(s)	550, 649, 808
Sau96I	GGNCC	3 cut(s)	278, 488, 909
SchI	GAGTC	3 cut(s)	137, 319, 812
ScrFI	CCNGG	3 cut(s)	186, 348, 486
SfaNI	GCATC	6 cut(s)	189, 307, 473, 700, 748, 817
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	546, 800
SmoI	CTYRAG	2 cut(s)	546, 800
SphI	GCATGC	1 cut(s)	345
Sse9I	AATT	3 cut(s)	414, 528, 815
SsiI	CCGC	5 cut(s)	273, 339, 792, 964, 967
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	184, 346, 484
StyI	CCWWGG	4 cut(s)	48, 223, 491, 912
TaaI	ACNGT	2 cut(s)	148, 855
TaiI	ACGT	2 cut(s)	429, 510
TaqI	TCGA	1 cut(s)	726
TasI	AATT	3 cut(s)	414, 528, 815
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	2 cut(s)	341, 969
TfiI	GAWTC	3 cut(s)	99, 392, 497
Tru1I	TTAA	2 cut(s)	417, 984
Tru9I	TTAA	2 cut(s)	417, 984
TscAI	CASTG	2 cut(s)	268, 748
TseFI	GTSAC	3 cut(s)	136, 230, 556
TseI	GCWGC	4 cut(s)	383, 713, 746, 947
Tsp45I	GTSAC	3 cut(s)	136, 230, 556
TspDTI	ATGAA	3 cut(s)	102, 197, 657
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	268, 748
VpaK11BI	GGWCC	1 cut(s)	909
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.