Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

21693611 .. 21694156

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACTTGGCTTGATGAGTTTAAACATGCACGCTCATCTACGAGTGTGAAGCAGCAGAGAGTGCAGCCAAGCTGGACCCCTGCGCCGGGTAATCAAGTTAAAGTCAACGTTGATGGAGCTTTCTTGCCATCACTTACTCATGGAGGCCTGGGTGGAATTGCACTGGACTCTCAAGGTCAGTTTCTAGCATGCTTTGCTCAATGTGTGCAGCATATTACCTCAGTCAAACATGCAGAGTTGCACGCTATAAGAGCGGGACTTGACTTCATTCAACAGCTGCAACTCACTTCGGCCATTGCAGCAGTACAAGATATATCATACGACGGAGCTGCACTTTCTGAGTATGGTAGAATAATTGATGATATTAATGTAGCATTGCACAGTTTGCAGGGAGTACAGATCATATATGCTCCTAGGAGTTGTAACAAAGCAGCCCACCGGCTCGCTAGTATTGGCTTTGAATCAAATCAGCATGAGACTTGGCTCTCTCAAGTTCCGAGTTGTATGATTGATGTACTGAACCATGATTGTAACTCTTTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

181

Amino Acids

19.68

Weight (kDa)

6.09

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	36 - 150	1.1e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	254
AciI	CCGC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	291
AfaI	GTAC	3 cut(s)	306, 396, 516
AfiI	CCNNNNNNNGG	2 cut(s)	85, 86
AgsI	TTSAA	2 cut(s)	272, 461
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	72, 119, 277, 329
AluI	AGCT	4 cut(s)	72, 119, 277, 329
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	145, 291
ApeKI	GCWGC	7 cut(s)	52, 64, 208, 277, 299, 329, 431
AseI	ATTAAT	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	75
AvrII	CCTAGG	1 cut(s)	413
BbvI	GCAGC	7 cut(s)	64, 76, 220, 264, 311, 316, 443
BccI	CCATC	2 cut(s)	107, 136
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	3 cut(s)	185, 414, 447
BisI	GCNGC	7 cut(s)	53, 65, 209, 278, 300, 330, 432
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	7 cut(s)	54, 66, 210, 279, 301, 331, 433
Bme1390I	CCNGG	2 cut(s)	87, 149
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	87, 149
BpuEI	CTTGAG	2 cut(s)	156, 474
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	148, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 86
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	294, 374
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	148, 413
BseLI	CCNNNNNNNGG	2 cut(s)	85, 86
BseMI	GCAATG	2 cut(s)	294, 374
BseMII	CTCAG	2 cut(s)	234, 330
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	7 cut(s)	64, 76, 220, 264, 311, 316, 443
BsgI	GTGCAG	3 cut(s)	83, 227, 315
BshFI	GGCC	2 cut(s)	147, 293
BsiSI	CCGG	2 cut(s)	86, 439
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	85, 86
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	147, 293
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	147, 293
BspCNI	CTCAG	2 cut(s)	233, 331
BspLI	GGNNCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	294, 374
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	148, 413
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	383
BstAPI	GCANNNNNTGC	3 cut(s)	61, 194, 385
BstC8I	GCNNGC	4 cut(s)	31, 190, 243, 444
BstDEI	CTNAG	3 cut(s)	220, 339, 543
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 194, 251, 299, 385
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	3 cut(s)	29, 192, 233
BstSCI	CCNGG	2 cut(s)	85, 147
BstV1I	GCAGC	7 cut(s)	64, 76, 220, 264, 311, 316, 443
BsuRI	GGCC	2 cut(s)	147, 293
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	4 cut(s)	31, 190, 243, 444
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	305, 395, 515
CviAII	CATG	6 cut(s)	26, 140, 189, 230, 473, 524
CviQI	GTAC	3 cut(s)	305, 395, 515
DdeI	CTNAG	3 cut(s)	220, 339, 543
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraI	TTTAAA	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	6 cut(s)	29, 143, 192, 233, 476, 527
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	6 cut(s)	25, 139, 188, 229, 472, 523
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	7 cut(s)	53, 65, 209, 278, 300, 330, 432
Fsp4HI	GCNGC	7 cut(s)	53, 65, 209, 278, 300, 330, 432
FspBI	CTAG	3 cut(s)	185, 414, 447
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	7 cut(s)	53, 65, 209, 278, 300, 330, 432
HaeIII	GGCC	2 cut(s)	147, 293
HapII	CCGG	2 cut(s)	86, 439
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	29, 143, 192, 233, 476, 527
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	167, 461
HpaII	CCGG	2 cut(s)	86, 439
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	340, 498
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 194, 251, 299, 385
HpyF3I	CTNAG	3 cut(s)	220, 339, 543
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	29, 143, 192, 233, 476, 527
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	116, 326, 415
LpnPI	CCDG	8 cut(s)	58, 93, 99, 134, 149, 161, 374, 452
Lsp1109I	GCAGC	7 cut(s)	64, 76, 220, 264, 311, 316, 443
MaeI	CTAG	3 cut(s)	185, 414, 447
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	422, 530
MalI	GATC	1 cut(s)	401
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	1 cut(s)	399
MluCI	AATT	2 cut(s)	156, 354
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	137, 229
MseI	TTAA	3 cut(s)	21, 99, 366
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	86, 439
MspR9I	CCNGG	2 cut(s)	87, 149
MssI	GTTTAAAC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	61, 194, 251, 299, 385
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	6 cut(s)	29, 143, 192, 233, 476, 527
NlaIV	GGNNCC	1 cut(s)	77
NspI	RCATGY	3 cut(s)	29, 192, 233
PaeI	GCATGC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	7 cut(s)	54, 66, 210, 279, 301, 331, 433
PleI	GAGTC	1 cut(s)	161
PmeI	GTTTAAAC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	3 cut(s)	306, 396, 516
RsaNI	GTAC	3 cut(s)	305, 395, 515
SaqAI	TTAA	3 cut(s)	21, 99, 366
SatI	GCNGC	7 cut(s)	53, 65, 209, 278, 300, 330, 432
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	87, 149
SetI	ASST	7 cut(s)	74, 111, 121, 178, 221, 279, 331
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	171, 489
SmoI	CTYRAG	2 cut(s)	171, 489
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	156, 354
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	185, 414, 447
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	85, 147
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	111
TasI	AATT	2 cut(s)	156, 354
TatI	WGTACW	3 cut(s)	304, 394, 514
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	21, 99, 366
Tru9I	TTAA	3 cut(s)	21, 99, 366
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	7 cut(s)	52, 64, 208, 277, 299, 329, 431
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	366
XceI	RCATGY	3 cut(s)	29, 192, 233
XmaJI	CCTAGG	1 cut(s)	413
XspI	CTAG	3 cut(s)	185, 414, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.