Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

19102598 .. 19104802

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGCTGTGGCTAATTGCAAGCTTTGAGAATACAGCATGGTCAATCATGGCAATCTCTTTCATTTCATTGCTTGCCATGTCTGCAGTGCTGGCTACTTGTTTTTTCGTTCGCAGGCATCGAATAAGACGAGAGAGGCCTCAAGCTTCTCGTGTCCAAGAATTTCATGGGATGAGCAAACGCTTAGTAAAAGCAATGCCAAGTTTGAAATTTACCACTGTTTTAGAGGACAACTGCACATCAAGCACATGTGCTATATGTCTTGAGGACTATAACTTTGGAGAAAAACTCAGGATTCTGCCATGTCGCCATAAGTTTCATGCTCTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAGCTAACACGGGTGAACTACCCGCTTCAGAATCCACACCATTGCTTTCGTCCGGCCCATCCTCCATGGCATCTTCCGTACTTTCATCTATGAGATCATCAATAGCATCATCTTCAGCAATACAGATAGGACCATCATTGTCACGGAACCCTTCATTGTCTCATTCTCCCTCTTACGCTAGCACAGGTCACATTCAGCAGTCTCTTAGGTCCTCCTATCGCCAGTCCCCTTCTATTAGTGCAAGCAGAAGTTCAATGGACCTCCGAAATGCCTCGTCTCAAAGGTCCCATGTTTCCTATTTTGTTTCACCCCATTCCTTGGGTTACCCAACCTTATTACCCCCGAATTCAAGATACATGTCTGTTGGACACATTCCAAGCCCTAGCAATGCATCACCAAGCTACATGAGCTCTTCCAATCATCGACCGCATCCACTACATTGTAGTGAATCAGCTGCAACGTTTTCTCCTTTTTCTTCTGCTCAATCTCTTCCTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

297

Amino Acids

32.53

Weight (kDa)

9.52

Isoelectric Point (pI)

88.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	83 - 126	1.4e-12	Ring finger domain
zf-RING_11	PF17123	84 - 111	1.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	84 - 125	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	84 - 125	7.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	706
AciI	CCGC	2 cut(s)	411, 815
AclI	AACGTT	1 cut(s)	848
AcsI	RAATTY	3 cut(s)	161, 209, 733
AcuI	CTGAAG	2 cut(s)	399, 486
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflIII	ACRYGT	2 cut(s)	248, 744
AgsI	TTSAA	3 cut(s)	208, 642, 738
AloI	GAACNNNNNNTCC	2 cut(s)	349, 381
AluBI	AGCT	7 cut(s)	7, 24, 146, 392, 789, 798, 842
AluI	AGCT	7 cut(s)	7, 24, 146, 392, 789, 798, 842
Alw21I	GWGCWC	1 cut(s)	800
Alw26I	GTCTC	3 cut(s)	552, 594, 669
AoxI	GGCC	2 cut(s)	137, 442
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	3 cut(s)	161, 209, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	5 cut(s)	443, 518, 597, 646, 672
AsuHPI	GGTGA	3 cut(s)	413, 687, 774
AsuNHI	GCTAGC	1 cut(s)	566
AvaII	GGWCC	4 cut(s)	518, 597, 646, 672
BanII	GRGCYC	1 cut(s)	800
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	800
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	2 cut(s)	454, 529
BcoDI	GTCTC	3 cut(s)	552, 594, 669
BfaI	CTAG	2 cut(s)	567, 771
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	844
Bme18I	GGWCC	4 cut(s)	518, 597, 646, 672
BmgT120I	GGNCC	5 cut(s)	443, 518, 597, 646, 672
BmiI	GGNNCC	2 cut(s)	536, 674
BmsI	GCATC	6 cut(s)	127, 373, 467, 503, 788, 826
BmtI	GCTAGC	1 cut(s)	570
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpuEI	CTTGAG	2 cut(s)	126, 284
BsaJI	CCNNGG	2 cut(s)	453, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	368, 610
Bse3DI	GCAATG	4 cut(s)	68, 201, 428, 781
BseDI	CCNNGG	2 cut(s)	453, 705
BseGI	GGATG	3 cut(s)	177, 446, 817
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	4 cut(s)	68, 201, 428, 781
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	368, 610
BseXI	GCAGC	1 cut(s)	829
BsgI	GTGCAG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	2 cut(s)	139, 444
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	800
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	598, 658
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	552, 594, 669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	2 cut(s)	598, 658
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	2 cut(s)	139, 444
Bsp1286I	GDGCHC	1 cut(s)	800
Bsp143I	GATC	1 cut(s)	482
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	411, 815
BspANI	GGCC	2 cut(s)	139, 444
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	536, 674
BspMAI	CTGCAG	1 cut(s)	88
BspOI	GCTAGC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	805
BsrDI	GCAATG	4 cut(s)	68, 201, 428, 781
BsrI	ACTGG	2 cut(s)	368, 610
BssECI	CCNNGG	2 cut(s)	453, 705
BssMI	GATC	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	453, 705
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	805, 882
BstC8I	GCNNGC	7 cut(s)	22, 75, 93, 116, 377, 568, 631
BstDEI	CTNAG	3 cut(s)	184, 290, 593
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	710
BstF5I	GGATG	3 cut(s)	177, 446, 817
BstKTI	GATC	1 cut(s)	485
BstMAI	GTCTC	3 cut(s)	552, 594, 669
BstMBI	GATC	1 cut(s)	482
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 243, 795
BstNSI	RCATGY	2 cut(s)	252, 748
BstPI	GGTNACC	1 cut(s)	710
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	139, 444
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	177, 446, 817
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 216
Cac8I	GCNNGC	7 cut(s)	22, 75, 93, 116, 377, 568, 631
Cfr13I	GGNCC	5 cut(s)	443, 518, 597, 646, 672
Csp6I	GTAC	1 cut(s)	467
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	3 cut(s)	184, 290, 593
DpnI	GATC	1 cut(s)	484
DpnII	GATC	1 cut(s)	482
Eam1104I	CTCTTC	2 cut(s)	805, 882
EarI	CTCTTC	2 cut(s)	805, 882
Ecl136II	GAGCTC	1 cut(s)	798
Eco130I	CCWWGG	2 cut(s)	453, 705
Eco147I	AGGCCT	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	800
Eco47I	GGWCC	4 cut(s)	518, 597, 646, 672
Eco53kI	GAGCTC	1 cut(s)	798
Eco57I	CTGAAG	2 cut(s)	399, 486
Eco91I	GGTNACC	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	798
EcoO109I	RGGNCCY	2 cut(s)	597, 672
EcoO65I	GGTNACC	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	453, 705
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	800
ErhI	CCWWGG	2 cut(s)	453, 705
Esp3I	CGTCTC	1 cut(s)	669
FaqI	GGGAC	2 cut(s)	598, 658
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	3 cut(s)	184, 433, 804
FriOI	GRGCYC	1 cut(s)	800
Fsp4HI	GCNGC	1 cut(s)	843
FspBI	CTAG	2 cut(s)	567, 771
GluI	GCNGC	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	139, 444
HapII	CCGG	1 cut(s)	441
HindIII	AAGCTT	2 cut(s)	22, 144
HinfI	GANTC	4 cut(s)	295, 335, 419, 836
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	413, 687, 774
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	418, 653
Hpy188III	TCNNGA	4 cut(s)	263, 292, 738, 881
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	549, 627
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	8 cut(s)	20, 86, 237, 375, 386, 629, 779, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 243, 795
HpyF3I	CTNAG	3 cut(s)	184, 290, 593
HpySE526I	ACGT	1 cut(s)	848
Kzo9I	GATC	1 cut(s)	482
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	77, 100, 277, 381, 454, 558, 623
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	6 cut(s)	127, 373, 467, 503, 788, 826
MaeI	CTAG	2 cut(s)	567, 771
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	3 cut(s)	528, 575, 710
MalI	GATC	1 cut(s)	484
MboI	GATC	1 cut(s)	482
MboII	GAAGA	5 cut(s)	453, 492, 792, 855, 869
MhlI	GDGCHC	1 cut(s)	800
MluCI	AATT	4 cut(s)	15, 161, 209, 733
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	9 cut(s)	129, 150, 220, 259, 460, 568, 610, 659, 670
Mph1103I	ATGCAT	1 cut(s)	781
MslI	CAYNNNNRTG	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	890
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 243, 795
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	1 cut(s)	482
NheI	GCTAGC	1 cut(s)	566
NlaIV	GGNNCC	2 cut(s)	536, 674
NmuCI	GTSAC	2 cut(s)	528, 575
NsiI	ATGCAT	1 cut(s)	781
NspI	RCATGY	2 cut(s)	252, 748
PceI	AGGCCT	1 cut(s)	139
PciI	ACATGT	2 cut(s)	248, 744
PciSI	GCTCTTC	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	2 cut(s)	118, 127
PctI	GAATGC	1 cut(s)	890
PfeI	GAWTC	4 cut(s)	295, 335, 419, 836
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	1 cut(s)	844
PpuMI	RGGWCCY	2 cut(s)	597, 672
PscI	ACATGT	2 cut(s)	248, 744
Psp124BI	GAGCTC	1 cut(s)	800
Psp1406I	AACGTT	1 cut(s)	848
Psp5II	RGGWCCY	2 cut(s)	597, 672
PspEI	GGTNACC	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	536, 674
PspPI	GGNCC	5 cut(s)	443, 518, 597, 646, 672
PspPPI	RGGWCCY	2 cut(s)	597, 672
PstI	CTGCAG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	1 cut(s)	800
SapI	GCTCTTC	1 cut(s)	805
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	1 cut(s)	482
Sau96I	GGNCC	5 cut(s)	443, 518, 597, 646, 672
SduI	GDGCHC	1 cut(s)	800
SfaNI	GCATC	6 cut(s)	127, 373, 467, 503, 788, 826
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	4 cut(s)	518, 597, 646, 672
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	141, 263
SmoI	CTYRAG	2 cut(s)	141, 263
Sse9I	AATT	4 cut(s)	15, 161, 209, 733
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	411, 815
SspMI	CTAG	2 cut(s)	567, 771
SstI	GAGCTC	1 cut(s)	800
StuI	AGGCCT	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	453, 705
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	2 cut(s)	121, 811
TasI	AATT	4 cut(s)	15, 161, 209, 733
TfiI	GAWTC	4 cut(s)	295, 335, 419, 836
TscAI	CASTG	2 cut(s)	93, 223
TseFI	GTSAC	2 cut(s)	528, 575
TseI	GCWGC	1 cut(s)	842
Tsp45I	GTSAC	2 cut(s)	528, 575
TspDTI	ATGAA	7 cut(s)	52, 57, 155, 308, 339, 462, 531
TspGWI	ACGGA	2 cut(s)	454, 547
TspRI	CASTG	2 cut(s)	93, 223
Van91I	CCANNNNNTGG	1 cut(s)	706
VpaK11BI	GGWCC	4 cut(s)	518, 597, 646, 672
XapI	RAATTY	3 cut(s)	161, 209, 733
XceI	RCATGY	2 cut(s)	252, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XspI	CTAG	2 cut(s)	567, 771
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.