AT1G72190

D-isomer specific 2-hydroxyacid dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
27167363 .. 27169754
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72190.1

Sequence Viewer

Length: 1122 bp
ATGACGATAATGTTTAAAATCGCAAAAGCTACGTTACGAAGCAGAAACTCAAGCGTCGCTTCGCTCTTCTACTCTATCCAAGCTCGCTCTATCTCCAGGCAAAGTAAAGTGGTTAAGATTGAGAGAATAGTTGAGAAAGAAGACATGCATGTAACTCGTGTTCTATTCTGCGGTCCTCACTTCCCTGATTCCTACAATTTCACCAGAGAATACTTGCAACCTTACCCTTTTATTAAGGTTGATGTTGTCCATTACCGCGATGTCCCTGAGGTTATTAAGAACTATCATATATGTGTGGCAATGACTATGCAAATGGATTCAAATGTTATATCTCGTGCAAGCAACATAAAGCTTATTATGCAGTACGGTGTTGGTCTCGACGGTGTTGACATTGATGCTGCTACTAAACATGGGATTAAGGTCGCTAGAATTCCTAGTGAGGGTACTGGAAATGCTGCATCTTGCTCTGAGATGGCTATATATCTAATGCTGGGACTTCTTAAGAAACAGAACGAAATGCAAATATCTCTGAGAAATAGACTACTTGGAGAACCAACCGGTGACACGCTTCTTGGTAAAACTGTATTTATCTTAGGATATGGAAACATCGGAATAGAGCTGGCTAAACGGTTGAAGCCATTTGGGTCGAGAGTAATAGCCACGAAAAGATTCTGGCCTGCTTCTATCGTCGACTCAGACTCCAGGCTAGTTGATGAGAAAGGTAGCCATGAAGACATTTACACATTCGCTGGCAAAGCCGATATAGTCGTTGTTTGTTTGAGGCTCAACAAAGAAACGGCTGAAATAGTGAATAAGGAGTTCATATGCTCAATGAAAAAGGGTGCTCTTCTTGTAAATATTGCCCGAGGTGGTCTTATTAACTATGAATCAGCTTTCCAGAATCTGGAGTCCGGTCATCTAGGAGGCCTTGGGATTGATGTGGCGTGGTCTGAGCCGTTTGATCCAAATGATCCTATTTTGAAGTTCAAAAACGTTATAATAACCCCTCATGTCGCTGGAGTTACCGAATATTCATATAGGTCCATGGCCAAGATTGTCGGAGACCTCGCGCTTCAGTTGCATGAAGGACTTCCTCTCACCGGAATCGAATTCGTCAATTAA

Protein Analysis

373

Amino Acids

41.45

Weight (kDa)

8.78

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 87 - 354 6.2e-15 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 161 - 339 2.7e-40 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 998
AccB7I CCANNNNNTGG 1 cut(s) 904
AccI GTMKAC 1 cut(s) 690
AccII CGCG 2 cut(s) 258, 1070
AciI CCGC 2 cut(s) 171, 256
AclI AACGTT 1 cut(s) 993
AclWI GGATC 2 cut(s) 956, 965
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 2 cut(s) 429, 1109
AcuI CTGAAG 1 cut(s) 1058
AfaI GTAC 2 cut(s) 365, 445
AfiI CCNNNNNNNGG 3 cut(s) 440, 904, 1100
AflII CTTAAG 1 cut(s) 500
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 321, 634, 982, 988
AjnI CCWGG 2 cut(s) 95, 701
AluBI AGCT 5 cut(s) 29, 83, 352, 619, 893
AluI AGCT 5 cut(s) 29, 83, 352, 619, 893
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 2 cut(s) 380, 1056
AlwI GGATC 2 cut(s) 956, 965
AlwNI CAGNNNCTG 1 cut(s) 904
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 3 cut(s) 674, 925, 1047
ApeKI GCWGC 2 cut(s) 398, 455
ApoI RAATTY 2 cut(s) 429, 1109
AsiGI ACCGGT 1 cut(s) 557
Asp700I GAANNNNTTC 2 cut(s) 668, 1089
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 2 cut(s) 173, 1041
AsuHPI GGTGA 3 cut(s) 193, 572, 1090
AvaI CYCGRG 1 cut(s) 864
AvaII GGWCC 2 cut(s) 173, 1041
AxyI CCTNAGG 1 cut(s) 267
BalI TGGCCA 1 cut(s) 1049
BauI CACGAG 2 cut(s) 156, 333
BbsI GAAGAC 2 cut(s) 147, 738
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 2 cut(s) 385, 442
BccI CCATC 1 cut(s) 466
BceAI ACGGC 2 cut(s) 813, 940
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 2 cut(s) 97, 703
BcoDI GTCTC 2 cut(s) 380, 1056
BfaI CTAG 4 cut(s) 426, 435, 707, 920
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 399, 456
BlsI GCNGC 2 cut(s) 400, 457
Bme1390I CCNGG 2 cut(s) 97, 703
Bme18I GGWCC 2 cut(s) 173, 1041
BmeT110I CYCGRG 1 cut(s) 864
BmgT120I GGNCC 2 cut(s) 173, 1041
BmrFI CCNGG 2 cut(s) 97, 703
BmsI GCATC 2 cut(s) 385, 467
BpiI GAAGAC 2 cut(s) 147, 738
BpmI CTGGAG 4 cut(s) 79, 685, 926, 1038
BpuEI CTTGAG 1 cut(s) 34
BsaI GGTCTC 2 cut(s) 380, 1056
BsaJI CCNNGG 3 cut(s) 865, 928, 1044
BsaWI WCCGGW 3 cut(s) 557, 911, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 904, 1100
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 451
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 97, 703
BseDI CCNNGG 3 cut(s) 865, 928, 1044
BseLI CCNNNNNNNGG 3 cut(s) 440, 904, 1100
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 5 cut(s) 258, 459, 521, 708, 942
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 385, 442
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 2 cut(s) 258, 1070
BshFI GGCC 3 cut(s) 676, 927, 1049
BshTI ACCGGT 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 864
BsiSI CCGG 3 cut(s) 558, 912, 1101
BslFI GGGAC 2 cut(s) 248, 507
BslI CCNNNNNNNGG 3 cut(s) 440, 904, 1100
BsmAI GTCTC 2 cut(s) 380, 1056
BsmFI GGGAC 2 cut(s) 248, 507
BsnI GGCC 3 cut(s) 676, 927, 1049
Bso31I GGTCTC 2 cut(s) 380, 1056
BsoBI CYCGRG 1 cut(s) 864
Bsp1286I GDGCHC 1 cut(s) 847
Bsp143I GATC 2 cut(s) 961, 970
Bsp19I CCATGG 1 cut(s) 1044
BspACI CCGC 2 cut(s) 171, 256
BspANI GGCC 3 cut(s) 676, 927, 1049
BspCNI CTCAG 5 cut(s) 259, 460, 522, 707, 943
BspFNI CGCG 2 cut(s) 258, 1070
BspPI GGATC 2 cut(s) 956, 965
BspQI GCTCTTC 2 cut(s) 71, 852
BspTI CTTAAG 1 cut(s) 500
BspTNI GGTCTC 2 cut(s) 380, 1056
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 3 cut(s) 865, 928, 1044
BssMI GATC 2 cut(s) 961, 970
BssSI CACGAG 2 cut(s) 156, 333
BssT1I CCWWGG 2 cut(s) 928, 1044
Bst2BI CACGAG 2 cut(s) 156, 333
Bst2UI CCWGG 2 cut(s) 97, 703
Bst4CI ACNGT 4 cut(s) 368, 383, 583, 630
Bst6I CTCTTC 2 cut(s) 71, 852
BstAFI CTTAAG 1 cut(s) 500
BstC8I GCNNGC 5 cut(s) 85, 340, 621, 678, 751
BstDEI CTNAG 6 cut(s) 267, 468, 530, 592, 694, 951
BstDSI CCRYGG 1 cut(s) 1044
BstFNI CGCG 2 cut(s) 258, 1070
BstHHI GCGC 1 cut(s) 1072
BstKTI GATC 2 cut(s) 964, 973
BstMAI GTCTC 2 cut(s) 380, 1056
BstMBI GATC 2 cut(s) 961, 970
BstMWI GCNNNNNNNGC 3 cut(s) 358, 755, 1078
BstNI CCWGG 2 cut(s) 97, 703
BstNSI RCATGY 2 cut(s) 148, 152
BstSCI CCNGG 2 cut(s) 95, 701
BstUI CGCG 2 cut(s) 258, 1070
BstV1I GCAGC 2 cut(s) 385, 442
BstV2I GAAGAC 2 cut(s) 147, 738
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 3 cut(s) 676, 927, 1049
BtgI CCRYGG 1 cut(s) 1044
BtgZI GCGATG 1 cut(s) 273
Cac8I GCNNGC 5 cut(s) 85, 340, 621, 678, 751
CaiI CAGNNNCTG 1 cut(s) 904
CfoI GCGC 1 cut(s) 1072
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 173, 1041
CseI GACGC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 364, 444
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 7 cut(s) 145, 149, 410, 728, 1010, 1045, 1082
CviQI GTAC 2 cut(s) 364, 444
DdeI CTNAG 6 cut(s) 267, 468, 530, 592, 694, 951
DpnI GATC 2 cut(s) 963, 972
DpnII GATC 2 cut(s) 961, 970
DraI TTTAAA 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 2 cut(s) 71, 852
EarI CTCTTC 2 cut(s) 71, 852
Eco130I CCWWGG 2 cut(s) 928, 1044
Eco147I AGGCCT 1 cut(s) 927
Eco31I GGTCTC 2 cut(s) 380, 1056
Eco47I GGWCC 2 cut(s) 173, 1041
Eco57I CTGAAG 1 cut(s) 1058
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 864
EcoRI GAATTC 2 cut(s) 429, 1109
EcoRII CCWGG 2 cut(s) 95, 701
EcoT14I CCWWGG 2 cut(s) 928, 1044
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 928, 1044
FaeI CATG 7 cut(s) 148, 152, 413, 731, 1013, 1048, 1085
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 2 cut(s) 248, 507
FatI CATG 7 cut(s) 144, 148, 409, 727, 1009, 1044, 1081
FauNDI CATATG 1 cut(s) 824
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 399, 456
Fsp4HI GCNGC 2 cut(s) 399, 456
FspBI CTAG 4 cut(s) 426, 435, 707, 920
GlaI GCGC 1 cut(s) 1071
GluI GCNGC 2 cut(s) 399, 456
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 4 cut(s) 79, 685, 926, 1038
HaeIII GGCC 3 cut(s) 676, 927, 1049
HapII CCGG 3 cut(s) 558, 912, 1101
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 1072
Hin1II CATG 7 cut(s) 148, 152, 413, 731, 1013, 1048, 1085
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HincII GTYRAC 2 cut(s) 388, 691
HindII GTYRAC 2 cut(s) 388, 691
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 9 cut(s) 188, 317, 669, 692, 698, 887, 901, 908, 1104
HpaII CCGG 3 cut(s) 558, 912, 1101
HphI GGTGA 3 cut(s) 193, 572, 1090
Hpy166II GTNNAC 2 cut(s) 388, 691
Hpy188I TCNGA 6 cut(s) 469, 531, 611, 697, 952, 1061
Hpy188III TCNNGA 4 cut(s) 377, 648, 898, 905
Hpy8I GTNNAC 2 cut(s) 388, 691
Hpy99I CGWCG 3 cut(s) 59, 383, 692
HpyAV CCTTC 1 cut(s) 1079
HpyCH4III ACNGT 4 cut(s) 368, 383, 583, 630
HpyCH4IV ACGT 2 cut(s) 32, 993
HpyCH4V TGCA 8 cut(s) 148, 217, 310, 338, 361, 458, 520, 1081
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 755, 1078
HpyF3I CTNAG 6 cut(s) 267, 468, 530, 592, 694, 951
HpySE526I ACGT 2 cut(s) 32, 993
Hsp92II CATG 7 cut(s) 148, 152, 413, 731, 1013, 1048, 1085
HspAI GCGC 1 cut(s) 1070
Kzo9I GATC 2 cut(s) 961, 970
LguI GCTCTTC 2 cut(s) 71, 852
Lsp1109I GCAGC 2 cut(s) 385, 442
LweI GCATC 2 cut(s) 385, 467
MaeI CTAG 4 cut(s) 426, 435, 707, 920
MaeII ACGT 2 cut(s) 32, 993
MaeIII GTNAC 4 cut(s) 33, 151, 560, 1021
MalI GATC 2 cut(s) 963, 972
MboI GATC 2 cut(s) 961, 970
MboII GAAGA 4 cut(s) 58, 152, 743, 839
MhlI GDGCHC 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 1049
MluCI AATT 4 cut(s) 196, 429, 1109, 1117
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 3 cut(s) 686, 692, 917
MmeI TCCRAC 1 cut(s) 1039
MnlI CCTC 9 cut(s) 186, 262, 433, 774, 860, 917, 1017, 1076, 1104
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 150
MroXI GAANNNNTTC 2 cut(s) 668, 1089
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 8 cut(s) 15, 114, 234, 276, 417, 501, 879, 1120
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 3 cut(s) 558, 912, 1101
MspR9I CCNGG 2 cut(s) 97, 703
MvaI CCWGG 2 cut(s) 97, 703
MvnI CGCG 2 cut(s) 258, 1070
MwoI GCNNNNNNNGC 3 cut(s) 358, 755, 1078
NcoI CCATGG 1 cut(s) 1044
NdeI CATATG 1 cut(s) 824
NdeII GATC 2 cut(s) 961, 970
NlaIII CATG 7 cut(s) 148, 152, 413, 731, 1013, 1048, 1085
NmuCI GTSAC 1 cut(s) 560
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 2 cut(s) 148, 152
PceI AGGCCT 1 cut(s) 927
PciSI GCTCTTC 2 cut(s) 71, 852
PdmI GAANNNNTTC 2 cut(s) 668, 1089
PfeI GAWTC 6 cut(s) 188, 317, 669, 887, 901, 1104
PflMI CCANNNNNTGG 1 cut(s) 904
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 2 cut(s) 400, 457
PleI GAGTC 3 cut(s) 686, 692, 916
PpsI GAGTC 3 cut(s) 686, 692, 916
PsiI TTATAA 1 cut(s) 998
Psp1406I AACGTT 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 95, 701
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 95, 701
PspPI GGNCC 2 cut(s) 173, 1041
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
PstNI CAGNNNCTG 1 cut(s) 904
RsaI GTAC 2 cut(s) 365, 445
RsaNI GTAC 2 cut(s) 364, 444
RseI CAYNNNNRTG 1 cut(s) 291
SalI GTCGAC 1 cut(s) 689
SapI GCTCTTC 2 cut(s) 71, 852
SaqAI TTAA 8 cut(s) 15, 114, 234, 276, 417, 501, 879, 1120
SatI GCNGC 2 cut(s) 399, 456
Sau3AI GATC 2 cut(s) 961, 970
Sau96I GGNCC 2 cut(s) 173, 1041
SchI GAGTC 3 cut(s) 686, 692, 917
ScrFI CCNGG 2 cut(s) 97, 703
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 2 cut(s) 385, 467
SinI GGWCC 2 cut(s) 173, 1041
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 49, 500
SmoI CTYRAG 2 cut(s) 49, 500
Sse9I AATT 4 cut(s) 196, 429, 1109, 1117
SseBI AGGCCT 1 cut(s) 927
SsiI CCGC 2 cut(s) 171, 256
SspI AATATT 2 cut(s) 859, 1031
SspMI CTAG 4 cut(s) 426, 435, 707, 920
StuI AGGCCT 1 cut(s) 927
StyD4I CCNGG 2 cut(s) 95, 701
StyI CCWWGG 2 cut(s) 928, 1044
TaaI ACNGT 4 cut(s) 368, 383, 583, 630
TaiI ACGT 2 cut(s) 35, 996
TaqI TCGA 4 cut(s) 378, 647, 690, 1107
TasI AATT 4 cut(s) 196, 429, 1109, 1117
TfiI GAWTC 6 cut(s) 188, 317, 669, 887, 901, 1104
Tru1I TTAA 8 cut(s) 15, 114, 234, 276, 417, 501, 879, 1120
Tru9I TTAA 8 cut(s) 15, 114, 234, 276, 417, 501, 879, 1120
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 2 cut(s) 398, 455
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 6 cut(s) 744, 811, 848, 900, 1023, 1098
Van91I CCANNNNNTGG 1 cut(s) 904
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 173, 1041
XapI RAATTY 2 cut(s) 429, 1109
XceI RCATGY 2 cut(s) 148, 152
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 2 cut(s) 668, 1089
XspI CTAG 4 cut(s) 426, 435, 707, 920
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.