MD08G1219500.v1.1

Receptor homology region, transmembrane domain- and RING domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
28214368 .. 28221285
6918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1219500.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGAGCACTATGAATCTGGCGGTGGTTCTGGTGGCGGTGGCGGTGGTTCTGTTCGGCCGATTTTGCATCACCAAGGCCAATGTGGTGCTGATGGGGAACAACGTCACTCTCTCTTTCGACGACAAGGAAGCTACTTTTGCTCCGGAGGTTAAGGGTTCCGGGGAATGCGGAGTATTGTATTTGGCCGAGCCTCCTCATGCGTGCTCGACATTGACTAATCAAGTCGAACAAGGCACGAATTATAGCTCCCCCTTCGTTTTGATCGTAAGAGGAGGGTGTAGTTTTGAGGATAAAGTTAGAAGAGCACAAAAGGCCGGCTTCAAAGCTGCAATTATCTACGACAATGAAGATAGCAACATCTTGGTTTCAATGGCAGGAAGCTCAGCTGGTATAAAAATATACGCCGTGTTCGTTTCGAAAACTTCTGGTGAACTACTAAAGAAGTACATTGGACTTACTAACATGGAGCTGTGGCTAATTGCAAGCTTTGAGAATACAGCATGGTCAATCATGGCAATCTCTTTCATTTCATTGCTTGCCATGTCTGCAGTGCTGGCTACTTGTTTTTTCGTTCGCAGGCATCGAATAAGACGAGAGAGGCCTCAAGCTTTTCGTGTCCAAGAATTTCATGGGATGAGCAAACGCTTAGTAAAAGCAATGCCAAGTTTGAAATTTACCACTGTTTTAGAGGACAACTGCACATCAAGCACATGTGCTATATGTCTTGAGGACTATAACTTTGGAGAAAAACTCAGGATTCTGCCATGTCGCCATAAGTTTCATGCTTTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAGCTAATACGGGTGATCTACCCGCTTCAGAATCCACACCATTGCTTTCGTCCGGCCCATCCTCCGTGGCATCTTCCGTACTTTCATCTATGAGATCATCAATAGCATCATCTTCAGCAATACAGATAGGACCATCATTGTCACGGAACCCTTCATTGTCTCATTCTCACTCTTATGCTAGCACAGGTCACATTCAGCAGTCTCTTAGGTCCTCCTATCGCCAGTCCCCTTCTATTAGTGCAAGCAGAAGTTCAATGGACCTCCGAAATGCCTCGTCTCAAAGGTCCCATGTTTCCTATTTTGTTTCACCCCATTCCATGGGTTACCCAACTTTATTACCCCCGAATTCAAGATACATGTCTGTTGGACACATTCCAAGCCCTAGCAATGCATCACCAAGCTACATGAGCTCTTCCAATCATCGACAGCATCCACTACATTGTAGTGAATCAGCTGCAACGTTTTCTCCTTTTTCTTCTGCTCAATCTCTTCCTGAATGCTGA

Protein Analysis

451

Amino Acids

49.06

Weight (kDa)

9.17

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 62 - 146 2.7e-13 PA domain
zf-RING_2 PF13639 237 - 280 4.6e-12 Ring finger domain
zf-RING_11 PF17123 238 - 265 7e-09 RING-like zinc finger
zf-C3HC4 PF00097 238 - 279 1.3e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 5 cut(s) 20, 35, 41, 168, 873
AclI AACGTT 1 cut(s) 1310
AcoI YGGCCR 2 cut(s) 55, 183
AcsI RAATTY 3 cut(s) 623, 671, 1195
AcuI CTGAAG 2 cut(s) 861, 948
AfaI GTAC 2 cut(s) 446, 930
AfiI CCNNNNNNNGG 1 cut(s) 1168
AflIII ACRYGT 2 cut(s) 710, 1206
AgsI TTSAA 5 cut(s) 322, 369, 670, 1104, 1200
AloI GAACNNNNNNTCC 2 cut(s) 811, 843
Alw21I GWGCWC 4 cut(s) 8, 206, 307, 1262
Alw26I GTCTC 3 cut(s) 1014, 1056, 1131
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 6 cut(s) 55, 75, 183, 312, 599, 904
ApeKI GCWGC 2 cut(s) 326, 1304
ApoI RAATTY 3 cut(s) 623, 671, 1195
ArsI GACNNNNNNTTYG 2 cut(s) 722, 754
AspS9I GGNCC 5 cut(s) 905, 980, 1059, 1108, 1134
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 5 cut(s) 61, 440, 875, 1149, 1236
AsuII TTCGAA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 1028
AvaII GGWCC 4 cut(s) 980, 1059, 1108, 1134
BanII GRGCYC 1 cut(s) 1262
Bbv12I GWGCWC 4 cut(s) 8, 206, 307, 1262
BbvI GCAGC 2 cut(s) 313, 1291
BccI CCATC 3 cut(s) 85, 916, 991
BceAI ACGGC 1 cut(s) 389
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 1014, 1056, 1131
BfaI CTAG 2 cut(s) 1029, 1233
BfmI CTRYAG 1 cut(s) 546
BisI GCNGC 2 cut(s) 327, 1305
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 2 cut(s) 328, 1306
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 4 cut(s) 980, 1059, 1108, 1134
BmgT120I GGNCC 5 cut(s) 905, 980, 1059, 1108, 1134
BmiI GGNNCC 3 cut(s) 157, 998, 1136
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 7 cut(s) 75, 589, 835, 929, 965, 1250, 1288
BmtI GCTAGC 1 cut(s) 1032
BplI GAGNNNNNCTC 2 cut(s) 735, 767
Bpu1102I GCTNAGC 1 cut(s) 382
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 588, 746
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 4 cut(s) 72, 159, 915, 1167
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 1300, 1330
Bsc4I CCNNNNNNNGG 1 cut(s) 1168
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 830, 1072
Bse3DI GCAATG 4 cut(s) 530, 663, 890, 1243
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 4 cut(s) 72, 159, 915, 1167
BseGI GGATG 3 cut(s) 639, 908, 1279
BseLI CCNNNNNNNGG 1 cut(s) 1168
BseMI GCAATG 4 cut(s) 530, 663, 890, 1243
BseMII CTCAG 2 cut(s) 396, 766
BseNI ACTGG 2 cut(s) 830, 1072
BseRI GAGGAG 2 cut(s) 183, 285
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 313, 1291
BsgI GTGCAG 1 cut(s) 682
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 6 cut(s) 57, 77, 185, 314, 601, 906
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 4 cut(s) 8, 206, 307, 1262
BsiSI CCGG 4 cut(s) 143, 159, 315, 903
BslFI GGGAC 2 cut(s) 1060, 1120
BslI CCNNNNNNNGG 1 cut(s) 1168
BsmAI GTCTC 3 cut(s) 1014, 1056, 1131
BsmBI CGTCTC 1 cut(s) 1131
BsmFI GGGAC 2 cut(s) 1060, 1120
BsmI GAATGC 2 cut(s) 170, 1352
BsnI GGCC 6 cut(s) 57, 77, 185, 314, 601, 906
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 4 cut(s) 8, 206, 307, 1262
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 261, 865, 944
Bsp1720I GCTNAGC 1 cut(s) 382
Bsp19I CCATGG 1 cut(s) 1167
BspACI CCGC 5 cut(s) 20, 35, 41, 168, 873
BspANI GGCC 6 cut(s) 57, 77, 185, 314, 601, 906
BspCNI CTCAG 2 cut(s) 395, 765
BspEI TCCGGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 157, 998, 1136
BspMAI CTGCAG 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 1032
BspQI GCTCTTC 2 cut(s) 295, 1267
BspT104I TTCGAA 1 cut(s) 416
BsrDI GCAATG 4 cut(s) 530, 663, 890, 1243
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 830, 1072
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 4 cut(s) 72, 159, 915, 1167
BssMI GATC 3 cut(s) 261, 865, 944
BssT1I CCWWGG 2 cut(s) 72, 1167
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 3 cut(s) 295, 1267, 1344
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 9 cut(s) 202, 316, 484, 537, 555, 578, 839, 1030, 1093
BstDEI CTNAG 4 cut(s) 382, 646, 752, 1055
BstDSI CCRYGG 2 cut(s) 915, 1167
BstEII GGTNACC 1 cut(s) 1172
BstF5I GGATG 3 cut(s) 639, 908, 1279
BstKTI GATC 3 cut(s) 264, 868, 947
BstMAI GTCTC 3 cut(s) 1014, 1056, 1131
BstMBI GATC 3 cut(s) 261, 865, 944
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 7 cut(s) 63, 137, 311, 545, 554, 705, 1257
BstNSI RCATGY 2 cut(s) 714, 1210
BstPI GGTNACC 1 cut(s) 1172
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 2 cut(s) 313, 1291
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 6 cut(s) 57, 77, 185, 314, 601, 906
BtgI CCRYGG 2 cut(s) 915, 1167
BtsCI GGATG 3 cut(s) 639, 908, 1279
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 555, 678
Cac8I GCNNGC 9 cut(s) 202, 316, 484, 537, 555, 578, 839, 1030, 1093
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 5 cut(s) 905, 980, 1059, 1108, 1134
Csp6I GTAC 2 cut(s) 445, 929
CviQI GTAC 2 cut(s) 445, 929
DdeI CTNAG 4 cut(s) 382, 646, 752, 1055
DpnI GATC 3 cut(s) 263, 867, 946
DpnII GATC 3 cut(s) 261, 865, 944
EaeI YGGCCR 2 cut(s) 55, 183
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 295, 1267, 1344
EarI CTCTTC 3 cut(s) 295, 1267, 1344
Ecl136II GAGCTC 1 cut(s) 1260
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 72, 1167
Eco147I AGGCCT 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 1262
Eco47I GGWCC 4 cut(s) 980, 1059, 1108, 1134
Eco52I CGGCCG 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 1260
Eco57I CTGAAG 2 cut(s) 861, 948
Eco91I GGTNACC 1 cut(s) 1172
EcoICRI GAGCTC 1 cut(s) 1260
EcoO109I RGGNCCY 2 cut(s) 1059, 1134
EcoO65I GGTNACC 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 1195
EcoT14I CCWWGG 2 cut(s) 72, 1167
EcoT22I ATGCAT 1 cut(s) 1243
EcoT38I GRGCYC 1 cut(s) 1262
ErhI CCWWGG 2 cut(s) 72, 1167
Esp3I CGTCTC 1 cut(s) 1131
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 2 cut(s) 1060, 1120
FauI CCCGC 1 cut(s) 880
Fnu4HI GCNGC 2 cut(s) 327, 1305
FokI GGATG 3 cut(s) 646, 895, 1266
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 2 cut(s) 327, 1305
FspBI CTAG 2 cut(s) 1029, 1233
GluI GCNGC 2 cut(s) 327, 1305
HaeIII GGCC 6 cut(s) 57, 77, 185, 314, 601, 906
HapII CCGG 4 cut(s) 143, 159, 315, 903
HindIII AAGCTT 2 cut(s) 484, 606
HinfI GANTC 5 cut(s) 13, 757, 797, 881, 1298
HpaII CCGG 4 cut(s) 143, 159, 315, 903
HphI GGTGA 5 cut(s) 61, 440, 875, 1149, 1236
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 2 cut(s) 880, 1115
Hpy188III TCNNGA 5 cut(s) 143, 725, 754, 1200, 1343
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 262, 1011, 1089
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 2 cut(s) 102, 1310
HpyF10VI GCNNNNNNNGC 7 cut(s) 63, 137, 311, 545, 554, 705, 1257
HpyF3I CTNAG 4 cut(s) 382, 646, 752, 1055
HpySE526I ACGT 2 cut(s) 102, 1310
Kpn2I TCCGGA 1 cut(s) 142
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 261, 865, 944
LguI GCTCTTC 2 cut(s) 295, 1267
LmnI GCTCC 3 cut(s) 145, 251, 466
Lsp1109I GCAGC 2 cut(s) 313, 1291
LweI GCATC 7 cut(s) 75, 589, 835, 929, 965, 1250, 1288
MaeI CTAG 2 cut(s) 1029, 1233
MaeII ACGT 2 cut(s) 102, 1310
MaeIII GTNAC 4 cut(s) 103, 990, 1037, 1172
MalI GATC 3 cut(s) 263, 867, 946
MboI GATC 3 cut(s) 261, 865, 944
MboII GAAGA 7 cut(s) 312, 359, 915, 954, 1254, 1317, 1331
MhlI GDGCHC 4 cut(s) 8, 206, 307, 1262
MluCI AATT 6 cut(s) 238, 330, 477, 623, 671, 1195
MmeI TCCRAC 1 cut(s) 1195
Mph1103I ATGCAT 1 cut(s) 1243
MroI TCCGGA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 314
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 2 cut(s) 1023, 1293
MspA1I CMGCKG 2 cut(s) 386, 1304
MspI CCGG 4 cut(s) 143, 159, 315, 903
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 2 cut(s) 170, 1352
MwoI GCNNNNNNNGC 7 cut(s) 63, 137, 311, 545, 554, 705, 1257
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 1 cut(s) 1167
NdeII GATC 3 cut(s) 261, 865, 944
NgoMIV GCCGGC 1 cut(s) 314
NheI GCTAGC 1 cut(s) 1028
NlaIV GGNNCC 3 cut(s) 157, 998, 1136
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 3 cut(s) 103, 990, 1037
NsiI ATGCAT 1 cut(s) 1243
NspI RCATGY 2 cut(s) 714, 1210
NspV TTCGAA 1 cut(s) 416
PceI AGGCCT 1 cut(s) 601
PciI ACATGT 2 cut(s) 710, 1206
PciSI GCTCTTC 2 cut(s) 295, 1267
PcsI WCGNNNNNNNCGW 4 cut(s) 261, 408, 580, 589
PctI GAATGC 2 cut(s) 170, 1352
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 5 cut(s) 13, 757, 797, 881, 1298
PflMI CCANNNNNTGG 1 cut(s) 1168
PkrI GCNGC 2 cut(s) 328, 1306
PpuMI RGGWCCY 2 cut(s) 1059, 1134
PscI ACATGT 2 cut(s) 710, 1206
Psp124BI GAGCTC 1 cut(s) 1262
Psp1406I AACGTT 1 cut(s) 1310
Psp5II RGGWCCY 2 cut(s) 1059, 1134
PspEI GGTNACC 1 cut(s) 1172
PspN4I GGNNCC 3 cut(s) 157, 998, 1136
PspPI GGNCC 5 cut(s) 905, 980, 1059, 1108, 1134
PspPPI RGGWCCY 2 cut(s) 1059, 1134
PstI CTGCAG 1 cut(s) 550
PvuII CAGCTG 2 cut(s) 386, 1304
RsaI GTAC 2 cut(s) 446, 930
RsaNI GTAC 2 cut(s) 445, 929
RseI CAYNNNNRTG 2 cut(s) 1023, 1293
SacI GAGCTC 1 cut(s) 1262
SapI GCTCTTC 2 cut(s) 295, 1267
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 327, 1305
Sau3AI GATC 3 cut(s) 261, 865, 944
Sau96I GGNCC 5 cut(s) 905, 980, 1059, 1108, 1134
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 4 cut(s) 8, 206, 307, 1262
SfaNI GCATC 7 cut(s) 75, 589, 835, 929, 965, 1250, 1288
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 4 cut(s) 980, 1059, 1108, 1134
SmiMI CAYNNNNRTG 2 cut(s) 1023, 1293
SmlI CTYRAG 2 cut(s) 603, 725
SmoI CTYRAG 2 cut(s) 603, 725
Sse9I AATT 6 cut(s) 238, 330, 477, 623, 671, 1195
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 5 cut(s) 20, 35, 41, 168, 873
SspMI CTAG 2 cut(s) 1029, 1233
SstI GAGCTC 1 cut(s) 1262
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 72, 1167
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 2 cut(s) 105, 1313
TaqI TCGA 6 cut(s) 117, 206, 225, 416, 583, 1273
TasI AATT 6 cut(s) 238, 330, 477, 623, 671, 1195
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 5 cut(s) 13, 757, 797, 881, 1298
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 555, 685
TseFI GTSAC 3 cut(s) 103, 990, 1037
TseI GCWGC 2 cut(s) 326, 1304
Tsp45I GTSAC 3 cut(s) 103, 990, 1037
TspDTI ATGAA 9 cut(s) 26, 360, 514, 519, 617, 770, 801, 924, 993
TspGWI ACGGA 3 cut(s) 904, 916, 1009
TspRI CASTG 2 cut(s) 555, 685
Van91I CCANNNNNTGG 1 cut(s) 1168
VpaK11BI GGWCC 4 cut(s) 980, 1059, 1108, 1134
XapI RAATTY 3 cut(s) 623, 671, 1195
XceI RCATGY 2 cut(s) 714, 1210
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 626
XspI CTAG 2 cut(s) 1029, 1233
Zsp2I ATGCAT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.