Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

51460861 .. 51467381

Gene Structure 6521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTACACTGGACTCACTAACATGGAGGTGTGGCTAATTGCAAGCTTTGAGAACTCAGCATGGTCAATCATGGCAATCTCCTTCATTTCCTTGCTCGCCATGTCTGCAGTATTGGCTACTTGCTTTTTCGTTCGCAGACATCGCATAAGACGAGAAAGGCCTCAAGCTTCTCGGGTCCGAGAATTTCATGGGATGAGCAGTAGATTAGTAAAAGCAATGCCAAGTTTGATATTTACTGCCGTTTTAGAGGACAACTGCACTTCAGTAACATGTGCAATATGCCTTGAGGACTACAGTGTTGGAGAGAAACTTAGGATTCTGCCTTGTTGTCACAAGTTTCATGCTGTCTGTGTGGACTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAGCCAACATGAGTGATCTACCAGCTTCAGAATCGACACCATTGCTTTCACCCGGCCCATCCTCTGTGGCCTCCTCTGTACTGTCATCTAGGAGATCATCACTAGCATCATCTTCAGCCATTCAGATAGTACCAGAATCATCAAGGTCTCCTTATGTTTCTCATCCTCACTCTCTTTCTAGCACATACATCCAGCAGTCTCTTAGGTCCTCCTTCCGCCAGTCCCCTTCTATGAGTGTAAGCCGAAGCTCAATAGACCTGCGGAATTCCTCATCCCAAAGGTCTCATGCTTCCTATTTTATTTCTCCCCACTCCTCGTACTACCCATCTTTATCACCACTGAACTCGAGATATCTGACTGTACCCATTCCAAGCGCAAGCAATGCTTCACCAAGTTTCTTGAGTTCTTCCAGTCATCAACAGCATCCACTACATTGTAGTGAGTCAGCAGCAACCTTTTCTCCTTTTGCTTCTGCTCATTCTCTTCCTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

301

Amino Acids

33.1

Weight (kDa)

9.16

Isoelectric Point (pI)

86.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	90 - 133	2.8e-12	Ring finger domain
zf-RING_11	PF17123	91 - 118	1.5e-09	RING-like zinc finger
zf-C3HC4	PF00097	91 - 132	2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AciI	CCGC	2 cut(s)	625, 670
AcsI	RAATTY	2 cut(s)	182, 673
AcuI	CTGAAG	3 cut(s)	246, 420, 507
AfaI	GTAC	5 cut(s)	5, 489, 540, 728, 771
AflIII	ACRYGT	1 cut(s)	269
AluBI	AGCT	4 cut(s)	45, 167, 434, 657
AluI	AGCT	4 cut(s)	45, 167, 434, 657
Alw26I	GTCTC	3 cut(s)	561, 612, 696
Ama87I	CYCGRG	2 cut(s)	171, 754
AoxI	GGCC	3 cut(s)	158, 463, 477
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	2 cut(s)	182, 673
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	3 cut(s)	175, 464, 615
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	450, 735, 789
AvaI	CYCGRG	2 cut(s)	171, 754
AvaII	GGWCC	2 cut(s)	175, 615
BbvI	GCAGC	1 cut(s)	869
BccI	CCATC	2 cut(s)	475, 742
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	561, 612, 696
BfaI	CTAG	3 cut(s)	498, 512, 588
BfmI	CTRYAG	2 cut(s)	105, 292
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	1 cut(s)	858
BlsI	GCNGC	1 cut(s)	859
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	2 cut(s)	175, 615
BmeT110I	CYCGRG	2 cut(s)	171, 754
BmgT120I	GGNCC	3 cut(s)	175, 464, 615
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	394, 524, 841
BmuI	ACTGGG	1 cut(s)	383
BpuEI	CTTGAG	3 cut(s)	147, 305, 829
BpuMI	CCSGG	1 cut(s)	462
BsaI	GGTCTC	2 cut(s)	561, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bse1I	ACTGG	4 cut(s)	13, 389, 628, 819
Bse3DI	GCAATG	3 cut(s)	222, 449, 796
BseGI	GGATG	6 cut(s)	198, 467, 571, 597, 680, 832
BseMI	GCAATG	3 cut(s)	222, 449, 796
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	4 cut(s)	13, 389, 628, 819
BseRI	GAGGAG	2 cut(s)	472, 712
BseXI	GCAGC	1 cut(s)	869
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	160, 465, 479
BsiHKCI	CYCGRG	2 cut(s)	171, 754
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	616
BsmAI	GTCTC	3 cut(s)	561, 612, 696
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	3 cut(s)	160, 465, 479
Bso31I	GGTCTC	2 cut(s)	561, 696
BsoBI	CYCGRG	2 cut(s)	171, 754
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	424, 503
BspACI	CCGC	2 cut(s)	625, 670
BspANI	GGCC	3 cut(s)	160, 465, 479
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	675
BspTNI	GGTCTC	2 cut(s)	561, 696
BsrDI	GCAATG	3 cut(s)	222, 449, 796
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	4 cut(s)	13, 389, 628, 819
BssMI	GATC	2 cut(s)	424, 503
Bst4CI	ACNGT	3 cut(s)	296, 492, 769
Bst6I	CTCTTC	1 cut(s)	897
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	43, 96, 398, 787
BstDEI	CTNAG	3 cut(s)	55, 311, 611
BstF5I	GGATG	6 cut(s)	198, 467, 571, 597, 680, 832
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	2 cut(s)	427, 506
BstMAI	GTCTC	3 cut(s)	561, 612, 696
BstMBI	GATC	2 cut(s)	424, 503
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 113, 141, 393, 791
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	2 cut(s)	105, 292
BstV1I	GCAGC	1 cut(s)	869
BsuRI	GGCC	3 cut(s)	160, 465, 479
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	6 cut(s)	198, 467, 571, 597, 680, 832
BtsIMutI	CAGTG	3 cut(s)	6, 301, 746
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	4 cut(s)	43, 96, 398, 787
CfoI	GCGC	1 cut(s)	785
Cfr13I	GGNCC	3 cut(s)	175, 464, 615
Csp6I	GTAC	5 cut(s)	4, 488, 539, 727, 770
CviQI	GTAC	5 cut(s)	4, 488, 539, 727, 770
DdeI	CTNAG	3 cut(s)	55, 311, 611
DpnI	GATC	2 cut(s)	426, 505
DpnII	GATC	2 cut(s)	424, 503
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
EciI	GGCGGA	1 cut(s)	614
Eco147I	AGGCCT	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	561, 696
Eco32I	GATATC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	175, 615
Eco57I	CTGAAG	3 cut(s)	246, 420, 507
Eco88I	CYCGRG	2 cut(s)	171, 754
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	761
FalI	AAGNNNNNCTT	4 cut(s)	544, 576, 778, 810
FaqI	GGGAC	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	858
FokI	GGATG	6 cut(s)	205, 454, 558, 584, 667, 819
Fsp4HI	GCNGC	1 cut(s)	858
FspBI	CTAG	3 cut(s)	498, 512, 588
GlaI	GCGC	1 cut(s)	784
GluI	GCNGC	1 cut(s)	858
HaeIII	GGCC	3 cut(s)	160, 465, 479
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	785
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HindIII	AAGCTT	2 cut(s)	43, 165
HinfI	GANTC	6 cut(s)	12, 316, 356, 440, 545, 851
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	3 cut(s)	450, 735, 789
Hpy166II	GTNNAC	2 cut(s)	6, 355
Hpy188I	TCNGA	4 cut(s)	179, 439, 534, 765
Hpy188III	TCNNGA	3 cut(s)	756, 808, 896
Hpy8I	GTNNAC	2 cut(s)	6, 355
HpyAV	CCTTC	3 cut(s)	91, 631, 645
HpyCH4III	ACNGT	3 cut(s)	296, 492, 769
HpyCH4V	TGCA	6 cut(s)	41, 107, 258, 275, 396, 407
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 113, 141, 393, 791
HpyF3I	CTNAG	3 cut(s)	55, 311, 611
HspAI	GCGC	1 cut(s)	783
Kzo9I	GATC	2 cut(s)	424, 503
LpnPI	CCDG	8 cut(s)	402, 444, 475, 555, 614, 641, 680, 832
Lsp1109I	GCAGC	1 cut(s)	869
LweI	GCATC	3 cut(s)	394, 524, 841
MaeI	CTAG	3 cut(s)	498, 512, 588
MaeIII	GTNAC	2 cut(s)	265, 329
MalI	GATC	2 cut(s)	426, 505
MboI	GATC	2 cut(s)	424, 503
MboII	GAAGA	3 cut(s)	513, 807, 884
MluCI	AATT	3 cut(s)	36, 182, 673
MlyI	GAGTC	3 cut(s)	6, 350, 860
MmeI	TCCRAC	1 cut(s)	280
MslI	CAYNNNNRTG	3 cut(s)	20, 26, 846
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	905
MwoI	GCNNNNNNNGC	5 cut(s)	104, 113, 141, 393, 791
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	424, 503
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PctI	GAATGC	1 cut(s)	905
PfeI	GAWTC	3 cut(s)	316, 440, 545
PkrI	GCNGC	1 cut(s)	859
PleI	GAGTC	3 cut(s)	6, 350, 859
PpsI	GAGTC	3 cut(s)	6, 350, 859
PpuMI	RGGWCCY	1 cut(s)	615
PscI	ACATGT	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	175, 464, 615
PspPPI	RGGWCCY	1 cut(s)	615
PstI	CTGCAG	1 cut(s)	109
RsaI	GTAC	5 cut(s)	5, 489, 540, 728, 771
RsaNI	GTAC	5 cut(s)	4, 488, 539, 727, 770
RseI	CAYNNNNRTG	3 cut(s)	20, 26, 846
SatI	GCNGC	1 cut(s)	858
Sau3AI	GATC	2 cut(s)	424, 503
Sau96I	GGNCC	3 cut(s)	175, 464, 615
SchI	GAGTC	3 cut(s)	6, 350, 860
ScrFI	CCNGG	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	394, 524, 841
SfcI	CTRYAG	2 cut(s)	105, 292
Sfr274I	CTCGAG	1 cut(s)	754
SinI	GGWCC	2 cut(s)	175, 615
SlaI	CTCGAG	1 cut(s)	754
SmiMI	CAYNNNNRTG	3 cut(s)	20, 26, 846
SmlI	CTYRAG	4 cut(s)	162, 284, 754, 808
SmoI	CTYRAG	4 cut(s)	162, 284, 754, 808
Sse9I	AATT	3 cut(s)	36, 182, 673
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	625, 670
SspMI	CTAG	3 cut(s)	498, 512, 588
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	296, 492, 769
TaqI	TCGA	2 cut(s)	443, 755
TasI	AATT	3 cut(s)	36, 182, 673
TatI	WGTACW	2 cut(s)	3, 487
TfiI	GAWTC	3 cut(s)	316, 440, 545
TscAI	CASTG	3 cut(s)	13, 301, 753
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	73, 176, 329, 360
TspRI	CASTG	3 cut(s)	13, 301, 753
VpaK11BI	GGWCC	2 cut(s)	175, 615
XapI	RAATTY	2 cut(s)	182, 673
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	754
XspI	CTAG	3 cut(s)	498, 512, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.