Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Reverse (-)

45177945 .. 45185117

Gene Structure 7173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G553100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTTTCTATCCATCGCAACTACACTAATATATATTATCATTTTGCTTCTCTGTCCTTTTCTGTATAACTACTTGAAGAGTTCAATTATCAGGATTGCTAGGGTTTTTGTTTCGAGATTGATGATCACAATGAATCTGGTCGTGGTTTTGGTGGTGTTTCTGTTTGGGCAATTTTCTATGACGAAGGCCAACGTGGTGCTGATCGGGAACAATGTCACTCTCTCTTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATTAAGGGTTCTGGGGAATGTGGAGTATTGTATTTGGCAGAGCCTGTGGATGCATGCTCGACATTGACTAACAAAGTTGAAAAAGGCACGAATTATAGCTCCCCTTTCGTTTTGCTCATAAGAGGAGGGTGTAGTTTTGAGGAAAAAGTTAGAAGAGCTCAGAAGGCCGGGTTCAAAGCTGCAATTGTCTATGACAATGAAGATGGCGGCGTCTTGGTTTCAATGGCAGGAAATTCAGCTGGTATAAAAATACATGCTGTGTTCGTTTCAAAAGCTTCTGGTGAGGTACTGAAAAAGTACGCCGGACTTACTAACATGGAGCTGTGGCTAATCGCAAGCTTTGAGAACTCAGCGTGGTCAATCATGGCAATCTCTTTCATTTCCTTGCTTGCCATGTCTGCAGTGTTGGCTACTTGTTTCTTTGTTCGCAGGCATCGAATAAGACGAGAAAGGCCCCAAGCTTCTCGTGTCCGAGAATTTCATGGGATGAGCAGTCGCTTAGTAAAAGCAATGCCAAGTTTGATATTTACAGCTGTTTTAGAGGACAACTGTACTTCAAGAACATGTGCTATATGTCTTGAGGACTATAGTGTTGGAGAGAAACTCAGAATTCTGCCATGTCGTCATAAATTTCATGCTTTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAGCTAACACGAGTGATCCACCAGCTTCAGAATCCACACCATTGCTTTCATCCAGCCCATCATCATCTGTGGCCTCTTCTGTACTTTCATCTATGAGATCATCTCTAGCATCATCTTCAGCCATGCAGATAGTACCAGCATTGTCGCAGTCTCCATATTCTCTTTCTCACTCTCATGCTAGCTCAACTCACATTCAGCAGTCTCTTAGGTCCTCCTACCGCCAGTCCCCTTCTATTAGTGTCAGCAGAAGCTCACTGGACCTCCGTAATGCCTCGTCCCAAAGATCTCATGCTTCCTATTTTGTTTCCCCCAATTCCTTTGGTTACCCATCTTTGTCACCCCTGAACTCAAGATACCTGTCTGTTGCACACATTCCAAGCCCTAGCAATGCGTCACCAAGCTTCATCAGCTCGTCCAGTCATCAACATCATCCACTACATTGTAGTGAGTCAGCTGCAACATTTTCTCCTTTTGCTTCGGCCCAATCTCTTCCTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

488

Amino Acids

53.09

Weight (kDa)

9.29

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	465, 1180
AclWI	GGATC	1 cut(s)	971
AcsI	RAATTY	4 cut(s)	490, 734, 867, 887
AcuI	CTGAAG	2 cut(s)	972, 1062
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	5 cut(s)	546, 557, 811, 1044, 1095
AflIII	ACRYGT	1 cut(s)	821
AgsI	TTSAA	8 cut(s)	76, 84, 239, 338, 433, 480, 528, 816
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	1116, 1167
AlwI	GGATC	1 cut(s)	971
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	5 cut(s)	186, 423, 710, 1032, 1440
ApeKI	GCWGC	2 cut(s)	437, 1415
ApoI	RAATTY	4 cut(s)	490, 734, 867, 887
AspS9I	GGNCC	4 cut(s)	711, 1170, 1219, 1441
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	3 cut(s)	551, 1290, 1347
AsuNHI	GCTAGC	1 cut(s)	1139
AvaII	GGWCC	2 cut(s)	1170, 1219
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	2 cut(s)	723, 970
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	424, 1402
BccI	CCATC	4 cut(s)	20, 455, 1027, 1297
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	1116, 1167
BfaI	CTAG	4 cut(s)	99, 1067, 1140, 1344
BfmI	CTRYAG	2 cut(s)	657, 844
BglII	AGATCT	1 cut(s)	1244
BisI	GCNGC	3 cut(s)	438, 466, 1416
BlsI	GCNGC	3 cut(s)	439, 467, 1417
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	2 cut(s)	1170, 1219
BmgT120I	GGNCC	4 cut(s)	711, 1170, 1219, 1441
BmiI	GGNNCC	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	427
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	4 cut(s)	298, 700, 946, 1079
BmtI	GCTAGC	1 cut(s)	1143
BmuI	ACTGGG	1 cut(s)	935
BplI	GAGNNNNNCTC	4 cut(s)	846, 878, 1048, 1080
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	857, 1294
BpuMI	CCSGG	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	468
BsaXI	ACNNNNNCTCC	4 cut(s)	1206, 1236, 1411, 1441
Bse1I	ACTGG	4 cut(s)	941, 1183, 1221, 1377
Bse3DI	GCAATG	3 cut(s)	774, 1001, 1354
BseGI	GGATG	4 cut(s)	313, 750, 1010, 1390
BseMI	GCAATG	3 cut(s)	774, 1001, 1354
BseMII	CTCAG	3 cut(s)	431, 621, 877
BseNI	ACTGG	4 cut(s)	941, 1183, 1221, 1377
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	424, 1402
BshFI	GGCC	5 cut(s)	188, 425, 712, 1034, 1442
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	426, 561
BslFI	GGGAC	2 cut(s)	1171, 1222
BsmAI	GTCTC	2 cut(s)	1116, 1167
BsmFI	GGGAC	2 cut(s)	1171, 1222
BsmI	GAATGC	1 cut(s)	1463
BsnI	GGCC	5 cut(s)	188, 425, 712, 1034, 1442
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	123, 201, 976, 1058, 1244
BspACI	CCGC	2 cut(s)	465, 1180
BspANI	GGCC	5 cut(s)	188, 425, 712, 1034, 1442
BspCNI	CTCAG	3 cut(s)	430, 620, 876
BspLI	GGNNCC	1 cut(s)	713
BspMAI	CTGCAG	1 cut(s)	661
BspOI	GCTAGC	1 cut(s)	1143
BspPI	GGATC	1 cut(s)	971
BspQI	GCTCTTC	1 cut(s)	406
BsrDI	GCAATG	3 cut(s)	774, 1001, 1354
BsrI	ACTGG	4 cut(s)	941, 1183, 1221, 1377
BssMI	GATC	5 cut(s)	123, 201, 976, 1058, 1244
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	723, 970
Bst2BI	CACGAG	2 cut(s)	723, 970
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	4 cut(s)	71, 406, 1042, 1455
BstACI	GRCGYC	1 cut(s)	468
BstC8I	GCNNGC	6 cut(s)	313, 595, 648, 689, 950, 1141
BstDEI	CTNAG	5 cut(s)	417, 607, 757, 863, 1166
BstEII	GGTNACC	1 cut(s)	1283
BstF5I	GGATG	4 cut(s)	313, 750, 1010, 1390
BstKTI	GATC	5 cut(s)	126, 204, 979, 1061, 1247
BstMAI	GTCTC	2 cut(s)	1116, 1167
BstMBI	GATC	5 cut(s)	123, 201, 976, 1058, 1244
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 422, 656, 665, 945, 1368
BstNSI	RCATGY	3 cut(s)	315, 515, 825
BstPI	GGTNACC	1 cut(s)	1283
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	2 cut(s)	657, 844
BstV1I	GCAGC	2 cut(s)	424, 1402
BstX2I	RGATCY	1 cut(s)	1244
BstYI	RGATCY	1 cut(s)	1244
BsuRI	GGCC	5 cut(s)	188, 425, 712, 1034, 1442
BtsCI	GGATG	4 cut(s)	313, 750, 1010, 1390
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	666, 1214
Cac8I	GCNNGC	6 cut(s)	313, 595, 648, 689, 950, 1141
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	4 cut(s)	711, 1170, 1219, 1441
CseI	GACGC	2 cut(s)	457, 1341
Csp6I	GTAC	5 cut(s)	545, 556, 810, 1043, 1094
CviQI	GTAC	5 cut(s)	545, 556, 810, 1043, 1094
DdeI	CTNAG	5 cut(s)	417, 607, 757, 863, 1166
DpnI	GATC	5 cut(s)	125, 203, 978, 1060, 1246
DpnII	GATC	5 cut(s)	123, 201, 976, 1058, 1244
Eam1104I	CTCTTC	4 cut(s)	71, 406, 1042, 1455
EarI	CTCTTC	4 cut(s)	71, 406, 1042, 1455
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	1170, 1219
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	972, 1062
Eco91I	GGTNACC	1 cut(s)	1283
EcoICRI	GAGCTC	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	711, 1170
EcoO65I	GGTNACC	1 cut(s)	1283
EcoRI	GAATTC	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	418
FaqI	GGGAC	2 cut(s)	1171, 1222
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	438, 466, 1416
FokI	GGATG	4 cut(s)	320, 757, 997, 1377
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	438, 466, 1416
FspBI	CTAG	4 cut(s)	99, 1067, 1140, 1344
GluI	GCNGC	3 cut(s)	438, 466, 1416
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	188, 425, 712, 1034, 1442
HapII	CCGG	2 cut(s)	426, 561
HgaI	GACGC	2 cut(s)	457, 1341
Hin1I	GRCGYC	1 cut(s)	468
HindIII	AAGCTT	4 cut(s)	531, 595, 717, 1360
HinfI	GANTC	4 cut(s)	133, 908, 992, 1409
HpaII	CCGG	2 cut(s)	426, 561
HphI	GGTGA	3 cut(s)	551, 1290, 1347
Hpy188I	TCNGA	4 cut(s)	420, 731, 866, 991
Hpy188III	TCNNGA	7 cut(s)	91, 114, 205, 816, 836, 1311, 1454
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	178, 415, 1200
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	311, 440, 659, 948, 959, 1087, 1328, 1418
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 422, 656, 665, 945, 1368
HpyF3I	CTNAG	5 cut(s)	417, 607, 757, 863, 1166
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	5 cut(s)	123, 201, 976, 1058, 1244
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	256, 362, 577
Lsp1109I	GCAGC	2 cut(s)	424, 1402
LweI	GCATC	4 cut(s)	298, 700, 946, 1079
MaeI	CTAG	4 cut(s)	99, 1067, 1140, 1344
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	4 cut(s)	214, 1283, 1296, 1353
MalI	GATC	5 cut(s)	125, 203, 978, 1060, 1246
MboI	GATC	5 cut(s)	123, 201, 976, 1058, 1244
MboII	GAAGA	6 cut(s)	88, 423, 470, 1029, 1068, 1442
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	1244
MhlI	GDGCHC	1 cut(s)	418
MlyI	GAGTC	1 cut(s)	1418
MmeI	TCCRAC	1 cut(s)	832
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	1134, 1404
MspA1I	CMGCKG	3 cut(s)	497, 791, 1415
MspI	CCGG	2 cut(s)	426, 561
MspR9I	CCNGG	1 cut(s)	427
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	1463
MwoI	GCNNNNNNNGC	6 cut(s)	248, 422, 656, 665, 945, 1368
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	5 cut(s)	123, 201, 976, 1058, 1244
NheI	GCTAGC	1 cut(s)	1139
NlaIV	GGNNCC	1 cut(s)	713
NmuCI	GTSAC	3 cut(s)	214, 1296, 1353
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	315, 515, 825
PaeI	GCATGC	1 cut(s)	315
PciI	ACATGT	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	691, 700
PctI	GAATGC	1 cut(s)	1463
PfeI	GAWTC	3 cut(s)	133, 908, 992
PkrI	GCNGC	3 cut(s)	439, 467, 1417
PleI	GAGTC	1 cut(s)	1417
PpsI	GAGTC	1 cut(s)	1417
PpuMI	RGGWCCY	1 cut(s)	1170
PscI	ACATGT	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	1170
PspEI	GGTNACC	1 cut(s)	1283
PspN4I	GGNNCC	1 cut(s)	713
PspPI	GGNCC	4 cut(s)	711, 1170, 1219, 1441
PspPPI	RGGWCCY	1 cut(s)	1170
PsrI	GAACNNNNNNTAC	2 cut(s)	1298, 1330
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	1244
PvuII	CAGCTG	3 cut(s)	497, 791, 1415
RsaI	GTAC	5 cut(s)	546, 557, 811, 1044, 1095
RsaNI	GTAC	5 cut(s)	545, 556, 810, 1043, 1094
RseI	CAYNNNNRTG	2 cut(s)	1134, 1404
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	438, 466, 1416
Sau3AI	GATC	5 cut(s)	123, 201, 976, 1058, 1244
Sau96I	GGNCC	4 cut(s)	711, 1170, 1219, 1441
SchI	GAGTC	1 cut(s)	1418
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	4 cut(s)	298, 700, 946, 1079
SfcI	CTRYAG	2 cut(s)	657, 844
SinI	GGWCC	2 cut(s)	1170, 1219
SmiMI	CAYNNNNRTG	2 cut(s)	1134, 1404
SmlI	CTYRAG	2 cut(s)	836, 1309
SmoI	CTYRAG	2 cut(s)	836, 1309
SphI	GCATGC	1 cut(s)	315
SsiI	CCGC	2 cut(s)	465, 1180
SspMI	CTAG	4 cut(s)	99, 1067, 1140, 1344
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	4 cut(s)	113, 228, 317, 694
TatI	WGTACW	2 cut(s)	809, 1042
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	3 cut(s)	133, 908, 992
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	666, 1221
TseFI	GTSAC	3 cut(s)	214, 1296, 1353
TseI	GCWGC	2 cut(s)	437, 1415
Tsp45I	GTSAC	3 cut(s)	214, 1296, 1353
TspDTI	ATGAA	9 cut(s)	146, 471, 625, 728, 881, 912, 999, 1038, 1354
TspGWI	ACGGA	1 cut(s)	1214
TspRI	CASTG	2 cut(s)	666, 1221
VpaK11BI	GGWCC	2 cut(s)	1170, 1219
XapI	RAATTY	4 cut(s)	490, 734, 867, 887
XceI	RCATGY	3 cut(s)	315, 515, 825
XspI	CTAG	4 cut(s)	99, 1067, 1140, 1344
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.